TCONS_00016909-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00016909-protein
Unique Name	TCONS_00016909-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1053

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00016909-protein ID=TCONS_00016909-protein|Name=TCONS_00016909-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1053bp
MASALNRKDKQILMDFDASVRDFGKQLGDQQRVLDSRTENKTLLVNDLQE
FFKRRAEIDLEYGKSMDRLCDRFTERFQKQRSNYGLAKKDRASFVNLWHK
LLIDTKFKAKTATTLSEIFNKNICQRLVDISDDVQRIARKVKETQVTLQG
EVNQLVSQLQADMKHYYTKHAEYIISEGKYRASESDHQKVLDSPMKKGNE
KKMKNMEKTVEKRRARFVECKLKAARARNAFILGAESVSSIIHKYYNNDL
TDMIGKYDHNFHSSFSSTLQSFIGAEIRMSNANIQSANSLAHTISIMDCH
SDIKMFLEDNHSTFLPQVKFTFLPHAEDETHTITADRDIESELRHEYHKI
QESLKQLQMELHDLQVSMEKRKKGLETTYKKYDSDMNGFYHMDMLPVSGA
QTKSPTDSQLQTTPPSQLKQEKEEWETSLLSKFRESIMSEMMRTGEQSKY
DLLTKALGEITSDPSRLSIIPDRKKRIKLFGTGLKQQIDETGREIPDIVE
SCAKYIAKYGLKHQGIFRVPGASQEISDMKTSFEEGRDPLSGLNHWKDIN
AVAGVFRVYFREMSEPLFPYEFNNDYLRASCITRTDEQVAEARSILQKIQ
QWNLHVIKYMLKFLNLIAQYSEHNKMTSHNLAVVFGPTLFRVPDNENLLT
SQGQINAFIGILISEFYSIFPDEPHEIGFEDKTDGGTKDDGDEDGAQTED
ELSEDEADDYIDVVALYNYTARTTKEVSFNKGDIIRVFSRTNVDWWDARV
NGKFGFVPVPYVKVLERPASVSDVSASGNMTGRRKSHEHLTSPKSPNESE
SSPSSPNNADPKSFAAFNPATQQLKSASTSSVGSTGEHVGNVFAALDPTV
RPVTASPSSIRRSGSDRSGVSGGRVGSLPNRSQSERFGANGRSRIAETDA
ENSGNDPQLQHTLNKVSTAFSQTKQPILPPSLPPSAAKQYMAGQNAENKI
KEETETESEPSSSTFMPRSSVKDRTKMFHNTPIMCERPPSGLGLHKPPTP
GQHGEAVPSFKPPPPPTALKPKPGRKNQELAQAVMSAATKKAQQQDKDNV
THL

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_009470	XLOC_009470	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00016909	TCONS_00016909	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR013315	Spectrin_alpha_SH3
IPR001452	SH3_domain
IPR001060	FCH_dom
IPR000198	RhoGAP_dom
IPR027267	AH/BAR-dom
IPR008936	Rho_GTPase_activation_prot

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

Vocabulary: **Biological Process**
Term	Definition
GO:0007165	signal transduction

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007165	signal transduction
molecular_function	GO:0005515	protein binding

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 340..367
None	No IPR available	GENE3D	1.20.58.60		coord: 7..383 e-value: 0.18 score: 11.4
None	No IPR available	GENE3D	1.10.555.10		coord: 470..673 e-value: 6.5E-54 score: 182.0
None	No IPR available	GENE3D	2.30.30.40		coord: 693..781 e-value: 1.8E-18 score: 65.6
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 772..814
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 678..704
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 850..1053
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 398..424
IPR013315	Spectrin alpha chain, SH3 domain	PRINTS	PR01887	SPECTRNALPHA	coord: 745..766 score: 49.82 coord: 730..744 score: 40.8 coord: 710..729 score: 39.2
IPR001452	SH3 domain	PRINTS	PR00452	SH3DOMAIN	coord: 711..721 score: 42.55 coord: 725..740 score: 31.86 coord: 753..765 score: 33.79 coord: 742..751 score: 30.7
IPR001452	SH3 domain	SMART	SM00326	SH3_2	coord: 711..766 e-value: 6.1E-18 score: 75.6
IPR001452	SH3 domain	PFAM	PF00018	SH3_1	coord: 714..759 e-value: 5.0E-15 score: 54.7
IPR001452	SH3 domain	PROSITE	PS50002	SH3	coord: 708..767 score: 16.659
IPR001452	SH3 domain	SUPERFAMILY	50044	SH3-domain	coord: 713..787
IPR001060	FCH domain	SMART	SM00055	fch_2	coord: 21..119 e-value: 0.0023 score: 27.2
IPR001060	FCH domain	PFAM	PF00611	FCH	coord: 32..105 e-value: 1.7E-12 score: 47.4
IPR000198	Rho GTPase-activating protein domain	SMART	SM00324	RhoGAP_3	coord: 493..667 e-value: 2.2E-46 score: 170.1
IPR000198	Rho GTPase-activating protein domain	PFAM	PF00620	RhoGAP	coord: 496..645 e-value: 3.7E-40 score: 137.1
IPR000198	Rho GTPase-activating protein domain	PROSITE	PS50238	RHOGAP	coord: 482..670 score: 40.215
IPR027267	Arfaptin homology (AH) domain/BAR domain	SUPERFAMILY	103657	BAR/IMD domain-like	coord: 22..325
IPR008936	Rho GTPase activation protein	SUPERFAMILY	48350	GTPase activation domain, GAP	coord: 478..670

Blast

[Close]

BLAST of TCONS_00016909-protein vs. Swiss-Prot (Human)
Match: SRGP3 (SLIT-ROBO Rho GTPase-activating protein 3 OS=Homo sapiens GN=SRGAP3 PE=1 SV=3)

HSP 1 Score: 447.203 bits (1149), Expect = 2.497e-139
Identity = 259/812 (31.90%), Postives = 452/812 (55.67%), Query Frame = 0

Query:    7 RKDKQILMDFDASVRDFGKQLGDQQRVLDSRTENKTLLVNDLQEFFKRRAEIDLEYGKSMDRLCDRFTERFQKQRSNYGLAKKDRASFVNLWHKLLIDTKFKAKTATTLSEIFNKNICQRLVDISDDVQRIARKVKETQVTLQGEVNQLVSQLQADMKHYYTKHAEYIISEGKYRASESDHQKVL--------------DSPMKKGNEKKMKNMEKTVEKRRARFVECKLKAARARNAFILGAESVSSIIHKYYNNDLTDMIGKYDHNFHSSFSSTLQSFIGAEIRMSNANIQSANSLAHTISIMDCHSDIKMFLEDNHSTFLPQVKFTFLPHAEDETHTITADRDIESELRHEYHKIQESLKQLQMELHDLQVSMEKRKKGLETTYKKYDSDM-NGFYHMDMLPVSGAQTKSP-TDSQLQTTPPSQLKQEKEEWETSLLSKFRESIMSEMMRTGEQSKYDLLTKALGEI------TSDPSRLSIIPDRKKRI--------KLFGTGLKQQIDETGREIPDIVESCAKYIAKYGLKHQGIFRVPGASQEISDMKTSFEEGRDPLSGLNHWKDINAVAGVFRVYFREMSEPLFPYEFNNDYLRASCITRTDEQVAEARSILQKIQQWNLHVIKYMLKFLNLIAQYSEHNKMTSHNLAVVFGPTLFRVPDNENLLTSQGQINAFIGILISEFYSIFPDEPHEI----------GFEDKTDG-----GTKDDGDEDGAQTEDELSEDEADDYIDVVALYNYTARTTKEVSFNKGDIIRVFSRTNVDWWDARVNGKFGFVPVPYVKVLERPASVSD 773
            +KDK+I+ +++A +++   QL +Q + L+ ++E++  L+ DLQEFF+R+AEI+LEY +S+++L +RF+ + +  R +     +   S VN W+ +L  T+ +++   TL++IF  N+  RL  IS+DV R+ +K KE  + +  E+ ++ ++L   MK Y+  HAE I +E K + +E   +K                D P ++ + KK++ M+   EKR+A++ E KLK  +ARN ++L   + ++ I KYY +D++D+I   D  FH+S + T ++++ AE  +  +  +  + + + +  +D  SD    ++  +  F P +KF F PH  DE   ++A + +++EL   YH++Q  L  L++E  +++ +++   + L+      D D+ + F H      S    KS  +++ +     ++ +  ++E E    +KF+E +    + T  Q+K+DLL + LGE       T+ P  L   P + +R         KLF   ++  I ++G+ IP +VESC +YI  YGL+ QGIFRVPG+  E++D+K SFE G DPL    + +DIN+VAGV ++YFR +  PLFP E   D +    +    E+V + + IL  + +  + V++Y+  FLN ++QYS+ N M  +NLA+ FGPTL  +PD ++ ++ Q  IN  I  +I    +IFP  P E+          G E+  D      G  D+ D D   TE   S++E +  I+ +A ++Y  R+ +E+SF KG  + ++ R + DWW+ R NG  G +P  Y+ V +   + SD
Sbjct:    8 KKDKEIIAEYEAQIKEIRTQLVEQFKCLEQQSESRLQLLQDLQEFFRRKAEIELEYSRSLEKLAERFSSKIRSSREHQFKKDQYLLSPVNCWYLVLHQTRRESRDHATLNDIFMNNVIVRLSQISEDVIRLFKKSKEIGLQMHEELLKVTNELYTVMKTYHMYHAESISAESKLKEAEKQEEKQFNKSGDLSMNLLRHEDRPQRRSSVKKIEKMK---EKRQAKYSENKLKCTKARNDYLLNLAATNAAISKYYIHDVSDLIDCCDLGFHASLARTFRTYLSAEYNLETSRHEGLDVIENAVDNLDSRSDKHTVMDMCNQVFCPPLKFEFQPHMGDEVCQVSAQQPVQTELLMRYHQLQSRLATLKIENEEVRKTLDATMQTLQDMLTVEDFDVSDAFQHSR----STESVKSAASETYMSKINIAKRRANQQETEMFYFTKFKEYVNGSNLITKLQAKHDLLKQTLGEGERAECGTTRPPCLPPKPQKMRRPRPLSVYSHKLFNGSMEAFIKDSGQAIPLVVESCIRYINLYGLQQQGIFRVPGSQVEVNDIKNSFERGEDPLVDDQNERDINSVAGVLKLYFRGLENPLFPKERFQDLISTIKLENPAERVHQIQQILVTLPRVVIVVMRYLFAFLNHLSQYSDENMMDPYNLAICFGPTLMHIPDGQDPVSCQAHINEVIKTIIIHHEAIFPS-PRELEGPVYEKCMAGGEEYCDSPHSEPGAIDEVDHDNG-TEPHTSDEEVEQ-IEAIAKFDYMGRSPRELSFKKGASLLLYHRASEDWWEGRHNGVDGLIPHQYIVVQDMDDAFSD 809

The following BLAST results are available for this feature:

BLAST of TCONS_00016909-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00016909-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
SRGP3	2.497e-139	31.90	SLIT-ROBO Rho GTPase-activating protein 3 OS=Homo ...	[more]

You are here

TCONS_00016909-protein (polypeptide) - C. hemisphaerica