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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00016909 ID=TCONS_00016909|Name=TCONS_00016909|organism=Clytia hemisphaerica|type=transcript|length=4211bpRun BLAST on NCBI protein sequence of TCONS_00016909-protein >TCONS_00016909-protein ID=TCONS_00016909-protein|Name=TCONS_00016909-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1053bp MASALNRKDKQILMDFDASVRDFGKQLGDQQRVLDSRTENKTLLVNDLQERun BLAST on NCBI transcript from alignment at sc0000254:3068..23431+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00016909 ID=TCONS_00016909|Name=TCONS_00016909|organism=Clytia hemisphaerica|type=transcript|length=20364bp|location=Sequence derived from alignment at sc0000254:3068..23431+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000254:3068..23431+ >TCONS_00016909 ID=TCONS_00016909|Name=TCONS_00016909|organism=Clytia hemisphaerica|type=CDS|length=50592bp|location=Sequence derived from alignment at sc0000254:3068..23431+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00016909 vs. Swiss-Prot (Human)
Match: SRGP3 (SLIT-ROBO Rho GTPase-activating protein 3 OS=Homo sapiens GN=SRGAP3 PE=1 SV=3) HSP 1 Score: 419.853 bits (1078), Expect = 3.404e-125 Identity = 256/809 (31.64%), Postives = 447/809 (55.25%), Query Frame = 1
Query: 562 RKDKQILMDFDASVRDFGKQLGDQQRVLDSRTENKTLLVNDLQEFFKRRAEIDLEYGKSMDRLCDRFTERFQKQRSNYGLAKKDR--ASFVNLWHKLLIDTKFKAKTATTLSEIFNKNICQRLVDISDDVQRIARKVKETQVTLQGEVNQLVSQLQADMKHYYTKHAEYIISEGKYRASESDHQK-----------VLDSPXXXXXXXXXXXXXXXXXXRRARFVECKLKAARARNAFILGAESVSSIIHKYYNNDLTDMIGKYDHNFHSSFSSTLQSFIGAEIRMSNANIQSANSLAHTISIMDCHSDIKMFLEDNHSTFLPQVKFTFLPHAEDETHTITADRDIESELRHEYHKIQESLKQLQMELHDLQVSMEKRKKGLETTYKKYDSDM-NGFYHMDMLPVSGAQTKSP-TDSQLQTTPPSQLKQEKEEWETSLLSKFRESIMSEMMRTGEQSKYDLLTKALGEI------TSDPSRLSIIPDRKKRI--------KLFGTGLKQQIDETGREIPDIVESCAKYIAKYGLKHQGIFRVPGASQEISDMKTSFEEGRDPLSGLNHWKDINAVAGVFRVYFREMSEPLFPYEFNNDYLRASCITRTDEQVAEARSILQKIQQWNLHVIKYMLKFLNLIAQYSEHNKMTSHNLAVVFGPTLFRVPDNENLLTSQGQINAFIGILISEFYSIFPDEPHEIGFXXXXXXXXXXXXXXXXAQTE----DEL---------SEDEADDYIDVVALYNYTARTTKEVSFNKGDIIRVFSRTNVDWWDARVNGKFGFVPVPYVKVLERPASVSD 2862
+KDK+I+ +++A +++ QL +Q + L+ ++E++ L+ DLQEFF+R+AEI+LEY +S+++L +RF+ + + R + KKD+ S VN W+ +L T+ +++ TL++IF N+ RL IS+DV R+ +K KE + + E+ ++ ++L MK Y+ HAE I +E K + +E +K +L + +K +EK EKR+A++ E KLK +ARN ++L + ++ I KYY +D++D+I D FH+S + T ++++ AE + + + + + + + +D SD ++ + F P +KF F PH DE ++A + +++EL YH++Q L L++E +++ +++ + L+ D D+ + F H S KS +++ + ++ + ++E E +KF+E + + T Q+K+DLL + LGE T+ P L P + +R KLF ++ I ++G+ IP +VESC +YI YGL+ QGIFRVPG+ E++D+K SFE G DPL + +DIN+VAGV ++YFR + PLFP E D + + E+V + + IL + + + V++Y+ FLN ++QYS+ N M +NLA+ FGPTL +PD ++ ++ Q IN I +I +IFP P E+ + D +E DE+ + DE + I+ +A ++Y R+ +E+SF KG + ++ R + DWW+ R NG G +P Y+ V + + SD
Sbjct: 8 KKDKEIIAEYEAQIKEIRTQLVEQFKCLEQQSESRLQLLQDLQEFFRRKAEIELEYSRSLEKLAERFSSKIRSSREHQ--FKKDQYLLSPVNCWYLVLHQTRRESRDHATLNDIFMNNVIVRLSQISEDVIRLFKKSKEIGLQMHEELLKVTNELYTVMKTYHMYHAESISAESKLKEAEKQEEKQFNKSGDLSMNLLRHEDRPQRRSSVKKIEKMKEKRQAKYSENKLKCTKARNDYLLNLAATNAAISKYYIHDVSDLIDCCDLGFHASLARTFRTYLSAEYNLETSRHEGLDVIENAVDNLDSRSDKHTVMDMCNQVFCPPLKFEFQPHMGDEVCQVSAQQPVQTELLMRYHQLQSRLATLKIENEEVRKTLDATMQTLQDMLTVEDFDVSDAFQHSR----STESVKSAASETYMSKINIAKRRANQQETEMFYFTKFKEYVNGSNLITKLQAKHDLLKQTLGEGERAECGTTRPPCLPPKPQKMRRPRPLSVYSHKLFNGSMEAFIKDSGQAIPLVVESCIRYINLYGLQQQGIFRVPGSQVEVNDIKNSFERGEDPLVDDQNERDINSVAGVLKLYFRGLENPLFPKERFQDLISTIKLENPAERVHQIQQILVTLPRVVIVVMRYLFAFLNHLSQYSDENMMDPYNLAICFGPTLMHIPDGQDPVSCQAHINEVIKTIIIHHEAIFPS-PRELEGPVYEKCMAGGEEYCDSPHSEPGAIDEVDHDNGTEPHTSDEEVEQIEAIAKFDYMGRSPRELSFKKGASLLLYHRASEDWWEGRHNGVDGLIPHQYIVVQDMDDAFSD 809 The following BLAST results are available for this feature:
BLAST of TCONS_00016909 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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