TCONS_00016776 (transcript) - C. hemisphaerica

Overview
NameTCONS_00016776
Unique NameTCONS_00016776
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length213

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00016776 ID=TCONS_00016776|Name=TCONS_00016776|organism=Clytia hemisphaerica|type=transcript|length=213bp
TTCCGCAATCACAACGAGTACGACAACGAGAACgtgaaaacatcaaattc
acaCCTTTGAGCTGTCAAAACTTGACAAAACTCTGAGTAAACCCCAATTT
CTCGTTGTCTCTTCTCGTGCCCGACGGCAAATCACTCATTTTGGCGTTGT
CAGACAACGTGAGATTTCTAACATAAAAATCAACATCAAGCAAAAAGTAA
GACAATTTTGAAG
Run BLAST on NCBI

transcript from alignment at sc0000248:322143..322355

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00016776 ID=TCONS_00016776|Name=TCONS_00016776|organism=Clytia hemisphaerica|type=transcript|length=213bp|location=Sequence derived from alignment at sc0000248:322143..322355 (Clytia hemisphaerica)
CTTCAAAATTGTCTTACTTTTTGCTTGATGTTGATTTTTATGTTAGAAAT
CTCACGTTGTCTGACAACGCCAAAATGAGTGATTTGCCGTCGGGCACGAG
AAGAGACAACGAGAAATTGGGGTTTACTCAGAGTTTTGTCAAGTTTTGAC
AGCTCAAAGGtgtgaatttgatgttttcacGTTCTCGTTGTCGTACTCGT
TGTGATTGCGGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009389XLOC_009389Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00016776-exon-sc0000248-1491911889:322143..322355TCONS_00016776-exon-sc0000248-1491911889:322143..322355Clytia hemisphaericaexon
TCONS_00016776-exon-sc0000248-1510915933:322143..322355TCONS_00016776-exon-sc0000248-1510915933:322143..322355Clytia hemisphaericaexon
TCONS_00016776-exon-sc0000248-1575043694:322143..322355TCONS_00016776-exon-sc0000248-1575043694:322143..322355Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000248supercontigsc0000248:322143..322355 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	3.71534	7.33978	3.54205	4.97404	3.48244	2.87571	2.79124	9.17424	1.8323	3.80572	4.69323	0.839425	1.0341	8.47938	5.85736	3.06465	2.66374	0	1.57944	0	2.95798	0	0	4.03169	3.05789	3.11551
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00016776 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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