TCONS_00016831 (transcript) - C. hemisphaerica

Overview
NameTCONS_00016831
Unique NameTCONS_00016831
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length493

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00016831 ID=TCONS_00016831|Name=TCONS_00016831|organism=Clytia hemisphaerica|type=transcript|length=493bp
ATCCTACATATAACGGAACCGGAACATCTCACTAAAATCAACAGCTACAG
TGTCAATATCAATATACTAATAAAGCTTGCCAACAAATTTACGATATTTT
CCCCAATACATCATAATGTTGATCCAATAATAGCAGAGGTCAATTTTCGG
AGGCTTAAATCCTACATTACCATCATNAGTTGATCCAATAATAGCAGAGG
TAAATTTTCGGAGGCTTAAATCCTACATTACCATCATTTTAGGATAATAG
CCTTTTGTTGTGCCGATGTTGGAAAACTTTCTCTTTTGTGACAGTTTCTA
GTGAAAAACGATCTTTCTTCTTGGTTACTTTGTCTTGCAATCAATTTATT
CACTTCTAGAAAGTCCAAATACaggcttttttatattgaagtcGGCTAAA
TAGAGAAATCCTTGTCAGTAAGACTATTAAATACTTTTAAATCAACATCT
ACGAACTCAAGACACCAGCTAATTTAACAAATTATACCAAGAa
Run BLAST on NCBI

transcript from alignment at sc0000252:369532..370024

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00016831 ID=TCONS_00016831|Name=TCONS_00016831|organism=Clytia hemisphaerica|type=transcript|length=493bp|location=Sequence derived from alignment at sc0000252:369532..370024 (Clytia hemisphaerica)
tTCTTGGTATAATTTGTTAAATTAGCTGGTGTCTTGAGTTCGTAGATGTT
GATTTAAAAGTATTTAATAGTCTTACTGACAAGGATTTCTCTATTTAGCC
gacttcaatataaaaaagcctGTATTTGGACTTTCTAGAAGTGAATAAAT
TGATTGCAAGACAAAGTAACCAAGAAGAAAGATCGTTTTTCACTAGAAAC
TGTCACAAAAGAGAAAGTTTTCCAACATCGGCACAACAAAAGGCTATTAT
CCTAAAATGATGGTAATGTAGGATTTAAGCCTCCGAAAATTTACCTCTGC
TATTATTGGATCAACTNATGATGGTAATGTAGGATTTAAGCCTCCGAAAA
TTGACCTCTGCTATTATTGGATCAACATTATGATGTATTGGGGAAAATAT
CGTAAATTTGTTGGCAAGCTTTATTAGTATATTGATATTGACACTGTAGC
TGTTGATTTTAGTGAGATGTTCCGGTTCCGTTATATGTAGGAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009428XLOC_009428Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00016831-exon-sc0000252-1491911889:369532..370024TCONS_00016831-exon-sc0000252-1491911889:369532..370024Clytia hemisphaericaexon
TCONS_00016831-exon-sc0000252-1510915933:369532..370024TCONS_00016831-exon-sc0000252-1510915933:369532..370024Clytia hemisphaericaexon
TCONS_00016831-exon-sc0000252-1575043694:369532..370024TCONS_00016831-exon-sc0000252-1575043694:369532..370024Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000252supercontigsc0000252:369532..370024 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.124922	0.487273	0.424328	0.553518	0.673855	0.931856	0.160606	0.451073	0.105269	0.260785	0.253125	0.0831971	0.166163	0	0	0.152247	0.375113	0.288359	0	0.555839	0.241563	0.706955	0	0.390658	0	0.359104	0.856462	0.548423	0.138653	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00016831 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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