TCONS_00016982 (transcript) - C. hemisphaerica

Overview
NameTCONS_00016982
Unique NameTCONS_00016982
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length470

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00016982 ID=TCONS_00016982|Name=TCONS_00016982|organism=Clytia hemisphaerica|type=transcript|length=470bp
atttgtgattttattttcatagcaaaattttatttacaataGATTGTATT
ATTTAACTGCATGGTAAAAAATACTGAAACAACAGCACGTCTAAATTTAT
TAAATACCAGTATTGTTGTGATGTCTTTCAATCTTAAGACTTCTAAAGAT
CTTAACTACACTCCTGTGTCACAGAACTGGCTGGACCCCCGCtgccaatt
caaaaaaaataagttaaaatctttTGTCACCGGGggaataccctacaatt
tcagtcCTGCTGGAAAtttgactttgttttcatcccTATTTATTATTCAA
Cgggaaaaaattgcactcagaaaccatccccactggatttttaccctaga
aacaatataatttctaacCCCATTTCGATAGGAATTTCCATTTTATAGGA
AGAAGTTCCAACGGGGCTGCGAGGCAGGGGGTTTAACTTTACCCATTTGC
GAATCAAAGACTAGTTTGNN
Run BLAST on NCBI

transcript from alignment at sc0000255:51318..51787

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00016982 ID=TCONS_00016982|Name=TCONS_00016982|organism=Clytia hemisphaerica|type=transcript|length=470bp|location=Sequence derived from alignment at sc0000255:51318..51787 (Clytia hemisphaerica)
NNCAAACTAGTCTTTGATTCGCAAATGGGTAAAGTTAAACCCCCTGCCTC
GCAGCCCCGTTGGAACTTCTTCCTATAAAATGGAAATTCCTATCGAAATG
GGgttagaaattatattgtttctagggtaaaaatccagtggggatggttt
ctgagtgcaattttttcccGTTGAATAATAAATAgggatgaaaacaaagt
caaaTTTCCAGCAGgactgaaattgtagggtattccCCCGGTGACAaaag
attttaacttattttttttgaattggcaGCGGGGGTCCAGCCAGTTCTGT
GACACAGGAGTGTAGTTAAGATCTTTAGAAGTCTTAAGATTGAAAGACAT
CACAACAATACTGGTATTTAATAAATTTAGACGTGCTGTTGTTTCAGTAT
TTTTTACCATGCAGTTAAATAATACAATCtattgtaaataaaattttgct
atgaaaataaaatcacaaat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009504XLOC_009504Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00016982-exon-sc0000255-1491911889:51318..51787TCONS_00016982-exon-sc0000255-1491911889:51318..51787Clytia hemisphaericaexon
TCONS_00016982-exon-sc0000255-1510915933:51318..51787TCONS_00016982-exon-sc0000255-1510915933:51318..51787Clytia hemisphaericaexon
TCONS_00016982-exon-sc0000255-1575043694:51318..51787TCONS_00016982-exon-sc0000255-1575043694:51318..51787Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000255supercontigsc0000255:51318..51787 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.13593	0	0.153907	0	0	0	1.04856	0.818039	0.114546	0.283767	0.550861	0.543172	2.07926	1.59603	0.231557	0	0.204084	0.31377	1.73396	2.11687	0.5257	1.15388	0.155855	0.708473	0.437826	0.651249	0	0.198917	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00016982 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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