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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00016836 ID=TCONS_00016836|Name=TCONS_00016836|organism=Clytia hemisphaerica|type=transcript|length=5483bpRun BLAST on NCBI transcript from alignment at sc0000253:32472..38690+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00016836 ID=TCONS_00016836|Name=TCONS_00016836|organism=Clytia hemisphaerica|type=transcript|length=6219bp|location=Sequence derived from alignment at sc0000253:32472..38690+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00016836 vs. Swiss-Prot (Human)
Match: YETS2 (YEATS domain-containing protein 2 OS=Homo sapiens GN=YEATS2 PE=1 SV=2) HSP 1 Score: 249.595 bits (636), Expect = 1.280e-66 Identity = 151/330 (45.76%), Postives = 202/330 (61.21%), Query Frame = 3
Query: 153 DPDYKDFYNSSNNDPNSARAADSKDLTVNKIESIVEKQFAXXXXXXXXXXXXXXQRINQTKSMLDRLRAYVAAGYFGSGGL--VVPGSKA----ITNEPK---------------------PKKQKSTADGLDPAATSLVLK----NMDKEKEPKNDESQEPEM---ADTNQPVSGE----------TD--SRFYVSKKLIVGNVSKYLLADSRKENDQSTHKWMVYVRTESGDDKEIEKYIKCVLFFLHPSYIPNDIVTVSKPPFQVTRRGWGEFPVRVQLHFRDARNKRFDVIHNLKLDKTYTGLQTLGAETIVNIELHKHANNENLI 1004
DPDY+D + N + A ++D V KIE+I+++QFALE++ KE EI+ I+QR+ + + M+D+LRA + A Y+ S GL V GSK + N P P S +D L L K NMD E+ N+ Q P DT++ ++G TD SR +V K ++VGNVSKY+ D R+ENDQSTHKWMVYVR S + I ++K V FFLHPSY PND+V V +PPF +TRRGWGEFPVRVQ+HF+D++NKR D+IHNLKLD+TYTGLQTLGAET+V++ELH+H+ E+ I
Sbjct: 12 DPDYEDVSVALPNKRHKAIENSARDAAVQKIETIIKEQFALEMKNKEHEIEVIDQRLIEARRMMDKLRACIVANYYASAGLLKVSEGSKTCDTMVFNHPAIKKFLESPSRSSSPANQRAETPSANHSESDSLSQHNDFLSDKDNNSNMDIEERLSNNMEQRPSRNTGRDTSR-ITGSHKTEQRNADLTDETSRLFVKKTIVVGNVSKYIPPDKREENDQSTHKWMVYVRG-SRREPSINHFVKKVWFFLHPSYKPNDLVEVREPPFHLTRRGWGEFPVRVQVHFKDSQNKRIDIIHNLKLDRTYTGLQTLGAETVVDVELHRHSLGEDCI 339 HSP 2 Score: 143.665 bits (361), Expect = 4.274e-34 Identity = 61/95 (64.21%), Postives = 80/95 (84.21%), Query Frame = 3
Query: 2649 PSTSYF--KIFIESXPSYIPNDIVTVSKPPFQVTRRGWGEFPVRVQLHFRDARNKRFDVIHNLKLDKTYTGLQTLGAETIVNIELHKHANNENLI 2927
PS ++F K++ PSY PND+V V +PPF +TRRGWGEFPVRVQ+HF+D++NKR D+IHNLKLD+TYTGLQTLGAET+V++ELH+H+ E+ I
Sbjct: 245 PSINHFVKKVWFFLHPSYKPNDLVEVREPPFHLTRRGWGEFPVRVQVHFKDSQNKRIDIIHNLKLDRTYTGLQTLGAETVVDVELHRHSLGEDCI 339 HSP 3 Score: 90.8929 bits (224), Expect = 5.475e-18 Identity = 80/291 (27.49%), Postives = 137/291 (47.08%), Query Frame = 3
Query: 3240 LYSLIQHAPLIATDGVKSKFFTCQSIELYESWHFTKRRAFEWYRASHLRK----LYAKNYQDMTRCP-STKEILVWLRQCGFTPPEKDLNVILRTLLCCRKCGKCLTRDHNKNTYCSNCKDKLYAPEPLPDSLSPYTSVLSNVQIKEETLQCLEKAVKQEESESDIDLDIVTVPSVLTVSKHSDIEASND---ILPTLAETWVSNVLYQFGIQIKPYVLG-NTKTPVVQAMLLRAMKLFMCQLLRKS-NIEAKTENTNTLEPALITFRQVHSAILKEPLFDFLTDAHLGKL 4082
L ++++ PLI + F+ +S+E Y W+ KRRA EW RA +RK + KN + P TK I W R G+TPP+ + R G + +D L + P+ S ++S N+ K E LQ +K ++ E+E ++D+ ++ P + + K + + + PT ++ +V + GI ++P L N VV+ M+L+A + + +LR++ + +T + N + P IT +H AI P DFLT+ H+G L
Sbjct: 1154 LTAVVKKIPLITAKSEDASCFSAKSVEQYYGWNIGKRRAAEWQRAMTMRKVLQEILEKNPRFHHLTPLKTKHIAHWCRCHGYTPPDPE---------SLRNDGDSI-------------EDVLTQIDSEPECPSSFSSA-DNLCRKLEDLQQFQK--REPENEEEVDILSLSEPVKINIKKEQEEKQEEVKFYLPPTPGSEFIGDVTQKIGITLQPVALHRNVYASVVEDMILKATEQLVNDILRQALAVGYQTASHNRI-PKEITVSNIHQAICNIPFLDFLTNKHMGIL 1418 HSP 4 Score: 89.7373 bits (221), Expect = 1.374e-17 Identity = 80/291 (27.49%), Postives = 136/291 (46.74%), Query Frame = 3
Query: 1317 LYSLIQHAPLIATDGVKSKFFTCQSIELYESWHFTKRRAFEWYRASHLRK----LYAKNYQDMTRCP-STKEILVWLRQCGFTPPEKDLNVILRTLLCCRKCGKCLTRDHNKNTYCSNCKDKLYAPEPLPDSLSPYTSVLSNVQIKEETLQCLEKAVKQEESESDIDLDIVKVPSVLTVSKHSDIEAPND---ILPTLAETWVSNVLYQFGIQIKPYVLG-NTKTPVVQAMLLRAMKLFMCQLLRKS-NIEAKTENTNTLEPALITFRQVHSAILKEPLFDFLTDAHLGKL 2159
L ++++ PLI + F+ +S+E Y W+ KRRA EW RA +RK + KN + P TK I W R G+TPP+ + R G + +D L + P+ S ++S N+ K E LQ +K ++ E+E ++D+ + P + + K + + + PT ++ +V + GI ++P L N VV+ M+L+A + + +LR++ + +T + N + P IT +H AI P DFLT+ H+G L
Sbjct: 1154 LTAVVKKIPLITAKSEDASCFSAKSVEQYYGWNIGKRRAAEWQRAMTMRKVLQEILEKNPRFHHLTPLKTKHIAHWCRCHGYTPPDPE---------SLRNDGDSI-------------EDVLTQIDSEPECPSSFSSA-DNLCRKLEDLQQFQK--REPENEEEVDILSLSEPVKINIKKEQEEKQEEVKFYLPPTPGSEFIGDVTQKIGITLQPVALHRNVYASVVEDMILKATEQLVNDILRQALAVGYQTASHNRI-PKEITVSNIHQAICNIPFLDFLTNKHMGIL 1418 The following BLAST results are available for this feature:
BLAST of TCONS_00016836 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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