TCONS_00016818 (transcript) - C. hemisphaerica

Overview
NameTCONS_00016818
Unique NameTCONS_00016818
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1062

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00016818 ID=TCONS_00016818|Name=TCONS_00016818|organism=Clytia hemisphaerica|type=transcript|length=1062bp
catgatatgcaccattgcaatgtcttccgttccacccaatagctgattgg
ttgaaagtgacgtattgactgattttacgtcacttccaaccaatgagcta
ttggttctgcgacgtaatgtcagaagacattgcagtggtgcatatcatga
atagacaaAACTCTTCctgtaaaaaatttaatttcttctcttcaaaaatt
gtgtttcTATATATAATAATGTTGTTCTATGTTTACGAATTTCTAACTTT
ACATCTGTAAACCATTAacctttcttcaaattttgcttcGTCACATTACA
GTCACAAAGTAGAAGTAAAACAAAAACTGTGGTACAATGGATAGGTATAA
TATTCACAGTCAAACTGAGCATCTGCAATCTAAGTATGTTGGCACTGGTC
ACGCAGATACTACACGTTGGGATTGGCTTGTCAACCAACACAGGGATAGC
GTTGCATCTTATGTTGGGCACAACAACTTGTTAGATTATTTTGCCATTGC
TGAGAATGAGACTCGAGGACGTGTCAAATTCAACTTGATGAAGAAGATGT
TACAACCTTGTGGCAAACCACCAGAGAGACCAGACTGGGATTAAGAGATG
ATTAAAATCCTTATAGTGGGAACACTTGGTGCATGAAGACTCctggattt
aaattttttatattttacatcTAGATCTAAAGTCTTCTTATGATGAAAAT
GAgcgaaaaaaggttttttatttATGAAGAATAATCTGTTTCTCGTCCTT
CTAAGAATCAATGCTAATTACATGCTCTAGATTTTGTTCACTTTCTGATT
AGACATACCGGGTACATTGCAAAAAATACTTAACActtttcaaaggtttt
caaagtttaaagGTTCTACAAATATCAGAGAAATTTTTTTGCAtctgaaa
aaaggaaagaatgacttaaattttgatggataatttatcaaatttggtaa
aGATGATAAAATTGCCGGATTTTTTATTGTGAATGGTTTAAAATGAACTG
AATTCTACAAAATGAAATTTAGAATTATGGTTTTGGTATTTCTCCTGAGA
TGTTTGCGATAG
Run BLAST on NCBI

transcript from alignment at sc0000252:176347..177408

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00016818 ID=TCONS_00016818|Name=TCONS_00016818|organism=Clytia hemisphaerica|type=transcript|length=1062bp|location=Sequence derived from alignment at sc0000252:176347..177408 (Clytia hemisphaerica)
CTATCGCAAACATCTCAGGAGAAATACCAAAACCATAATTCTAAATTTCA
TTTTGTAGAATTCAGTTCATTTTAAACCATTCACAATAAAAAATCCGGCA
ATTTTATCATCtttaccaaatttgataaattatccatcaaaatttaagtc
attctttccttttttcagaTGCAAAAAAATTTCTCTGATATTTGTAGAAC
ctttaaactttgaaaacctttgaaaagTGTTAAGTATTTTTTGCAATGTA
CCCGGTATGTCTAATCAGAAAGTGAACAAAATCTAGAGCATGTAATTAGC
ATTGATTCTTAGAAGGACGAGAAACAGATTATTCTTCATaaataaaaaac
cttttttcgcTCATTTTCATCATAAGAAGACTTTAGATCTAgatgtaaaa
tataaaaaatttaaatccagGAGTCTTCATGCACCAAGTGTTCCCACTAT
AAGGATTTTAATCATCTCTTAATCCCAGTCTGGTCTCTCTGGTGGTTTGC
CACAAGGTTGTAACATCTTCTTCATCAAGTTGAATTTGACACGTCCTCGA
GTCTCATTCTCAGCAATGGCAAAATAATCTAACAAGTTGTTGTGCCCAAC
ATAAGATGCAACGCTATCCCTGTGTTGGTTGACAAGCCAATCCCAACGTG
TAGTATCTGCGTGACCAGTGCCAACATACTTAGATTGCAGATGCTCAGTT
TGACTGTGAATATTATACCTATCCATTGTACCACAGTTTTTGTTTTACTT
CTACTTTGTGACTGTAATGTGACgaagcaaaatttgaagaaaggtTAATG
GTTTACAGATGTAAAGTTAGAAATTCGTAAACATAGAACAACATTATTAT
ATATAgaaacacaatttttgaagagaagaaattaaattttttacagGAAG
AGTTttgtctattcatgatatgcaccactgcaatgtcttctgacattacg
tcgcagaaccaatagctcattggttggaagtgacgtaaaatcagtcaata
cgtcactttcaaccaatcagctattgggtggaacggaagacattgcaatg
gtgcatatcatg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009416XLOC_009416Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00016818-exon-sc0000252-1491911889:176347..177408TCONS_00016818-exon-sc0000252-1491911889:176347..177408Clytia hemisphaericaexon
TCONS_00016818-exon-sc0000252-1510915933:176347..177408TCONS_00016818-exon-sc0000252-1510915933:176347..177408Clytia hemisphaericaexon
TCONS_00016818-exon-sc0000252-1575043694:176347..177408TCONS_00016818-exon-sc0000252-1575043694:176347..177408Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000252supercontigsc0000252:176347..177408 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
93.9801	92.6407	114.251	119.109	103.401	78.9621	105.604	109.286	111.97	93.2287	104.034	98.2958	68.0744	78.9105	87.124	86.8274	94.4046	101.544	54.4741	54.5917	62.247	57.5299	64.9022	61.5626	85.1209	80.6102	82.2791	79.1363	44.0135	46.1571
Blast
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BLAST of TCONS_00016818 vs. Swiss-Prot (Human)
Match: SF3B5 (Splicing factor 3B subunit 5 OS=Homo sapiens GN=SF3B5 PE=1 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.286e-41
Identity = 61/82 (74.39%), Postives = 74/82 (90.24%), Query Frame = 1 
Query:  340 DRYNIHSQTEHLQSKYVGTGHADTTRWDWLVNQHRDSVASYVGHNNLLDYFAIAENETRGRVKFNLMKKMLQPCGKPPERPD 585
            DRY IHSQ EHLQSKY+GTGHADTT+W+WLVNQHRDS  SY+GH +LL+YFAIAENE++ RV+FNLM+KMLQPCG P ++P+
Sbjct:    3 DRYTIHSQLEHLQSKYIGTGHADTTKWEWLVNQHRDSYCSYMGHFDLLNYFAIAENESKARVRFNLMEKMLQPCGPPADKPE 84
The following BLAST results are available for this feature:
BLAST of TCONS_00016818 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SF3B51.286e-4174.39Splicing factor 3B subunit 5 OS=Homo sapiens GN=SF... [more]
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