|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00016803 ID=TCONS_00016803|Name=TCONS_00016803|organism=Clytia hemisphaerica|type=transcript|length=3961bpRun BLAST on NCBI transcript from alignment at sc0000252:308702..322049+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00016803 ID=TCONS_00016803|Name=TCONS_00016803|organism=Clytia hemisphaerica|type=transcript|length=13348bp|location=Sequence derived from alignment at sc0000252:308702..322049+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00016803 vs. Swiss-Prot (Human)
Match: AT1A3 (Sodium/potassium-transporting ATPase subunit alpha-3 OS=Homo sapiens GN=ATP1A3 PE=1 SV=3) HSP 1 Score: 1475.69 bits (3819), Expect = 0.000e+0 Identity = 746/981 (76.04%), Postives = 842/981 (85.83%), Query Frame = 1
Query: 376 HSSDLDTLLKDYETSLEKGLTNEKAAANLERDGPNALTPPKTTPEWVKFCQQLFGGFSMLLWIGAILCFAAFTVRYFREEDPAMDELYLGIVLAVVVIITGCFSYYQEAKSSKIMESFKKMIPQEATVLRGGTKLNINAENCVVGDIVFVKFGDRVPADIRILEAQGFKVDNSSLTGESEPQSRTPECSSENPLETKNLAFFSTNAVEGTATGVVINIGDNTVMGRIANLASGLGSGKTPIAIELEHFIHIITGVAVFLGVTFLIISLALGYHWLEAIIFLIGIIVANVPEGXXXXXXXXXXXXXKKMAAKNCLVKHLEAVETLGSTSVICSDKTGTLTQNRMTVAHMWFDRMIIQADTTEDQSGISHDKGSETWQALAKIGALCNRAEFKDGQEDLPILRKECNGDASETAILKFVELSVGDVMGTRSRNSKVIEIPFNSTNKYQVSIHKQESETDKRYLLVMKGAPERILDRCSTILLQGEEKPLDDEMKEAFNEAYXXXXXXXXXXXXFCHYYLPEDQFPAGFEFVAEDKANFPLDNLCFVGLMSMIXXXXXXXXXXXXKCRSAGIKVIMVTGDHPITAKAIAKGVGIISEGNETVEDIAQRLNIPVSEVNARDAHAAVVHGTQLKDYSQEDIDDVLKYHSEVVFARTSPQQKLIIVEGCQRQGAIVAVTGDGVNDSPALKKADIGVAMGIAGSDVSKQAADMILLDDNFASIVTGVEEGRLIFDNLKKSIAYTLTSNIPEISPFLMFILLSIPLPLGTITILCIDLGTDLVPAISLAYEKAESDIMKRKPRDPIRDKLVNERLISLAYGQIGMIQAIAGFFTYFVIMAENGWLPTYLVGIRSQWDDKQNNAVRDSYGSEWSYVQRKNLELTCHTAFFTTIVVVQWADVIISKTRKLSVFQQGMNNWMLNFGLVFETVLAAFLQYTPGLNEGLKLRPLNASWWFCGVPFSLLIWVYDEIRRYLIRKYPGGWVEHETYY 3318
H ++ + + Y T +GLT+ KA L RDGPNALTPP TTPEWVKFC+QLFGGFS+LLWIGAILCF A+ ++ E+DP+ D LYLGIVLA VVIITGCFSYYQEAKSSKIMESFK M+PQ+A V+R G K+ +NAE VVGD+V +K GDRVPAD+RI+ A G KVDNSSLTGESEPQ+R+P+C+ +NPLET+N+ FFSTN VEGTA GVV+ GD TVMGRIA LASGL GKTPIAIE+EHFI +ITGVAVFLGV+F I+SL LGY WLEA+IFLIGIIVANVPEGLLATVTVCLTLTAK+MA KNCLVK+LEAVETLGSTS ICSDKTGTLTQNRMTVAHMWFD I +ADTTEDQSG S DK S TW AL+ I LCNRA FK GQ+++P+L+++ GDASE+A+LK +ELS G V R RN KV EIPFNSTNKYQ+SIH+ E D RYLLVMKGAPERILDRCSTILLQG+E+PLD+EMKEAF AYLELGGLGERVLGFCHYYLPE+QFP GF F +D NF DNLCFVGLMSMIDPPRAAVPDAV KCRSAGIKVIMVTGDHPITAKAIAKGVGIISEGNETVEDIA RLNIPVS+VN RDA A V+HGT LKD++ E ID++L+ H+E+VFARTSPQQKLIIVEGCQRQGAIVAVTGDGVNDSPALKKADIGVAMGIAGSDVSKQAADMILLDDNFASIVTGVEEGRLIFDNLKKSIAYTLTSNIPEI+PFL+FI+ +IPLPLGTITILCIDLGTD+VPAISLAYE AESDIMKR+PR+P DKLVNERLIS+AYGQIGMIQA+ GFF+YFVI+AENG+LP LVGIR WDD+ N + DSYG +W+Y QRK +E TCHTAFF +IVVVQWAD+II KTR+ SVFQQGM N +L FGL ET LAAFL Y PG++ L++ PL SWWFC P+S LI+VYDEIR+ ++R+ PGGWVE ETYY
Sbjct: 34 HKMSVEEVCRKYNTDCVQGLTHSKAQEILARDGPNALTPPPTTPEWVKFCRQLFGGFSILLWIGAILCFLAYGIQAGTEDDPSGDNLYLGIVLAAVVIITGCFSYYQEAKSSKIMESFKNMVPQQALVIREGEKMQVNAEEVVVGDLVEIKGGDRVPADLRIISAHGCKVDNSSLTGESEPQTRSPDCTHDNPLETRNITFFSTNCVEGTARGVVVATGDRTVMGRIATLASGLEVGKTPIAIEIEHFIQLITGVAVFLGVSFFILSLILGYTWLEAVIFLIGIIVANVPEGLLATVTVCLTLTAKRMARKNCLVKNLEAVETLGSTSTICSDKTGTLTQNRMTVAHMWFDNQIHEADTTEDQSGTSFDKSSHTWVALSHIAGLCNRAVFKGGQDNIPVLKRDVAGDASESALLKCIELSSGSVKLMRERNKKVAEIPFNSTNKYQLSIHETEDPNDNRYLLVMKGAPERILDRCSTILLQGKEQPLDEEMKEAFQNAYLELGGLGERVLGFCHYYLPEEQFPKGFAFDCDD-VNFTTDNLCFVGLMSMIDPPRAAVPDAVGKCRSAGIKVIMVTGDHPITAKAIAKGVGIISEGNETVEDIAARLNIPVSQVNPRDAKACVIHGTDLKDFTSEQIDEILQNHTEIVFARTSPQQKLIIVEGCQRQGAIVAVTGDGVNDSPALKKADIGVAMGIAGSDVSKQAADMILLDDNFASIVTGVEEGRLIFDNLKKSIAYTLTSNIPEITPFLLFIMANIPLPLGTITILCIDLGTDMVPAISLAYEAAESDIMKRQPRNPRTDKLVNERLISMAYGQIGMIQALGGFFSYFVILAENGFLPGNLVGIRLNWDDRTVNDLEDSYGQQWTYEQRKVVEFTCHTAFFVSIVVVQWADLIICKTRRNSVFQQGMKNKILIFGLFEETALAAFLSYCPGMDVALRMYPLKPSWWFCAFPYSFLIFVYDEIRKLILRRNPGGWVEKETYY 1013 The following BLAST results are available for this feature:
BLAST of TCONS_00016803 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.