TCONS_00016778 (transcript) - C. hemisphaerica

Overview
NameTCONS_00016778
Unique NameTCONS_00016778
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2188

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00016778 ID=TCONS_00016778|Name=TCONS_00016778|organism=Clytia hemisphaerica|type=transcript|length=2188bp
gtgATTGTCATAGTTTACACGCGTTAAAGATTATCATTTTAATTTGCTAG
CTGATCGTTTCTTCGCAGCTTTGAGGATAAATTTTGGAGCTGTAAGAGCT
GGGTTGTTTTGAGATTCACTCTTGAACTTTTCTTAGAAGTTCTTTGTTTT
GTAACTCTGGGAGAAGAAGCCTTTCATATCGACCAGACTTTTTTTAAGGA
GATATAGAACCATTGATGTTTTATACGAAACTTCCAACGTATACAAGAGT
TATCACCATCAAAAAGCTACAGAATCTTAACAGAAGGACACTATAACTGG
ACAtatcaatttcaaaaaagtggGAAAAAAAACTTTGATATAATAAGCAC
TATAATCACCTGACAAGTCAAATCAGATTAACACGAACTTCAGAGCTTGC
AAATGAATATTTCAGCTTAATGCACAGACAATACGTTCTCATTGTTCTAC
TGTGATCAAATATTCTATGTATAAGTGATAAAAACAACGAGAAATTATGA
TAAGTCAATTGGAGAGACGTTTAAACGGTGACTTGCTACACTTGGAATTT
TTCAACAGAAATCTCAAGAAGAAAGACACTGATAGAGACCAGAGAAACGC
TACTTTTCAAATCGGCGACGAAGATGCCAATTACAAACCTTCACGTAATG
CTTTGAAACAGTTTAGTAAAACACAGAACAACACTTCTTTTCATATCGGA
GATGACGAAGATATCGATGATCCGTTCGGTNCAGAACAACACTTCTTTTC
ATATCGGAGATGACGAAGATAACGATGATCCGTTCGGTGAAATACCATTG
AAAACAAGTAAGAGATACTATCCTAGAGATTCGACCGTTCACGATCCACC
CTTTGGTGTTGAAAAAACGATGGAGAAAGAAAACCTCAAACCCATCCCGA
CCTCACCATTCAAGCTTCAAAGAACATGTCCGCAGAAAATTGTTCCAGCT
CAGAAACTCGGTTTCACTGCACCTCGCTCCGATTACGGGCTTACACAAAA
TAAAGAATTGTTCAAAGAGAGACttcaagaaatcaaaaagagtTTAATCT
CAAATAGTCTCATTCAATTACCAGTCACAGACCCCGACCATCAACCCACC
AAATGGCATTTCCGTAGACAACGTACTCTTTCCGATCCATCTTTAAATTA
TACGGAGCAGTACCACGATGATACGGATCTCCCACGTAGAGTAAAAAAAC
CGAACGCTGCAGAATTACACAGACAGTTCTATTACCAGTCTGTTTTAAAT
GCAGAGAAGAACAAACAAGAGAGGGAGCTATTGGATGAAGAACAAAGAGC
GAGGGTGGATTTCCTTACGCCCAATGGAAGCGCCATCCAAGATAGTGTAC
CGCCTGCACCTTCCCCAAAAGAGTTGCAAAAACTGACGTACCAAAGCGAA
CAGAGAGATAAACGCCGTCAAAAGAAACAACTGAAGCATAATGCTTACAA
GAATTTTTATTTCTCCAACTTGGCCTATGGTTCAGATAACCTACCAGAGA
GCACTCCTCCCCCGCCTGCACCGTTCGGTCGCTCTTTTAGCGAATCAGGC
GGCCGTTCGCATCATCGCTCGGAACCGATTTCCTTGAGCTTAGGATACAG
ATTATGTGACTTGGATCCAGGACGCCATGATTCTCTGTCAAGTGAAATAG
ACTCAATGGAAGATGTGTTTGACCGGATGTCGGTGCAATCGAGTGGCAGT
GACGAGCAAAAAGCCTCAATGATGGTGGATAGTGAGATTTCTTGCTGTGA
CGAGGTATGATGTCTGTATGTGCATGTTGTGTTTTGTATGAATGTTATCG
TATTGTTTTCTGGTTGtttttatttgtgttttttCGCTCGGATGTCACAG
AACAATGTCATAAATGTTTTCCTGTGTGTTCCTTGTGTTGTTGGAAACAG
ACATCATGAATATAAGTACAAGTGAGATATTATAGTGACGATCTGTTCGT
TTGCTCTACATAAAGCTTTAAATGTGGAACTTGTTTAAACTGTGGATTTG
GGTGAcggaaaaatttgttttcgatATCCTacgaattttcaaaagtttcg
gacatacattagaatttagaatttttgataCTGAATACCGCATTGATTTG
ACAATGCTATAAGCTATCATCTCAATTATTTAATAATTTAATGCtctttt
atgactttttttataACAGCAATAAAATTACTTAACTC
Run BLAST on NCBI

protein sequence of TCONS_00016778-protein

>TCONS_00016778-protein ID=TCONS_00016778-protein|Name=TCONS_00016778-protein|organism=Clytia hemisphaerica|type=polypeptide|length=352bp
MTKISMIRSXQNNTSFHIGDDEDNDDPFGEIPLKTSKRYYPRDSTVHDPP
FGVEKTMEKENLKPIPTSPFKLQRTCPQKIVPAQKLGFTAPRSDYGLTQN
KELFKERLQEIKKSLISNSLIQLPVTDPDHQPTKWHFRRQRTLSDPSLNY
TEQYHDDTDLPRRVKKPNAAELHRQFYYQSVLNAEKNKQERELLDEEQRA
RVDFLTPNGSAIQDSVPPAPSPKELQKLTYQSEQRDKRRQKKQLKHNAYK
NFYFSNLAYGSDNLPESTPPPPAPFGRSFSESGGRSHHRSEPISLSLGYR
LCDLDPGRHDSLSSEIDSMEDVFDRMSVQSSGSDEQKASMMVDSEISCCD
EV
Run BLAST on NCBI

transcript from alignment at sc0000252:33045..36169+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00016778 ID=TCONS_00016778|Name=TCONS_00016778|organism=Clytia hemisphaerica|type=transcript|length=3125bp|location=Sequence derived from alignment at sc0000252:33045..36169+ (Clytia hemisphaerica)
gtgATTGTCATAGTTTACACGCGTTAAAGATTATCATTTTAATTTGCTAG
CTGATCGTTTCTTCGCAGCTTTGAGGATAAATTTTGGAGCTGTAAGAGCT
GGGTTGTTTTGAGATTCACTCTTGAACTTTTCTTAGAAGTTCTTTGTTTT
GTAACTCTGGGAGAAGAAGCCTTTCATATCGACCAGACTTTTTTTAAGGA
GATATAGAACCATTGATGTTTTATACGAAACTTCCAACGTATACAAGAGT
TATCACCATCAAAAAGCTACAGAATCTTAACAGAAGGACACTATAACTGG
ACAtatcaatttcaaaaaagtggGAAAAAAAAGCTTNAGTCCTGATGTTC
CAGTTCTTCCTAGTTTTCTTCAGCTAAGATAATAGGTTACAGTGCAGAAT
TCTTGCTCTAGTTTACAATTAGAGGTATATTCTGGGGTAGGTTATTGAAA
ATGCTTGCTCTTTCGGGTTCATTTTTGAAGATTGGTTTTCAACAAtattg
ttgttgttattattcACATCAATCACCACATATAGCAGTACTTTATTAAT
CTTTCTTGatgattattttaaagattcGAAATTGTATACCGAGTAATTCT
GAAAAATTAATCAGCGTTcttgaaaaaagtaaatattGCATTGATTGCTT
CATAATAATGGCATCTTTGATTGAAAATCATATGTTTGCCCGTTGAAGTA
TaaatgaatgtttgaaaaatttaacatttattaaattcCAATTATAGCGT
CTTCAAAGATTTTCTTTCAATTATTTTAGCGTTTATTGCACTCGTGTACa
ttcaaaatctagctaaatgAAATTGTACACAGTTGTTTGACCGAGGAAGA
ATTAAACTGAATGTGAGTTTTGAATATCTCTCTGTTGTATCTCCATTCAA
GACAGAGAGCAGAAaagtttgttttaatttttgattgtgATTGTCATAGT
TTACACGCGTTAAAGATTATCATTTTAATTTGCTAGCTGATCGTTTCTTC
GCAGCTTTGAGGATAAATTTTGGAGCTGTAAGAGCTGGGTTGTTTTGAGA
TTCACTCTTGAACTTTTCTTAGAAGTTCTTTGTTTTGTAACTCTGGGAGA
AGAAGCCTTTCATATCGACCAGACTTTTTTTAAGGAGATATAGAACCATT
GATGTTTTATACGAAACTTCCAACGTATACAAGAGTTATCACCATCAAAA
AGCTACAGAATCTTAACAGAAGGACACTATAACTGGACAtatcaatttca
aaaaagtggGAAAAAAAAGCTTTGATATAATAAGCACTATAATCACCTGA
CAAGTCAAATCAGATTAACACGAACTTCAGAGCTTGCAAATGAATATTTC
AGCTTAATGCACAGACAATACGTTCTCATTGTTCTACTGTGATCAAATAT
TCTATGTATAAGTGATAAAAACAACGAGAAATTATGATAAGTCAATTGGA
GAGACGTTTAAACGGTGACTTGCTACACTTGGAATTTTTCAACAGAAATC
TCAAGAAGAAAGACACTGATAGAGACCAGAGAAACGCTACTTTTCAAATC
GGCGACGAAGATGCCAATTACAAACCTTCACGTAATGCTTTGAAACAGTT
TAGTAAAACACAGAACAACACTTCTTTTCATATCGGAGATGACGAAGATA
TCGATGATCCGTTCGGTNCAGAACAACACTTCTTTTCATATCGGAGATGA
CGAAGATAACGATGATCCGTTCGGTGAAATACCATTGAAAACAAGTAAGA
GATACTATCCTAGAGATTCGACCGTTCACGATCCACCCTTTGGTGTTGAA
AAAACGATGGAGAAAGAAAACCTCAAACCCATCCCGACCTCACCATTCAA
GCTTCAAAGAACATGTCCGCAGAAAATTGTTCCAGCTCAGAAACTCGGTT
TCACTGCACCTCGCTCCGATTACGGGCTTACACAAAATAAAGAATTGTTC
AAAGAGAGACttcaagaaatcaaaaagagtTTAATCTCAAATAGTCTCAT
TCAATTACCAGTCACAGACCCCGACCATCAACCCACCAAATGGCATTTCC
GTAGACAACGTACTCTTTCCGATCCATCTTTAAATTATACGGAGCAGTAC
CACGATGATACGGATCTCCCACGTAGAGTAAAAAAACCGAACGCTGCAGA
ATTACACAGACAGTTCTATTACCAGTCTGTTTTAAATGCAGAGAAGAACA
AACAAGAGAGGGAGCTATTGGATGAAGAACAAAGAGCGAGGGTGGATTTC
CTTACGCCCAATGGAAGCGCCATCCAAGATAGTGTACCGCCTGCACCTTC
CCCAAAAGAGTTGCAAAAACTGACGTACCAAAGCGAACAGAGAGATAAAC
GCCGTCAAAAGAAACAACTGAAGCATAATGCTTACAAGAATTTTTATTTC
TCCAACTTGGCCTATGGTTCAGATAACCTACCAGAGAGCACTCCTCCCCC
GCCTGCACCGTTCGGTCGCTCTTTTAGCGAATCAGGCGGCCGTTCGCATC
ATCGCTCGGAACCGATTTCCTTGAGCTTAGGATACAGATTATGTGACTTG
GATCCAGGACGCCATGATTCTCTGTCAAGTGAAATAGACTCAATGGAAGA
TGTGTTTGACCGGATGTCGGTGCAATCGAGTGGCAGTGACGAGCAAAAAG
CCTCAATGATGGTGGATAGTGAGATTTCTTGCTGTGACGAGGTATGATGT
CTGTATGTGCATGTTGTGTTTTGTATGAATGTTATCGTATTGTTTTCTGG
TTGtttttatttgtgttttttCGCTCGGATGTCACAGAACAATGTCATAA
ATGTTTTCCTGTGTGTTCCTTGTGTTGTTGGAAACAGACATCATGAATAT
AAGTACAAGTGAGATATTATAGTGACGATCTGTTCGTTTGCTCTACATAA
AGCTTTAAATGTGGAACTTGTTTAAACTGTGGATTTGGGTGAcggaaaaa
tttgttttcgatATCCTacgaattttcaaaagtttcggacatacattaga
atttagaatttttgataCTGAATACCGCATTGATTTGACAATGCTATAAG
CTATCATCTCAATTATTTAATAATTTAATGCtcttttatgacttttttta
taACAGCAATAAAATTACTTAACTC

Coding sequence (CDS) from alignment at sc0000252:33045..36169+

>TCONS_00016778 ID=TCONS_00016778|Name=TCONS_00016778|organism=Clytia hemisphaerica|type=CDS|length=1059bp|location=Sequence derived from alignment at sc0000252:33045..36169+ (Clytia hemisphaerica)
ATGACGAAGATATCGATGATCCGTTCGGTNCAGAACAACACTTCTTTTCA
TATCGGAGATGACGAAGATAACGATGATCCGTTCGGTGAAATACCATTGA
AAACAAGTAAGAGATACTATCCTAGAGATTCGACCGTTCACGATCCACCC
TTTGGTGTTGAAAAAACGATGGAGAAAGAAAACCTCAAACCCATCCCGAC
CTCACCATTCAAGCTTCAAAGAACATGTCCGCAGAAAATTGTTCCAGCTC
AGAAACTCGGTTTCACTGCACCTCGCTCCGATTACGGGCTTACACAAAAT
AAAGAATTGTTCAAAGAGAGACttcaagaaatcaaaaagagtTTAATCTC
AAATAGTCTCATTCAATTACCAGTCACAGACCCCGACCATCAACCCACCA
AATGGCATTTCCGTAGACAACGTACTCTTTCCGATCCATCTTTAAATTAT
ACGGAGCAGTACCACGATGATACGGATCTCCCACGTAGAGTAAAAAAACC
GAACGCTGCAGAATTACACAGACAGTTCTATTACCAGTCTGTTTTAAATG
CAGAGAAGAACAAACAAGAGAGGGAGCTATTGGATGAAGAACAAAGAGCG
AGGGTGGATTTCCTTACGCCCAATGGAAGCGCCATCCAAGATAGTGTACC
GCCTGCACCTTCCCCAAAAGAGTTGCAAAAACTGACGTACCAAAGCGAAC
AGAGAGATAAACGCCGTCAAAAGAAACAACTGAAGCATAATGCTTACAAG
AATTTTTATTTCTCCAACTTGGCCTATGGTTCAGATAACCTACCAGAGAG
CACTCCTCCCCCGCCTGCACCGTTCGGTCGCTCTTTTAGCGAATCAGGCG
GCCGTTCGCATCATCGCTCGGAACCGATTTCCTTGAGCTTAGGATACAGA
TTATGTGACTTGGATCCAGGACGCCATGATTCTCTGTCAAGTGAAATAGA
CTCAATGGAAGATGTGTTTGACCGGATGTCGGTGCAATCGAGTGGCAGTG
ACGAGCAAAAAGCCTCAATGATGGTGGATAGTGAGATTTCTTGCTGTGAC
GAGGTATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009391XLOC_009391Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00016778-proteinTCONS_00016778-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00016778-exon-sc0000252-1491911889:33045..33376TCONS_00016778-exon-sc0000252-1491911889:33045..33376Clytia hemisphaericaexon
TCONS_00016778-exon-sc0000252-1510915933:33045..33376TCONS_00016778-exon-sc0000252-1510915933:33045..33376Clytia hemisphaericaexon
TCONS_00016778-exon-sc0000252-1575043694:33045..33376TCONS_00016778-exon-sc0000252-1575043694:33045..33376Clytia hemisphaericaexon
TCONS_00016778-exon-sc0000252-1491911889:34314..36169TCONS_00016778-exon-sc0000252-1491911889:34314..36169Clytia hemisphaericaexon
TCONS_00016778-exon-sc0000252-1510915933:34314..36169TCONS_00016778-exon-sc0000252-1510915933:34314..36169Clytia hemisphaericaexon
TCONS_00016778-exon-sc0000252-1575043694:34314..36169TCONS_00016778-exon-sc0000252-1575043694:34314..36169Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000252supercontigsc0000252:33045..36169 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.166029	0.048334	0.298374	0.417027	0.179261	0.0790977	0.0921925	0.0966294	0.0467634	0.0935612	0.290601	0.780612	7.45092	5.47407	2.88635	6.3337	3.40906	4.439	0	0.0598251	4.00576	4.39186	6.0222	6.16491	6.69035	8.56555	10.213	11.2196	0.174338	0.168688
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00016778 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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