TCONS_00016827 (transcript) - C. hemisphaerica

Overview
NameTCONS_00016827
Unique NameTCONS_00016827
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length884

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00016827 ID=TCONS_00016827|Name=TCONS_00016827|organism=Clytia hemisphaerica|type=transcript|length=884bp
NCCTCATTCGGAAAAGGCCGTCCGAATATCATCCTCCAATCGCACGTTCG
GAAATCGTCCATCCAGCGTCCGTTGTCCTCCCAAATTTATCGTTTCCGGG
AATCACCCTATCCGGAATTCTCTCCTACCGTATCGTCACAGATACTCCAT
TTCGTTCAGATACCGCACCCAGCGTCGTATCGTTTTATCGGTATACACAC
CAAATTGTATACAATCCATCATTTCGTTGTTGATTCTCCCGTTGCAAACG
CCACTTCCGCCCCGCCTCGTTCTCATACGTGGTTCGCCCTCAATCGTGGT
CCACCCTCATCCTCAATAGTGGTCTACTTTATCAATCGCAGTTCACTTTC
GTTTGAATTGTCTTCCGCCCTCGATTATTAATCGCTACCGGCCGTCGTTC
AATTTGCAGCCCGCTCTTGTTTCCAATCGTGATCCGCCCCGTTGTAATTC
GTGGTCCGCCCTCATTTGCAATCGTTGTTTGTTCTCGTTATCAATCGTGG
TTCAGCCTTGTTATCAATCGTCGGCCGCCCTTTTCATCAGTGGTCTACAC
TCGTTCCCAATCGGGACCGCCCTTGTGTCCAATCGAGCGTTTATTCAATA
CCGCCCGTCGTATTCGTCTGTGGTATACGCAACTACCACATCAGTTGACT
AATCCGTGGACTACCTGTTCTTTATTCAACCTTGCTTCATCACCGTCCAG
ACCATCATGTCAATCCGGAGATCTCAAAGAATTGCAGGACAAGGGCCTGA
TCATTCCACTGACCTAGCCAAACTGATATCTCTAAGGAACACTCGAAGAG
GTCTTCTGGGATATCTTACACGGGTGGCAAATCAAATCTTATCCTACCTG
AATGATCAAGATGCATCGAGTGCGTCTACGTTGC
Run BLAST on NCBI

protein sequence of TCONS_00016827-protein

>TCONS_00016827-protein ID=TCONS_00016827-protein|Name=TCONS_00016827-protein|organism=Clytia hemisphaerica|type=polypeptide|length=126bp
XSFGKGRPNIILQSHVRKSSIQRPLSSQIYRFRESPYPEFSPTVSSQILH
FVQIPHPASYRFIGIHTKLYTIHHFVVDSPVANATSAPPRSHTWFALNRG
PPSSSIVVYFINRSSLSFELSSALDY
Run BLAST on NCBI

transcript from alignment at sc0000252:338360..339243

Legend: exonthree_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00016827 ID=TCONS_00016827|Name=TCONS_00016827|organism=Clytia hemisphaerica|type=transcript|length=884bp|location=Sequence derived from alignment at sc0000252:338360..339243 (Clytia hemisphaerica)
GCAACGTAGACGCACTCGATGCATCTTGATCATTCAGGTAGGATAAGATT
TGATTTGCCACCCGTGTAAGATATCCCAGAAGACCTCTTCGAGTGTTCCT
TAGAGATATCAGTTTGGCTAGGTCAGTGGAATGATCAGGCCCTTGTCCTG
CAATTCTTTGAGATCTCCGGATTGACATGATGGTCTGGACGGTGATGAAG
CAAGGTTGAATAAAGAACAGGTAGTCCACGGATTAGTCAACTGATGTGGT
AGTTGCGTATACCACAGACGAATACGACGGGCGGTATTGAATAAACGCTC
GATTGGACACAAGGGCGGTCCCGATTGGGAACGAGTGTAGACCACTGATG
AAAAGGGCGGCCGACGATTGATAACAAGGCTGAACCACGATTGATAACGA
GAACAAACAACGATTGCAAATGAGGGCGGACCACGAATTACAACGGGGCG
GATCACGATTGGAAACAAGAGCGGGCTGCAAATTGAACGACGGCCGGTAG
CGATTAATAATCGAGGGCGGAAGACAATTCAAACGAAAGTGAACTGCGAT
TGATAAAGTAGACCACTATTGAGGATGAGGGTGGACCACGATTGAGGGCG
AACCACGTATGAGAACGAGGCGGGGCGGAAGTGGCGTTTGCAACGGGAGA
ATCAACAACGAAATGATGGATTGTATACAATTTGGTGTGTATACCGATAA
AACGATACGACGCTGGGTGCGGTATCTGAACGAAATGGAGTATCTGTGAC
GATACGGTAGGAGAGAATTCCGGATAGGGTGATTCCCGGAAACGATAAAT
TTGGGAGGACAACGGACGCTGGATGGACGATTTCCGAACGTGCGATTGGA
GGATGATATTCGGACGGCCTTTTCCGAATGAGGN

Coding sequence (CDS) from alignment at sc0000252:338360..339243

>TCONS_00016827 ID=TCONS_00016827|Name=TCONS_00016827|organism=Clytia hemisphaerica|type=CDS|length=381bp|location=Sequence derived from alignment at sc0000252:338360..339243 (Clytia hemisphaerica)
TTAATAATCGAGGGCGGAAGACAATTCAAACGAAAGTGAACTGCGATTGA
TAAAGTAGACCACTATTGAGGATGAGGGTGGACCACGATTGAGGGCGAAC
CACGTATGAGAACGAGGCGGGGCGGAAGTGGCGTTTGCAACGGGAGAATC
AACAACGAAATGATGGATTGTATACAATTTGGTGTGTATACCGATAAAAC
GATACGACGCTGGGTGCGGTATCTGAACGAAATGGAGTATCTGTGACGAT
ACGGTAGGAGAGAATTCCGGATAGGGTGATTCCCGGAAACGATAAATTTG
GGAGGACAACGGACGCTGGATGGACGATTTCCGAACGTGCGATTGGAGGA
TGATATTCGGACGGCCTTTTCCGAATGAGGN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009424XLOC_009424Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00016827-exon-sc0000252-1491911889:338360..339243TCONS_00016827-exon-sc0000252-1491911889:338360..339243Clytia hemisphaericaexon
TCONS_00016827-exon-sc0000252-1510915933:338360..339243TCONS_00016827-exon-sc0000252-1510915933:338360..339243Clytia hemisphaericaexon
TCONS_00016827-exon-sc0000252-1575043694:338360..339243TCONS_00016827-exon-sc0000252-1575043694:338360..339243Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00016827-proteinTCONS_00016827-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000252supercontigsc0000252:338360..339243 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.44636	1.95468	1.85049	0.849107	4.92697	3.1388	2.28672	2.18088	0.684466	1.95172	1.37979	1.26749	0.856878	1.09766	0.438403	0.880312	0.201781	0.725264	0.215506	0.199627	0.974181	0.997427	0.620922	0.649176	0.766767	1.77644	2.23624	2.83656	0.968534	0.857327
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00016827 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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