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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00016913 ID=TCONS_00016913|Name=TCONS_00016913|organism=Clytia hemisphaerica|type=transcript|length=570bp
AGTTTGGAACACAATTGAACACAGGATATGTTGAATATTTTGACCCTAAA
CGAGATCCCTCATTTCAGAAGACATTTCTTTTTATGAAGAGATATAATTA
TGCTGATACGTCACAAGCTATTAGAGATCTTAAATCAGGGAAACTGAATG
CAGTGATCAACGATTATTACATTCTACGTTATTACATGGTCCGACAACCC
GACTGTAGTATCCGAATGGTCGGTAAAGTCGTCCCCGACGCCGGATACAG
CCTAGCAATGCGGAAAGGCTCGACGTATAGAAACATCTTATCAGAGCTCG
TCCGAAAGTATAAATACGACGGAACTATTGAACGACTCCAGATGAAATGG
TTTAGTAACAATTGCCATGATCAGAATCGTGGGCACCAAGCGGCCGAAAG
AGCCGGTATCACGTCCTTTGGGGGCCTACTTATAATCGCAagctttgttt
gttttttattgataccgtgtttgttttgttttgaagttgttcgaaaaaga
ttttcaagcGAGGATAAGGAGGTCAGTAAAATGGGCCTTGGTGAAAAAGC
GATGTTGATTTTGCCTGGTA Run BLAST on NCBI protein sequence of TCONS_00016913-protein >TCONS_00016913-protein ID=TCONS_00016913-protein|Name=TCONS_00016913-protein|organism=Clytia hemisphaerica|type=polypeptide|length=189bp
FGTQLNTGYVEYFDPKRDPSFQKTFLFMKRYNYADTSQAIRDLKSGKLNA
VINDYYILRYYMVRQPDCSIRMVGKVVPDAGYSLAMRKGSTYRNILSELV
RKYKYDGTIERLQMKWFSNNCHDQNRGHQAAERAGITSFGGLLIIASFVC
FLLIPCLFCFEVVRKRFSSEDKEVSKMGLGEKAMLILPG Run BLAST on NCBI transcript from alignment at sc0000254:38243..39313+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00016913 ID=TCONS_00016913|Name=TCONS_00016913|organism=Clytia hemisphaerica|type=transcript|length=1071bp|location=Sequence derived from alignment at sc0000254:38243..39313+ (Clytia hemisphaerica)
AGTTTGGAACACAATTGAACACAGGATATGTTGAATATTTTGACCCTAAA
CGAGATCCCTCATTTCAGAAGACATTTCTTTTTATGAAGAGATATAATTA
TGCTGATACGTCACAAGCTATTAGAGATCTTAAATCAGGGTAAGTTTCTT
GCCAACTAGgagtaaaccgccctgacgccctgactATCCGCTTGTATAAT
TTCCCGCGGTTACTGACCCTCTAAAAcagacgatagcatcgtctacttGT
CAACCGACTTGATATATCAtcattattgttttgattttctgatttatttt
tgcagACTAAGCAGGGGGCGGGAACATAAGGGCGGCGGGCGTATGCATGC
ATATAAGCTCAGTAGGAGAACTAGGACATGTTGGTACGAGGTGCTTCCCT
TTCCATGAAATGTGAAATTCCTAAATTTTCTGAACATGACCATGATGGTA
CCTTAAAAGGTTTCTGTAGGGTATctttgggacgagatggagctTTTaga
agctcttatttgatttggttgtaataaaacaatttcgttactttttctat
aaaaaaaaactcTATCTCATTTGGTATCTTTGACAGAATCAatatttaaa
taattttttaaaagttttcttcatCTCTTTTTTTTCGTAGGAAACTGAAT
GCAGTGATCAACGATTATTACATTCTACGTTATTACATGGTCCGACAACC
CGACTGTAGTATCCGAATGGTCGGTAAAGTCGTCCCCGACGCCGGATACA
GCCTAGCAATGCGGAAAGGCTCGACGTATAGAAACATCTTATCAGAGCTC
GTCCGAAAGTATAAATACGACGGAACTATTGAACGACTCCAGATGAAATG
GTTTAGTAACAATTGCCATGATCAGAATCGTGGGCACCAAGCGGCCGAAA
GAGCCGGTATCACGTCCTTTGGGGGCCTACTTATAATCGCAagctttgtt
tgttttttattgataccgtgtttgttttgttttgaagttgttcgaaaaag
attttcaagcGAGGATAAGGAGGTCAGTAAAATGGGCCTTGGTGAAAAAG
CGATGTTGATTTTGCCTGGTA Coding sequence (CDS) from alignment at sc0000254:38243..39313+ >TCONS_00016913 ID=TCONS_00016913|Name=TCONS_00016913|organism=Clytia hemisphaerica|type=CDS|length=1134bp|location=Sequence derived from alignment at sc0000254:38243..39313+ (Clytia hemisphaerica)
TTTGGAACACAATTGAACACAGGATATGTTGAATATTTTGACCCTAAACG
AGATCCCTCATTTCAGAAGACATTTCTTTTTATGAAGAGATATAATTATG
CTGATACGTCACAAGCTATTAGAGATCTTAAATCAGGGAAACTGAATGCA
GTGATCAACGATTATTACATTCTACGTTATTACATGGTCCGACAACCCGA
CTGTAGTATCCGAATGGTCGGTAAAGTCGTCCCCGACGCCGGATACAGCC
TAGCAATGCGGAAAGGCTCGACGTATAGAAACATCTTATCAGAGCTCGTC
CGAAAGTATAAATACGACGGAACTATTGAACGACTCCAGATGAAATGGTT
TAGTAACAATTGCCATGATCAGAATCGTGGGCACCAAGCGGCCGAAAGAG
CCGGTATCACGTCCTTTGGGGGCCTACTTATAATCGCAagctttgtttgt
tttttattgataccgtgtttgttttgttttgaagttgttcgaaaaagatt
ttcaagcGAGGATAAGGAGGTCAGTAAAATGGGCCTTGGTGAAAAAGCGA
TGTTGATTTTGCCTGGTTTTGGAACACAATTGAACACAGGATATGTTGAA
TATTTTGACCCTAAACGAGATCCCTCATTTCAGAAGACATTTCTTTTTAT
GAAGAGATATAATTATGCTGATACGTCACAAGCTATTAGAGATCTTAAAT
CAGGGAAACTGAATGCAGTGATCAACGATTATTACATTCTACGTTATTAC
ATGGTCCGACAACCCGACTGTAGTATCCGAATGGTCGGTAAAGTCGTCCC
CGACGCCGGATACAGCCTAGCAATGCGGAAAGGCTCGACGTATAGAAACA
TCTTATCAGAGCTCGTCCGAAAGTATAAATACGACGGAACTATTGAACGA
CTCCAGATGAAATGGTTTAGTAACAATTGCCATGATCAGAATCGTGGGCA
CCAAGCGGCCGAAAGAGCCGGTATCACGTCCTTTGGGGGCCTACTTATAA
TCGCAagctttgtttgttttttattgataccgtgtttgttttgttttgaa
gttgttcgaaaaagattttcaagcGAGGATAAGGAGGTCAGTAAAATGGG
CCTTGGTGAAAAAGCGATGTTGATTTTGCCTGGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00016913-exon-sc0000254-1491911889:38243..38381 | TCONS_00016913-exon-sc0000254-1491911889:38243..38381 | Clytia hemisphaerica | exon |
| TCONS_00016913-exon-sc0000254-1510915933:38243..38381 | TCONS_00016913-exon-sc0000254-1510915933:38243..38381 | Clytia hemisphaerica | exon |
| TCONS_00016913-exon-sc0000254-1575043694:38243..38381 | TCONS_00016913-exon-sc0000254-1575043694:38243..38381 | Clytia hemisphaerica | exon |
| TCONS_00016913-exon-sc0000254-1491911889:38883..39313 | TCONS_00016913-exon-sc0000254-1491911889:38883..39313 | Clytia hemisphaerica | exon |
| TCONS_00016913-exon-sc0000254-1510915933:38883..39313 | TCONS_00016913-exon-sc0000254-1510915933:38883..39313 | Clytia hemisphaerica | exon |
| TCONS_00016913-exon-sc0000254-1575043694:38883..39313 | TCONS_00016913-exon-sc0000254-1575043694:38883..39313 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000254 | supercontig | sc0000254:38243..39313 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR001638 | Solute-binding_3/MltF_N |
Blast
The following BLAST results are available for this feature:
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