TCONS_00016845 (transcript) - C. hemisphaerica

Overview
NameTCONS_00016845
Unique NameTCONS_00016845
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1036

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00016845 ID=TCONS_00016845|Name=TCONS_00016845|organism=Clytia hemisphaerica|type=transcript|length=1036bp
aaAAGAATAGAAAGGGagaagtaaaaatatttttgccgtgACGCGGATAT
TTCGCTGATCAAAGAGAAAGCCTTGTTCGATTTTTAAGCCTTGTGATAGT
GACTagttattttaaatttggtgACCTTAGTGTACGGTTGATACAAGTTT
AGGATTGGTTGGAGTGCTTGACATACGTAAAAAACGATATCATCATATTG
GAGTAATGGGTAACGAAGAACACACGACGAGCTTTCAAGGGAAATTAACC
AAAACACTTCATTTAGGACAAGCAGGTGCCATTCTTGGATGTGGAATATC
CTACGATGACGAGACAGTCGCCAGCTGTGCCACAGATAACAAGGTCTTAC
TATGGGATGTAAATACCGGACAATGTCAAGGGTCATTAGACGGACACGCT
TCGGACGTAACGCGATGTTCGTTCGGAAAAGAGATTCTAGCTACAGGTTC
TCGTGATGGCACAGTCATCTTGTGGAGATACGCTGACAATAAAAGGTGTT
CCAAAATAACCGTCCACTCAACAGAAATCACGTCATGTACCATTTCGCCA
AACCACAAATATTTGTTGACGACTTCAGCAGACACTCACTGTCGTGTTTG
GACCATCAGAGGTGGAAATGGTGAATTCATACAAGGGCCAAAATTTATCG
AGTTGTTTCATGAAGGAGAGAAATATAAATTTAGTGATGCGTCATTTTCA
AGTGATTCATGTGCCATcgtgacgtcatcaactgatgGACAAGTCAAATT
GTGGGATTCAGAAAATGGCCAAAAGCTTTTAGACTTGTGCTCAGACGAAG
GTGAAATCTTAAGTGCTCGTTTTTCATCGGATGGCAAATACTTGATTACC
ATGGtcaaaaaatgtgtcaaaataTGGAATATCGCCAAGAAGAAAGTGTC
GTGGTCGATCGAAGATGCTAAGGGATTTCAGGCATTGGCATCACATTCAA
CAGAGAATATGTTCATTCTGATTGCTCAAGACGGCTCCATTTCAGGATAT
GACATCACTCACAAGCAAGAACTATTCAAAAGGTTA
Run BLAST on NCBI

transcript from alignment at sc0000253:82716..89850+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00016845 ID=TCONS_00016845|Name=TCONS_00016845|organism=Clytia hemisphaerica|type=transcript|length=7135bp|location=Sequence derived from alignment at sc0000253:82716..89850+ (Clytia hemisphaerica)
aaAAGAATAGAAAGGGagaagtaaaaatatttttgccgtgACGCGGATAT
TTCGCTGATCAAAGAGAAAGCCTTGTTCGATTTTTAAGCCTTGTGATAGT
GACTagttattttaaatttggtgACCTTAGTGTACGGTTGATACAAGTTT
AGGATTGGTGAGTCTTCTCTATACTTCGAAAGTTTGGGAATATTCAAATC
ATAGAGAATTCGATTTATGGAGGGCCATTTAAAGAACTTTGGTAACTGGA
TGAAGAGGTGTTATCAACAATGAGAGATTCTTTACATTATTAAGATTGAA
GTTCTGACTTTACAAGTCCATCCGATAGATTTCCGTTGCTTTGGAATACG
AAATTAACTGCCTTGTCTGTATTACAAGGGTTATATCATGCCACTATACT
TAGGAATAACACAAAAAGGCCGATACTCAAACTTATTTTAGCCAAAATGA
AAAGAACATAAGTTTTTACTTGTAAATTGTACTCCTTGTTAAGAATGAGT
TTTTGGTACTAAAAGTTTCATGCTGTCCGATATTTAAGTACCAAAAAACT
GCATCATTCTCCATAACGTAAAAAGCTCTGAGATATCACGGAGCACATTT
GACACCTAGCCTGGGTATCCAGACTCAAAATTTCAGAAAAAAACACCCTT
ACGTCAATATACAAAGTTTCTAAAATTTTAGAGTCTGGTGCAACTAAAAA
AATTGAGTACAGTTTGTTTGATACTGCCTGTGAGTGAACCCTTGTTGACA
GACAATCAAGACTTTGTAAACCCAGGCAGACACACATAATTAACTTACTA
TAAAACCTCTTTTACAAACTCAAAAAACTTTCAAAACTACTTTAAGCTAC
ATCAAAACATCAGGCACATTTGTAAGGGCTCCTTTCCAGCGGCCATTTTG
TTTAGAAATGAACCTGCGTTTTCATTTTCATTTGTTTATCTTTTTTTGCC
ACGTCAGCTTTTTCCATAAATTATGCCCGCGCATCGAAAAATATCACAAA
CCCCGCGAAAATTCTGCTCAGTGACTGGGCGTGTACTGACCAATTAGAGA
CACTGGCATATGCAGGGACAGATATCCTTGCAGACGAGTTACTTGGACCA
GACCGTAAACCAGAGACAAAATATTAAAAAAAAAACTAGACGGTGAAATA
GTTTACGGTCTGGATATCCAGGCTAATTTAAAACCAAGAAGAACTAGATT
TGTTATGAATCTTACTCTATATTGTGCATTTTCTTTATAGGTTGGAGTGC
TTGACATACGTAAAAAACGATATCATCATATTGGAGTAATGGGTAACGAA
GAACACACGACGAGCTTTCAAGGGAAATTAACCAAAACACTTCATTTAGG
ACAAGCAGGTGCCATTCTTGGATGTGGAATATCCTACGATGACGAGACAG
TCGCCAGCTGTGCCACAGATAACAAGGTATGGTACTTCTGATTTCACTGG
ATTTAAATTTGAGATCTAAATTAATGCAATTTTAACCGGGGTAAGACAAT
GAATTTCCAAGTTTTGACCGGGGGTACTGAATTTCAATAATTTTGACCGG
GGGTACAGAATTTCAATACTTTTGACCGGGTTACTGATTATCCCAACGAG
GGTTGATATTAGACCCCTTTTGGGAATCATTTTCACCGAGCTATCCACCG
GGCGGATTTCGCCGGGTCACTGATACAGATGTTTGTGATTGTCAACTAAC
GGATATAGAGCTACAAGCTGCCTGAAAGTGGCCTGTCCAAAAAAAGCAAA
TCTGTCCCTTAATAGATAGTTTTGACAACGAATTTTGGTCGATTTTAAGC
CACATTTCGATTAAAGATTTTGAGAACAATTAaagattgaaagtttttta
tttctatGACATTTAAATGGGAATAAGGTATACACCATTACCACTAACAC
ATACCATGTTTCACTCCCAGGGGTTGAACCAAGTTGGATTTTTGTCGCAT
CATTGACAATGACAAACTGATTTTGCGAGCGGGACAGTTTATAACGAGTT
TGTGAATGTGTGTTTTTTCTACGACGGAGACGGCTAGCATCTCATTTGTC
TAAatcctgatcaactgaggacgacgatAAACAAACACTTTTACTGTCCT
TGATTTCGCGGGTCAAAGCTGCAgtttattccaaatcgcttcatcaCTCT
GCCCTCCTCCAAAGCGCAAATATTCAAAAACTCTCTTGTAATATGATCTA
TAAGTCGAAAGGAAATTTTAAATACTGTCTCTCTTTTCTCCTACAGGTCT
TACTATGGGATGTAAATACCGGACAATGTCAAGGGTCATTAGACGGACAC
GCTTCGGACGTAACGCGATGTTCGTTCGGAAAAGAGATTCTAGCTACAGG
TTCTCGTGATGGCACAGTCATCTTGTGGAGATACGCTGACAATAAAAGGT
GTTCCAAAATAAGTAAGTTTAACCAGGCCAGCCAAAATCTtggattggag
tttttttgaagtggTAACCCTAATGGTTGCACTACTCAATAGTTCGGTTC
TCTACccgtttcaaattttgtttcactttttagttacattttttagtttt
tgttgatttacaCCAGCCTGTTTCTACTTAGTTGAAGAATATAGAAGCGC
GCAAAAGTatccttttttttttgagaaaaactcgAAGTTTGTTTTTAGTT
AAGTTGTCAGTAATTATGATAGTTTTAGAACTTTAAGCCTCTCGTGTTAT
GAGAAGGCGTCAAAACTGTCACTTTTTGTTCCATTCAATACGTGACTTTT
TAGAAAAGGTTGCTTGGTCATATTTCTAACTCAACTTTACTTTCTGATGA
TGCCGAATCCATTGGAAATATAAATATACACAGGATTCGCTATTTCAAAA
cactttcactttgaaaatttctacGAAATCTTGTATAGGGTTTTTTCTAT
CAAATACCCAACCTAATAATAGTATTTTCTGACCTTTAAAACCATTCTAA
TAGTTTATATTCAAGGCCTGTATTGGACGAACAGCCGACCCTCGGCTAAA
ATTGACTGGACCTCGCAAAATAGCGTGCATCCGACCCTCAGCTAAAATTG
ACTAGTACTCAAATAATAGCGTATATTTGGTCGGCTAAATCGCTTGACTC
ATTAATTGCAAAGATTGCCTGGTTCTGCTTTTACCGTGAAATAAAAGGAG
TCACTCACTTTCTTCGATTTCAAAAACGGCTGTACGTTATCTCTGTATCT
CTGTCGAATTTCTGCCCTATCCATTCTAATTGTAACAATAGGTAAAAAGT
TGGTAGttaaaattttgcttgaaaatgattgaaaaagtcaTTAACTTTAG
ACAACCAGCTTTCTGTCTACTTTCATTGACAACCAGGGGAAAGTGGGCCT
CAAAACCACGAGCTAATATAGCAAGGGGAACTTTTACCCAAAGAATAGAA
TGAAGCATATTAACCAGTGTTTTTTGTCTTTTCCAGCCGTCCACTCAACA
GAAATCACGTCATGTACCATTTCGCCAAACCACAAATATTTGTTGACGAC
TTCAGCAGACACTCACTGTCGTGTTTGGACCATCAGAGGTGGAAATGGTG
AATTCATACAAGGTACATGTTCTGTTATAAGAAATTAAAGcttcaaatta
tcaaaatgttaagaataagttaagaacatttcaagccTTTGCTAACTCTG
AAACACCCGATATTGTAGGAAATTTCACATAAAAATACTTATTGTGGgaa
catctttaggcttaaaattcagaAGGTTATGAAAATCTGAAgacaaaaat
tcttttgaaaaaaaagaattttggatgttcttataaatggTTTGAGGAAT
TTTCACCAACACACTGAGAATAATTTGATTGGGTTTACATACTTTCTTTA
TGAGCACAATTAGCAAAAACCAAAGGGATAGAAAACCACTTTGTTTAGTT
GCAAGTTTAGCTACTGTGATCGGAGGCGACCCTCTAACAGAAGGGCGCCC
ACTCTTTCTCCTGGATTGATCCACTTACCCTAGATGCTTCTCTTAATTAC
TGAGTTTCAAGCTTAGAGCGACATCAAGTACGTCTTTggagtctttggta
tgacccgtcCAAGAGATATAACCAACGACCTACTATACTGTTCTTTTTGA
AATAACCGGTTTCCTTCAATATTTTTCAGGGCCAAAATTTATCGAGTTGT
TTCATGAAGGAGAGAAATATAAATTTAGTGATGCGTCATTTTCAAGTGAT
TCATGTGCCATcgtgacgtcatcaactgatgGACAAGTCAAATTGTGGGA
TTCAGAAAATGGTAAGGTATTTCAATATAAAGTCccaataactcgaacac
gcacggagaACGCAAGTTTgttcaagtttttgaaatttcgagttatatag
aacctagtttataaggcactgttaactgaagggaccaggaAACTTTTTCC
AGTTGAAACATTCAATTGATACAGTTTCGAGTTACTGCACTGTGCGTCTC
TATGCTGACAATGAATAGAAAACAGAATAATTTTTCTAAACTTGTGGCTC
ACGTTGCTCGGAAAGAGGAGTAAattgttctttattttgtttaaaaatgc
ggTGTAAACAAATTGTAAGAAATAAGTTAATGATGATTCTCTTTAAACTC
CTATTCCATGGCATATATAGTTTTAAAATCTTCTTAACAATTGTTTTTCA
tataataatttttcaaaaattttctcattgaTAGGCCAAAAGCTTTTAGA
CTTGTGCTCAGACGAAGGTGAAATCTTAAGTGCTCGTTTTTCATCGGATG
GCAAATACTTGATTACCATGGtcaaaaaatgtgtcaaaataTGGAATATC
GCCAAGAAGAAAGTGTCGTGGTCGATCGAAGATGCTAAGGGATTTCAGGT
ATGACTTGTAatgattgaaaagataatcggATGGTATGAGATCTTTGGAC
TTTTTATTCTTTCTATGGTCCTCTGGATATCCTTCTTGCCTGACTATTTT
TTTAAGTTGAGATATTCAAATACCAATTTCAGATTTTCAGcaagaaaata
atataattcCAACTTGAAAACTGTTTTAAAGAACCCATTTTgagagattt
caaatttttggacctacctccgggtgccccggtggaggtcctatgaatta
acctctgtctgttcgtccgttcgttcgttcgttcgttcgttcgttcgNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNccctctccccccatcaacaatcaatgatgaattt
attgtgttgtgtattttcgctaaacgctatattttctgactgattttttt
catttttcttttcgtattgctatctaacttgaatcatcaggtaggtccat
tcagcatattgcttgtttATAACTCAAAGTTCTCTCATCTCCGACTGCTT
AGACGTTACAGTTTCGCTCCGGTACGGTTTTTCGTTACGGAACTTTTTGA
GGTAAGAAAACGGAGCaattccgttccgatgaaagtAGGGGGGGGGACAA
GTTTCGCATAATGACGTCTCTTTCCGAAGTTTTTTGTCGACACGGTTTTC
GTTTTGGAACGATGTAGAATCATATGTATGAGCATGATCTTAACGAGCTT
CAAATATATATTTGATGCTCTCTCTAAGTCGATTCGGGAATTGGATTTCC
ATCGAATGCAGGAGCATATCGAATAATAGGACGTCGAATAAGAGATCTGT
TATTTTTACTAACGGTGTTTTCTTGGTGTTTGCTATTAAAAACTTCATTA
TTATCAtggtttttatctttttttttcgagGCATTGGCATCACATTCAAC
AGAGAATATGTTCATTCTGATTGCTCAAGACGGCTCCATTTCAGGATATG
ACATCACTCACAAGCAAGAACTATTCAAAAGGTTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009434XLOC_009434Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00016845-exon-sc0000253-1491911889:82716..82872TCONS_00016845-exon-sc0000253-1491911889:82716..82872Clytia hemisphaericaexon
TCONS_00016845-exon-sc0000253-1510915933:82716..82872TCONS_00016845-exon-sc0000253-1510915933:82716..82872Clytia hemisphaericaexon
TCONS_00016845-exon-sc0000253-1575043694:82716..82872TCONS_00016845-exon-sc0000253-1575043694:82716..82872Clytia hemisphaericaexon
TCONS_00016845-exon-sc0000253-1491911889:83956..84141TCONS_00016845-exon-sc0000253-1491911889:83956..84141Clytia hemisphaericaexon
TCONS_00016845-exon-sc0000253-1510915933:83956..84141TCONS_00016845-exon-sc0000253-1510915933:83956..84141Clytia hemisphaericaexon
TCONS_00016845-exon-sc0000253-1575043694:83956..84141TCONS_00016845-exon-sc0000253-1575043694:83956..84141Clytia hemisphaericaexon
TCONS_00016845-exon-sc0000253-1491911889:84962..85127TCONS_00016845-exon-sc0000253-1491911889:84962..85127Clytia hemisphaericaexon
TCONS_00016845-exon-sc0000253-1510915933:84962..85127TCONS_00016845-exon-sc0000253-1510915933:84962..85127Clytia hemisphaericaexon
TCONS_00016845-exon-sc0000253-1575043694:84962..85127TCONS_00016845-exon-sc0000253-1575043694:84962..85127Clytia hemisphaericaexon
TCONS_00016845-exon-sc0000253-1491911889:86152..86277TCONS_00016845-exon-sc0000253-1491911889:86152..86277Clytia hemisphaericaexon
TCONS_00016845-exon-sc0000253-1510915933:86152..86277TCONS_00016845-exon-sc0000253-1510915933:86152..86277Clytia hemisphaericaexon
TCONS_00016845-exon-sc0000253-1575043694:86152..86277TCONS_00016845-exon-sc0000253-1575043694:86152..86277Clytia hemisphaericaexon
TCONS_00016845-exon-sc0000253-1491911889:86845..86976TCONS_00016845-exon-sc0000253-1491911889:86845..86976Clytia hemisphaericaexon
TCONS_00016845-exon-sc0000253-1510915933:86845..86976TCONS_00016845-exon-sc0000253-1510915933:86845..86976Clytia hemisphaericaexon
TCONS_00016845-exon-sc0000253-1575043694:86845..86976TCONS_00016845-exon-sc0000253-1575043694:86845..86976Clytia hemisphaericaexon
TCONS_00016845-exon-sc0000253-1491911889:87400..87563TCONS_00016845-exon-sc0000253-1491911889:87400..87563Clytia hemisphaericaexon
TCONS_00016845-exon-sc0000253-1510915933:87400..87563TCONS_00016845-exon-sc0000253-1510915933:87400..87563Clytia hemisphaericaexon
TCONS_00016845-exon-sc0000253-1575043694:87400..87563TCONS_00016845-exon-sc0000253-1575043694:87400..87563Clytia hemisphaericaexon
TCONS_00016845-exon-sc0000253-1491911889:89746..89850TCONS_00016845-exon-sc0000253-1491911889:89746..89850Clytia hemisphaericaexon
TCONS_00016845-exon-sc0000253-1510915933:89746..89850TCONS_00016845-exon-sc0000253-1510915933:89746..89850Clytia hemisphaericaexon
TCONS_00016845-exon-sc0000253-1575043694:89746..89850TCONS_00016845-exon-sc0000253-1575043694:89746..89850Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000253supercontigsc0000253:82716..89850 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.437887	0	0.921854	0	0	0	0.00309279	0	2.76814	1.43237	2.53165	0.366593	0.594023	1.07825	0	0	32.033	38.1515	4.17834	0.906177	21.9351	15.146	1.36782	1.31367	3.07417	0.772598	0.688999	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00016845 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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