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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00016871 ID=TCONS_00016871|Name=TCONS_00016871|organism=Clytia hemisphaerica|type=transcript|length=928bp
TCGTTAAAATGttataaatcaaaataaaaacaattatttactTTGTCCCA
TGACACGCGACCTAAATACAAAACAAAAGCGCAGCTTCTCTTTCTCTTAC
CAAGAGTaactattttagttaaaaagtATGCATAAAAATGAATGTCCTTT
TTCATATTGATAATTTagcaataaaatacctttgatGTCTCTAACAGCTC
CATGAAATATCCTTAAAATATTGTTATCTTACACAAGGAACAGTTATTGC
TGATTATTATCCATTTGTTTTACCAGTTCAAATTCATAGCTGTTTTCTTT
TACCAGTTGGGGTTTCCTGGAGGTCTCATACCGGGTGGAGGTCCTCCCAT
CATTCCTGGTGGTGGTGGTCCTCCCATCATTCCTGGTGGTGGTGGCCCTC
CTCGGCCATACTGTTGTGGTGGTGGAGCCATTGCTTGTTGTGATGGGCCA
CCGACTCCACGAACGGGACCAGCCAGACCAGCAGGTGCAGCTCCCATACT
TGGTGTGGGCATTCCTCGGCCAGCTGCACGTCCCATACCAGCGCCAGGGG
TGGCTTTAGCAGCTGGTGTTTTGTTTCGGTCCTCTTTTGATGGAGGAGCT
TCAACAGTCATTGAAACTAAATGTTCTCCTCTTAGTAAAACAAGACCAAG
GGCACGTTTTTCCTCACGTCCCTTTTCGGAGCCGCCCTTGGATTTGATCT
TCCTGAACTCATCACAGTCACCAAGAATAAGATTCATGTGTTTGTCAAAA
GCCAAGAATGTACCAATAAATAATCGACCATCTTGTAAATGACATCTCAT
TCTGTAGTTGATGTGTACCAACATTTTGGCACTCTTTCCTAATTGAGGCA
tcttgatattatttttctattaGTTCCCTGAAAAgataaataaacataaa
aatcgGTACAGTATTTCAACATGACATA Run BLAST on NCBI transcript from alignment at sc0000253:37098..38734- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00016871 ID=TCONS_00016871|Name=TCONS_00016871|organism=Clytia hemisphaerica|type=transcript|length=1637bp|location=Sequence derived from alignment at sc0000253:37098..38734- (Clytia hemisphaerica)
TCGTTAAAATGTTATAAATCAAAATAAAAACAATTATTTACTTTGTCCCA
TGACACGCGACCTAAATACAAAACAAAAGCGCAGCTTCTCTTTCTCTTAC
CAAGAGTAACTATTTTAGTTAAAAAGTATGCATAAAAATGAATGTCCTTT
TTCATATTGATAATTTAGCAATAAAATACCTTTGATGTCTCTAACAGCTC
CATGAAATATCCTTAAAATATTGTTATCTTACACAAGGAACAGTTATTGC
TGATTATTATCCATTTGTTTTACCAGTTCAAATTCATAGCTGTTTTCTTT
TACCAGTTGGGGTTTCCTGGAGGTCTCATACCGGGTGGAGGTCCTCCCAT
CATTCCTGGTGGTGGTGGCCCTCCTCGGCCATACTGTTGTGGTGGTGGAG
CCATTGCTNCTTGAATGATTCTAATCTTACTTTTTATTTTAAATTCATCT
GAAAATCAATAAGTATACAAGCAGAATATTTTATGCTCCTTAAAAATAGG
GATCAGAGAAAATAAATCGAGTACTTCCATATAACGAAATCTGGCCTTAA
AACCAAAACATAGGTTTGAAAGTAGTCGGCCAACATTTTTTAGGGATTTA
TTATGTCCGAAAAATGCAATATAAAGCACATGAATTTTGAAAAGGTGAAA
ATGATACAACCTTTAAATAATCAGGAATTTTGAAGGATTTCAGATTATAA
CGCAGTGGCTAATCTGAAGAAATTAAAAAGACAAAGTCGTTAAAATGTTA
TAAATCAAAATAAAAACAATTATTTACTTTGTCTCATGACACGCGACCTA
AATACAAAACAAAAGCGCAGCTTCTCTTTCTCTTACCAAGAGTAACTATT
TTGGTTAAAAAGTATGCATAAAAATGAATGTCCTTTTTCATATTGATAAT
TTAGCAATAAAACACCTTTGATGTCTCTAACAGCTCCATGAAATATCCTT
AAAATATTGTTATCTTACACAAGGAACAGTTATTGCTGATTATTATCCAT
TTGTTTTACCAGTTCAAATTCATAGCTGTTTTCTTTTACCAGTTGGGGTT
TCCTGGAGGTCTCATACCGGGTGGAGGTCCTCCCATCATTCCTGGTGGTG
GTGGCCCTCCTCGGCCATACTGTTGTGGTGGTGGAGCCATTGCTTGTTGT
GATGGGCCACCGACTCCACGAACGGGACCAGCCAGACCAGCAGGTGCAGC
TCCCATACTTGGTGTGGGCATTCCTCGGCCAGCTGCACGTCCCATACCAG
CGCCAGGGGTGGCTTTAGCAGCTGGTGTTTTGTTTCGGTCCTCTTTTGAT
GGAGGAGCTTCAACAGTCATTGAAACTAAATGTTCTCCTCTTAGTAAAAC
AAGACCAAGGGCACGTTTTTCCTCACGTCCCTTTTCGGAGCCGCCCTTGG
ATTTGATCTTCCTGAACTCATCACAGTCACCAAGAATAAGATTCATGTGT
TTGTCAAAAGCCAAGAATGTACCAATAAATAATCGACCATCTTGTAAATG
ACATCTCATTCTGTAGTTGATGTGTACCAACATTTTGGCACTCTTTCCTA
ATTGAGGCATCTTGATATTATTTTTCTATTAGTTCCCTGAAAAGATAAAT
AAACATAAAAATCGGTACAGTATTTCAACATGACATA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00016871-exon-sc0000253-1575043694:38368..38734 | TCONS_00016871-exon-sc0000253-1575043694:38368..38734 | Clytia hemisphaerica | exon |
| TCONS_00016871-exon-sc0000253-1575043694:37098..37658 | TCONS_00016871-exon-sc0000253-1575043694:37098..37658 | Clytia hemisphaerica | exon |
| TCONS_00016871-exon-sc0000253-1510915933:38368..38734 | TCONS_00016871-exon-sc0000253-1510915933:38368..38734 | Clytia hemisphaerica | exon |
| TCONS_00016871-exon-sc0000253-1510915933:37098..37658 | TCONS_00016871-exon-sc0000253-1510915933:37098..37658 | Clytia hemisphaerica | exon |
| TCONS_00016871-exon-sc0000253-1491911889:38368..38734 | TCONS_00016871-exon-sc0000253-1491911889:38368..38734 | Clytia hemisphaerica | exon |
| TCONS_00016871-exon-sc0000253-1491911889:37098..37658 | TCONS_00016871-exon-sc0000253-1491911889:37098..37658 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000253 | supercontig | sc0000253:37098..38734 - |
Blast
BLAST of TCONS_00016871 vs. Swiss-Prot (Human)
Match: RSMB (Small nuclear ribonucleoprotein-associated proteins B and B' OS=Homo sapiens GN=SNRPB PE=1 SV=2) HSP 1 Score: 153.295 bits (386), Expect = 4.636e-44 Identity = 89/135 (65.93%), Postives = 96/135 (71.11%), Query Frame = -3
Query: 447 LGKSAKMLVHINYRMRCHLQDGRLFIGTFLAFDKHMNLILGDCDEFRKIKSKGGSEKGREEKRALGLVLLRGEHLVSMTVEAPPSKED---RNKTPAAKXXXXXXXXXXXXXXXXTPSMGAAPAGLAGPVRGVGG 842
+GKS+KML HI+YRMRC LQDGR+FIGTF AFDKHMNLIL DCDEFRKIK K + REEKR LGLVLLRGE+LVSMTVE PP K+ R A PG G G P M APAGLAGPVRGVGG
Sbjct: 3 VGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGVP-MPQAPAGLAGPVRGVGG 136
The following BLAST results are available for this feature:
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