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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00016828 ID=TCONS_00016828|Name=TCONS_00016828|organism=Clytia hemisphaerica|type=transcript|length=1751bp
CCCTAGTCAATAGTGTAGCAGTCTTTCGTGTGGAATGAAATAAAAACGCA
GGATCGTTTAGAATGATTGTCCATTTGGGACCATGTTTTTGTAATCCAGC
TTTGAGAAAATTATCCTCCATTGCGGAAAACGGGACTTTCGGGGCACGTT
TGTTTTGGCCTGGCTTTTTCTGCTCCGAACTTTGCTGATTTGGTGAGCTA
GTCGAACTATGCTGTAACTCTTGATTCTCCATAACAAAGTCCGTGATAGT
ATCCTTCTGTGGAATTAAAGTAGAAGGCGATTTTGAAATGTTGTGTAAAG
TTTCCAATCCTGCACTGTTATTGGTCAGTTTTGCAATCAACTCCTTAGCA
CTTTTGGCAATCTTTTGTGATTGAAGTTTTTGATAGTGAATCTTTGCGAC
ATGGGATGTGTGCTTTTGATCCAAGGAAATGGTAGCTTGTTCCTCAGAGG
TTAATTTTTCAGCACTTGCTGTCTCAATTATTTGTCTGTAGCGGGTAGGA
TTTATGTATTTTCCTATGGCTTGGTAAACTAGTCTCCCAAAAACATCACA
AATCCTTGTTAGCTGTTTCCCATTTCTTGTAATCAATAGAAAGTCGCATA
GAGGATTGAGTCGAGGCCTAACGCATTCGATGTAACCATTGACGATGTCT
ATGACAGTTCGatcaaaaatcaaagaatcaAAACCGTATTTCTCTTGAGT
TTTGAAAGTGCATTGGTCGATTATACCATCGCTTCCTATTGCAGAAATCA
TTTTGACAGTTAAAAATTGATAGCTCATCGGTCTTGCGGCCTTGACCATT
AAAAACAATACTGCGATAATGAAAGATGTGGCAAAAGAAAGTTCATGCGA
GGGTATAAAGCTTTCTTTGTTGTTCGCCATAAGTACCAGCTGTGCAAATC
TCTCTCCGTGAAATGGTATCNNNNNNNNNNNNNNNCTCACAACAGAACAT
AAGAAATTTCATAGCACGTGATACAATCTGCTCAGCCTGACTGATACCTT
TCGAGCCACCAACTAGACTCGATaaccaaaatttgaaagtttgtctcaaa
GTGCAATTCTTGTCAAAAGTTGGAATCTTTGACGTGTCTGATCTGTTCTT
TAAGGGTTTTACTAATGTCCTTATCTGCTCAGAGGGAAGAACAGCTCTAA
CGTCAGGCTTTTCgtcaaaataaaaataccaACCATGGTGTAAACACGTG
TGCTTTCTACAGCCTCGTTTACTTTTGAAAGAAGCATTTTCACAATCCAC
GATTGGACAATTAAAAAGTCCATCTTTATCTACCACAAGCTTTAATCGTT
TTGGTTTTTTCGAAGCCCCAACGGCAGTCTTCCATATTGATTTTGAATGT
CGTTTGTTGGAGGCCATCCTCCCAGCATTATGATCGATCAACGCAAATGG
CTTCCTTTTAAATCTGTTCCAATTCAATTAATGGTCGTTAGCGTGCTACA
ACGACATTGGACgaaaactatcaaaaagctaAACCTCCGGCAGCAGTTTC
TCAGTCTATTCGCTGGTTTAAAGAAGTTCTAAAGGAACAGGGGGTACTCC
TTTTAACTGTATTGTTCTGAACTTGCGTTGCGCGTCACGAAAAGGTGACA
TAAAATCAGAACCCATCTACGCTTAAAAAGAGGAACAGGAAGTTCcaata
aaaaaaagagaaatcatAATTTACAGACTGCAAAGTTCTGCTTTTTACAA
GCCACAAAAGTTTGTAAGAAAACGCAAAAGTTACTCTATGAGTTCCCTTT
A Run BLAST on NCBI protein sequence of TCONS_00016828-protein >TCONS_00016828-protein ID=TCONS_00016828-protein|Name=TCONS_00016828-protein|organism=Clytia hemisphaerica|type=polypeptide|length=293bp
MANNKESFIPSHELSFATSFIIAVLFLMVKAARPMSYQFLTVKMISAIGS
DGIIDQCTFKTQEKYGFDSLIFDRTVIDIVNGYIECVRPRLNPLCDFLLI
TRNGKQLTRICDVFGRLVYQAIGKYINPTRYRQIIETASAEKLTSEEQAT
ISLDQKHTSHVAKIHYQKLQSQKIAKSAKELIAKLTNNSAGLETLHNISK
SPSTLIPQKDTITDFVMENQELQHSSTSSPNQQSSEQKKPGQNKRAPKVP
FSAMEDNFLKAGLQKHGPKWTIILNDPAFLFHSTRKTATLLTR Run BLAST on NCBI transcript from alignment at sc0000252:345808..347558 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00016828 ID=TCONS_00016828|Name=TCONS_00016828|organism=Clytia hemisphaerica|type=transcript|length=1751bp|location=Sequence derived from alignment at sc0000252:345808..347558 (Clytia hemisphaerica)
TAAAGGGAACTCATAGAGTAACTTTTGCGTTTTCTTACAAACTTTTGTGG
CTTGTAAAAAGCAGAACTTTGCAGTCTGTAAATTatgatttctctttttt
ttattgGAACTTCCTGTTCCTCTTTTTAAGCGTAGATGGGTTCTGATTTT
ATGTCACCTTTTCGTGACGCGCAACGCAAGTTCAGAACAATACAGTTAAA
AGGAGTACCCCCTGTTCCTTTAGAACTTCTTTAAACCAGCGAATAGACTG
AGAAACTGCTGCCGGAGGTTtagctttttgatagttttcGTCCAATGTCG
TTGTAGCACGCTAACGACCATTAATTGAATTGGAACAGATTTAAAAGGAA
GCCATTTGCGTTGATCGATCATAATGCTGGGAGGATGGCCTCCAACAAAC
GACATTCAAAATCAATATGGAAGACTGCCGTTGGGGCTTCGAAAAAACCA
AAACGATTAAAGCTTGTGGTAGATAAAGATGGACTTTTTAATTGTCCAAT
CGTGGATTGTGAAAATGCTTCTTTCAAAAGTAAACGAGGCTGTAGAAAGC
ACACGTGTTTACACCATGGTtggtatttttattttgacGAAAAGCCTGAC
GTTAGAGCTGTTCTTCCCTCTGAGCAGATAAGGACATTAGTAAAACCCTT
AAAGAACAGATCAGACACGTCAAAGATTCCAACTTTTGACAAGAATTGCA
CtttgagacaaactttcaaattttggttATCGAGTCTAGTTGGTGGCTCG
AAAGGTATCAGTCAGGCTGAGCAGATTGTATCACGTGCTATGAAATTTCT
TATGTTCTGTTGTGAGNNNNNNNNNNNNNNNGATACCATTTCACGGAGAG
AGATTTGCACAGCTGGTACTTATGGCGAACAACAAAGAAAGCTTTATACC
CTCGCATGAACTTTCTTTTGCCACATCTTTCATTATCGCAGTATTGTTTT
TAATGGTCAAGGCCGCAAGACCGATGAGCTATCAATTTTTAACTGTCAAA
ATGATTTCTGCAATAGGAAGCGATGGTATAATCGACCAATGCACTTTCAA
AACTCAAGAGAAATACGGTTTtgattctttgatttttgatCGAACTGTCA
TAGACATCGTCAATGGTTACATCGAATGCGTTAGGCCTCGACTCAATCCT
CTATGCGACTTTCTATTGATTACAAGAAATGGGAAACAGCTAACAAGGAT
TTGTGATGTTTTTGGGAGACTAGTTTACCAAGCCATAGGAAAATACATAA
ATCCTACCCGCTACAGACAAATAATTGAGACAGCAAGTGCTGAAAAATTA
ACCTCTGAGGAACAAGCTACCATTTCCTTGGATCAAAAGCACACATCCCA
TGTCGCAAAGATTCACTATCAAAAACTTCAATCACAAAAGATTGCCAAAA
GTGCTAAGGAGTTGATTGCAAAACTGACCAATAACAGTGCAGGATTGGAA
ACTTTACACAACATTTCAAAATCGCCTTCTACTTTAATTCCACAGAAGGA
TACTATCACGGACTTTGTTATGGAGAATCAAGAGTTACAGCATAGTTCGA
CTAGCTCACCAAATCAGCAAAGTTCGGAGCAGAAAAAGCCAGGCCAAAAC
AAACGTGCCCCGAAAGTCCCGTTTTCCGCAATGGAGGATAATTTTCTCAA
AGCTGGATTACAAAAACATGGTCCCAAATGGACAATCATTCTAAACGATC
CTGCGTTTTTATTTCATTCCACACGAAAGACTGCTACACTATTGACTAGG
G Coding sequence (CDS) from alignment at sc0000252:345808..347558 >TCONS_00016828 ID=TCONS_00016828|Name=TCONS_00016828|organism=Clytia hemisphaerica|type=CDS|length=879bp|location=Sequence derived from alignment at sc0000252:345808..347558 (Clytia hemisphaerica)
ATGGCGAACAACAAAGAAAGCTTTATACCCTCGCATGAACTTTCTTTTGC
CACATCTTTCATTATCGCAGTATTGTTTTTAATGGTCAAGGCCGCAAGAC
CGATGAGCTATCAATTTTTAACTGTCAAAATGATTTCTGCAATAGGAAGC
GATGGTATAATCGACCAATGCACTTTCAAAACTCAAGAGAAATACGGTTT
tgattctttgatttttgatCGAACTGTCATAGACATCGTCAATGGTTACA
TCGAATGCGTTAGGCCTCGACTCAATCCTCTATGCGACTTTCTATTGATT
ACAAGAAATGGGAAACAGCTAACAAGGATTTGTGATGTTTTTGGGAGACT
AGTTTACCAAGCCATAGGAAAATACATAAATCCTACCCGCTACAGACAAA
TAATTGAGACAGCAAGTGCTGAAAAATTAACCTCTGAGGAACAAGCTACC
ATTTCCTTGGATCAAAAGCACACATCCCATGTCGCAAAGATTCACTATCA
AAAACTTCAATCACAAAAGATTGCCAAAAGTGCTAAGGAGTTGATTGCAA
AACTGACCAATAACAGTGCAGGATTGGAAACTTTACACAACATTTCAAAA
TCGCCTTCTACTTTAATTCCACAGAAGGATACTATCACGGACTTTGTTAT
GGAGAATCAAGAGTTACAGCATAGTTCGACTAGCTCACCAAATCAGCAAA
GTTCGGAGCAGAAAAAGCCAGGCCAAAACAAACGTGCCCCGAAAGTCCCG
TTTTCCGCAATGGAGGATAATTTTCTCAAAGCTGGATTACAAAAACATGG
TCCCAAATGGACAATCATTCTAAACGATCCTGCGTTTTTATTTCATTCCA
CACGAAAGACTGCTACACTATTGACTAGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00016828-exon-sc0000252-1491911889:345808..347558 | TCONS_00016828-exon-sc0000252-1491911889:345808..347558 | Clytia hemisphaerica | exon |
| TCONS_00016828-exon-sc0000252-1510915933:345808..347558 | TCONS_00016828-exon-sc0000252-1510915933:345808..347558 | Clytia hemisphaerica | exon |
| TCONS_00016828-exon-sc0000252-1575043694:345808..347558 | TCONS_00016828-exon-sc0000252-1575043694:345808..347558 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000252 | supercontig | sc0000252:345808..347558 . |
Blast
The following BLAST results are available for this feature:
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