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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00016922 ID=TCONS_00016922|Name=TCONS_00016922|organism=Clytia hemisphaerica|type=transcript|length=1544bp
TTAGAGTCTATAAtcatgatattcatgaagtaatgttttctacggaaata
ccccggttttagccagtaatggcaaattcaaactagacaaaagtcgtata
aaatttgccactgctggcaaaaaccggggtctttccgtagaaaacattac
gccatgaatatcatgaatcgtTGTATTTACTGTCAAATAATTTAGAGAAA
ATAatagaataaagaaaaaaaaattatcaatattATCACAGAATAGAATG
CCATCacaatggaatgtttacttaaTTGTGTTgctcagcctcgttttgac
gatgacgtcatcacacgCAAGACATATGTGTATCGTAGAGTTTATGGACA
CTGAGGATTGTATCAAATACATGAAGGCACACTCACCGTTCCGGCGAATC
AGAGCTCAAATCCCGCCTGGattttctttaaataaaaaacatgattGGTC
AAACTTCATGAACAGAATTGAAGTGGACGATTCCATGGAAACTAAATTAT
ACCAAAATGGCGCATCTTTATATAACCAAAATGAGCTCATTGACAGCAGC
GCTGGTTACTATGACAAAAGTAGTGGTTACTATGGAAACGGAGATATTGG
TTACAATGATGGTGTCGAGGTACATAGCAACGAGGCTAGAGATGCATATT
ACCGTAGAATGAGGCTAGAAAATGACGAAGTGAACTCTCATATTGAAAAT
GCGATGAATCAACAATACTATTCTTGACAGGGAAAATTCGTAAACTTGta
aaatagacgatatcggctttccgaattctccccgaatgattacccatgat
gcattgttagggttagggttattgtccgtgaatttctttgcgcaatgcat
catgggtaatcattcggggagaattcggttaagccgatatcgtctatcgT
AAACCATTTTTGTCTTTAGATTAGAGAAATCTTTTACCTAGAAATACACT
TTGCAAACTACTCTGTAATATGTAAAATTATGTACAGATACGTAAGTCTG
TCCATAGTCATCATAAAAAACCctgtctggcaatgtattgttttagctca
gtttttgttcaattttcttttgttaaaaacaaaagacaTGTTACGATTTG
CacactttttgatcacgttaccaaaatctctgGTCCCGGATCTATAGAAA
TGATcacattttcactttcatttacGGCTACACAGCAGCCGTTTTATAGT
TATAATATACAACTACTGCCTGGTTCATTTTTTGGACAACCCAACCATTT
CAGGGTGGTGAAGGGTGCATACCCGCCACTCTTCTGAATATTCCGCCCCA
AGGCGTTTATAGAATTCAATAGCGTTTTTATTCCAATCCAAGACATTCCA
ATGAACTCGAGAACACCCTTCACTTAAAGCTATCTCATTAACACGCTTTA
ACATTTGTGTCCCGTATCCTTTACCCCGGAATGCAGGTTCAATATACAGG
TCTTCGATTTTGATTGTACGTCCATTCCAGGTTGAGTAGGTTGGGAAGAA
TAAAGCATAACCGATCATTGTTGTGATTTCTTGCCCTGAATTGA Run BLAST on NCBI protein sequence of TCONS_00016922-protein >TCONS_00016922-protein ID=TCONS_00016922-protein|Name=TCONS_00016922-protein|organism=Clytia hemisphaerica|type=polypeptide|length=159bp
MPSQWNVYLIVLLSLVLTMTSSHARHMCIVEFMDTEDCIKYMKAHSPFRR
IRAQIPPGFSLNKKHDWSNFMNRIEVDDSMETKLYQNGASLYNQNELIDS
SAGYYDKSSGYYGNGDIGYNDGVEVHSNEARDAYYRRMRLENDEVNSHIE
NAMNQQYYS Run BLAST on NCBI transcript from alignment at sc0000254:318139..320021+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00016922 ID=TCONS_00016922|Name=TCONS_00016922|organism=Clytia hemisphaerica|type=transcript|length=1883bp|location=Sequence derived from alignment at sc0000254:318139..320021+ (Clytia hemisphaerica)
TTAGAGTCTATAAtcatgatattcatgaagtaatgttttctacggaaata
ccccggttttagccagtaatggcaaattcaaactagacaaaagtcgtata
aaatttgccactgctggcaaaaaccggggtctttccgtagaaaacattac
gccatgaatatcatgaatcgtTGTATTTACTGTCAAATAATTTAGAGAAA
ATAatagaataaagaaaaaaaaattatcaatattATCACAGAATAGAATG
CCATCacaatggaatgtttacttaaTTGTGTTgctcagcctcgttttgac
gatgacgtcatcacacgCAAGACATATGTGTATCGTAGAGTTTATGGACA
CTGAGGATTGTGTAAGTTGActtaacccagctggcacacaacgttgttta
aacgttaatataacgttatatggacgttgtgaacgttagaaaaacgttga
aacaacgttgtgtgccaccTGCTGGGAAAGCTCTTCGTAGGGGTTACCTT
GTGTGGTTTAAATTTaacgtggattaattttcgtgattttcgcgaatttt
ggccgtttttgcgaaatttagtccttgcaaaatattttagattCTCGATT
TGCTCAAAAAAGTCCACGCAAAAATTAACTCACTTAATTAGAAAGCTTAG
CATTGAGCTCTTTAGTCTATAATATTCCTACATTTAATTCCTGTTTTCAG
ATCAAATACATGAAGGCACACTCACCGTTCCGGCGAATCAGAGCTCAAAT
CCCGCCTGGattttctttaaataaaaaacatgattGGTCAAACTTCATGA
ACAGAATTGAAGTGGACGATTCCATGGAAACTAAATTATACCAAAATGGC
GCATCTTTATATAACCAAAATGAGCTCATTGACAGCAGCGCTGGTTACTA
TGACAAAAGTAGTGGTTACTATGGAAACGGAGATATTGGTTACAATGATG
GTGTCGAGGTACATAGCAACGAGGCTAGAGATGCATATTACCGTAGAATG
AGGCTAGAAAATGACGAAGTGAACTCTCATATTGAAAATGCGATGAATCA
ACAATACTATTCTTGACAGGGAAAATTCGTAAACTTGtaaaatagacgat
atcggctttccgaattctccccgaatgattacccatgatgcattgttagg
gttagggttattgtccgtgaatttctttgcgcaatgcatcatgggtaatc
attcggggagaattcggttaagccgatatcgtctatcgTAAACCATTTTT
GTCTTTAGATTAGAGAAATCTTTTACCTAGAAATACACTTTGCAAACTAC
TCTGTAATATGTAAAATTATGTACAGATACGTAAGTCTGTCCATAGTCAT
CATAAAAAACCctgtctggcaatgtattgttttagctcagtttttgttca
attttcttttgttaaaaacaaaagacaTGTTACGATTTGCacactttttg
atcacgttaccaaaatctctgGTCCCGGATCTATAGAAATGATcacattt
tcactttcatttacGGCTACACAGCAGCCGTTTTATAGTTATAATATACA
ACTACTGCCTGGTTCATTTTTTGGACAACCCAACCATTTCAGGGTGGTGA
AGGGTGCATACCCGCCACTCTTCTGAATATTCCGCCCCAAGGCGTTTATA
GAATTCAATAGCGTTTTTATTCCAATCCAAGACATTCCAATGAACTCGAG
AACACCCTTCACTTAAAGCTATCTCATTAACACGCTTTAACATTTGTGTC
CCGTATCCTTTACCCCGGAATGCAGGTTCAATATACAGGTCTTCGATTTT
GATTGTACGTCCATTCCAGGTTGAGTAGGTTGGGAAGAATAAAGCATAAC
CGATCATTGTTGTGATTTCTTGCCCTGAATTGA Coding sequence (CDS) from alignment at sc0000254:318139..320021+ >TCONS_00016922 ID=TCONS_00016922|Name=TCONS_00016922|organism=Clytia hemisphaerica|type=CDS|length=960bp|location=Sequence derived from alignment at sc0000254:318139..320021+ (Clytia hemisphaerica)
ATGCCATCacaatggaatgtttacttaaTTGTGTTgctcagcctcgtttt
gacgatgacgtcatcacacgCAAGACATATGTGTATCGTAGAGTTTATGG
ACACTGAGGATTGTATCAAATACATGAAGGCACACTCACCGTTCCGGCGA
ATCAGAGCTCAAATCCCGCCTGGattttctttaaataaaaaacatgattG
GTCAAACTTCATGAACAGAATTGAAGTGGACGATTCCATGGAAACTAAAT
TATACCAAAATGGCGCATCTTTATATAACCAAAATGAGCTCATTGACAGC
AGCGCTGGTTACTATGACAAAAGTAGTGGTTACTATGGAAACGGAGATAT
TGGTTACAATGATGGTGTCGAGGTACATAGCAACGAGGCTAGAGATGCAT
ATTACCGTAGAATGAGGCTAGAAAATGACGAAGTGAACTCTCATATTGAA
AATGCGATGAATCAACAATACTATTCTTGAATGCCATCacaatggaatgt
ttacttaaTTGTGTTgctcagcctcgttttgacgatgacgtcatcacacg
CAAGACATATGTGTATCGTAGAGTTTATGGACACTGAGGATTGTATCAAA
TACATGAAGGCACACTCACCGTTCCGGCGAATCAGAGCTCAAATCCCGCC
TGGattttctttaaataaaaaacatgattGGTCAAACTTCATGAACAGAA
TTGAAGTGGACGATTCCATGGAAACTAAATTATACCAAAATGGCGCATCT
TTATATAACCAAAATGAGCTCATTGACAGCAGCGCTGGTTACTATGACAA
AAGTAGTGGTTACTATGGAAACGGAGATATTGGTTACAATGATGGTGTCG
AGGTACATAGCAACGAGGCTAGAGATGCATATTACCGTAGAATGAGGCTA
GAAAATGACGAAGTGAACTCTCATATTGAAAATGCGATGAATCAACAATA
CTATTCTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00016922-exon-sc0000254-1491911889:318139..318499 | TCONS_00016922-exon-sc0000254-1491911889:318139..318499 | Clytia hemisphaerica | exon |
| TCONS_00016922-exon-sc0000254-1510915933:318139..318499 | TCONS_00016922-exon-sc0000254-1510915933:318139..318499 | Clytia hemisphaerica | exon |
| TCONS_00016922-exon-sc0000254-1575043694:318139..318499 | TCONS_00016922-exon-sc0000254-1575043694:318139..318499 | Clytia hemisphaerica | exon |
| TCONS_00016922-exon-sc0000254-1491911889:318839..320021 | TCONS_00016922-exon-sc0000254-1491911889:318839..320021 | Clytia hemisphaerica | exon |
| TCONS_00016922-exon-sc0000254-1510915933:318839..320021 | TCONS_00016922-exon-sc0000254-1510915933:318839..320021 | Clytia hemisphaerica | exon |
| TCONS_00016922-exon-sc0000254-1575043694:318839..320021 | TCONS_00016922-exon-sc0000254-1575043694:318839..320021 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000254 | supercontig | sc0000254:318139..320021 + |
Blast
BLAST of TCONS_00016922 vs. Swiss-Prot (Human)
Match: SAT2 (Diamine acetyltransferase 2 OS=Homo sapiens GN=SAT2 PE=1 SV=1) HSP 1 Score: 93.5893 bits (231), Expect = 7.355e-22 Identity = 37/77 (48.05%), Postives = 59/77 (76.62%), Query Frame = -3
Query: 1291 TMIGYALFFPTYSTWNGRTIKIEDLYIEPAFRGKGYGTQMLKRVNEIALSEGCSRVHWNVLDWNKNAIEFYKRLGAE 1521
++GY +++ YSTW GRTI +ED+Y+ P +RG+G G++++K+V E+AL +GCS+ VLDWN+ A++ YK LGA+
Sbjct: 70 CVVGYGIYYFIYSTWKGRTIYLEDIYVMPEYRGQGIGSKIIKKVAEVALDKGCSQFRLAVLDWNQRAMDLYKALGAQ 146
The following BLAST results are available for this feature:
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