TCONS_00016820 (transcript) - C. hemisphaerica

Overview
NameTCONS_00016820
Unique NameTCONS_00016820
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length698

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00016820 ID=TCONS_00016820|Name=TCONS_00016820|organism=Clytia hemisphaerica|type=transcript|length=698bp
ATATAATCAAACCAAGTGGTTGCGGTGATTGGCTTTGACACGTGAAGAAC
AAAAAGCATCATTTGAAGAACCTTTTTCAATCCTTCGACAGGGTGAATTA
AAGGTGCTTCTGGATAAATCATCTCTGGGAATTTCGACAGAACACTTGCT
AACCATTGTTTGATGTCAGTGCGCATGTCAATAAAATGATGACTTTGTAT
TGTGAGCTTTTCTTCTTCTAAACAGACAACAGGAAAAAATGTCCAGCCCG
GTCCGAACTGGTCACCTAAGTATTCTTCGAAAAAGCTTAGGTATTCATCA
AGTTGATCAACAGCGTGTCCTGCCTGTTTCATACTCCGCTTCATCTCAAC
ACCGATGATCAACTTTCTTGACCAAGAGAAAATAAGGAGGTCAAACTCTC
GGCTCATACGATTTTTGAggtttctgaaaatatcagtgtTAGTAAGAATA
ACAAGGTCCAGCAAAGCATCAGCATTTATATCGTTGTTTTCCAAGGCTAA
TTGGTCGAAAAACCAACGCTCAACCTTCTCACCCCTGACTGAGAAAGACA
TATCAAATATCCATCGAATTTTTGAATCTCTTGGACGATTACTTTGAATA
AATTCATTGCTCATTTTATTGCACgattttcttccatttcttgaCCTTGA
AAATCTTGAGAGCTCTTCTGTAAGCTCCGACTCTGGTGCGATCCGTCT
Run BLAST on NCBI

transcript from alignment at sc0000252:245640..246337

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00016820 ID=TCONS_00016820|Name=TCONS_00016820|organism=Clytia hemisphaerica|type=transcript|length=698bp|location=Sequence derived from alignment at sc0000252:245640..246337 (Clytia hemisphaerica)
AGACGGATCGCACCAGAGTCGGAGCTTACAGAAGAGCTCTCAAGATTTTC
AAGGtcaagaaatggaagaaaatcGTGCAATAAAATGAGCAATGAATTTA
TTCAAAGTAATCGTCCAAGAGATTCAAAAATTCGATGGATATTTGATATG
TCTTTCTCAGTCAGGGGTGAGAAGGTTGAGCGTTGGTTTTTCGACCAATT
AGCCTTGGAAAACAACGATATAAATGCTGATGCTTTGCTGGACCTTGTTA
TTCTTACTAacactgatattttcagaaaccTCAAAAATCGTATGAGCCGA
GAGTTTGACCTCCTTATTTTCTCTTGGTCAAGAAAGTTGATCATCGGTGT
TGAGATGAAGCGGAGTATGAAACAGGCAGGACACGCTGTTGATCAACTTG
ATGAATACCTAAGCTTTTTCGAAGAATACTTAGGTGACCAGTTCGGACCG
GGCTGGACATTTTTTCCTGTTGTCTGTTTAGAAGAAGAAAAGCTCACAAT
ACAAAGTCATCATTTTATTGACATGCGCACTGACATCAAACAATGGTTAG
CAAGTGTTCTGTCGAAATTCCCAGAGATGATTTATCCAGAAGCACCTTTA
ATTCACCCTGTCGAAGGATTGAAAAAGGTTCTTCAAATGATGCTTTTTGT
TCTTCACGTGTCAAAGCCAATCACCGCAACCACTTGGTTTGATTATAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009417XLOC_009417Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00016820-exon-sc0000252-1491911889:245640..246337TCONS_00016820-exon-sc0000252-1491911889:245640..246337Clytia hemisphaericaexon
TCONS_00016820-exon-sc0000252-1510915933:245640..246337TCONS_00016820-exon-sc0000252-1510915933:245640..246337Clytia hemisphaericaexon
TCONS_00016820-exon-sc0000252-1575043694:245640..246337TCONS_00016820-exon-sc0000252-1575043694:245640..246337Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000252supercontigsc0000252:245640..246337 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0.173695	0.284481	1.41144	0.708379	1.1647	0.149208	0.436316	2.26762	5.64085	1.37583	0.0711462	1.45073	0.742263	2.10081	2.97576	0	0	0.204082	0	0	0.107274	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00016820 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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