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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00016770 ID=TCONS_00016770|Name=TCONS_00016770|organism=Clytia hemisphaerica|type=transcript|length=1354bp
GCCAAATAACATTTTCTTGCGACTGGATTGACCAATTTGGAGAGTTCGAC
TTCAGCTTTTGAGAAAGAATATCTCCAAGTTATTCCAATGTTATCGTCTG
TTTGAGATTTGGCAACAAAATGACTCCCTCCTTCTACAATTCTATCAACT
TCTTCAGGACTTGGCCAAAAACGGCCGGTGCGCTCTTTCCAGTCGCTCAC
ACTTGGCCAGCTTGCTTTAATACCAAAAGTAAGATCAGCTAAAAACCCAT
CGTTGGCAATAGGTGGACAACAAAAGTCATACATAAGGAACGTCCCAGTT
TTCATATTAATAGCAGGTCCTTGCTGTTTTACTTTTACTGCCGTTAAATT
GCAGCAACAGTTTCTTGATCCTTGTGGATAATTTTTTAGTTTAGTCCTTG
AAACTATCAGATAGAAAATTTTCTTGACCGATCCAgcattgaaaaataaa
tcattaCTATCATTAAATCGTGTCAATAAACCAAGGATAGAAGAAACCGG
CCTTCCATCGTCATAAAAGCAATTATATCCATACTCTGTCAATTTTAAAG
CTGCATAACCAGGCTGTACATAGTCTGTAGAAATAACTTCAAAATGTACT
TCTGTTTGTAAAGAACCATTACATGCTCTCAGATCtttaaaacaaaacat
caaatcaaaatcTGTAAAAAGCGCATATTTGAAGGAAATGTTTTTACGAA
AGTATTTTTTCACCCAGTCGGATAATATTGGCAAGCCAAACCTTTCTACT
GCACTTCCAGTGAATAGAATTTCAATCGGGGCATTTAGAAACCAATTTTC
AAGAGCTAAACGATATTTCTCAATACCTTTGTCCAAGCAAATTTGTTTTA
GGTTTGATAACTCCCTGTCTGTCGGTATATCTCTGTCAATATCTTGTAAA
AGCTCTTTTAAGTTGAACTTTGTTTGTCTGACACAGCTGCAACAAAGGCG
AGTACCACAGCAAAGTGATGGAGCTCTCTTAATATAAGTCGGTAAAAATC
CAAGGATCACTCCAAAAATTATGCTAACGATTAAAAAGTATATGTAAGTT
TGGTTGACAGGGATAATATCTGCTAGGTGAAGTGATAAATCAAGTAAAAG
TAGAGCCAATTGATGGACAAGATAGTACCAGCGAATGCATTTGAAATAGC
GATGTCCATGCCCTACGTATCGAGTACAACATGCGATAGTACAGAGCAAA
ATGATGCTCGATGTACCACCTACCATAATGGTTGGCGATAAACTTAATCG
ATTTAGCGTATCGATTTCCTCATTAATTGAATCTAGTTTTTTCAGTGTTT
CATCTTCCATACTTCTGCTGTAATGAAACTTCGAAATGATATGTATGATG
TTCG Run BLAST on NCBI protein sequence of TCONS_00016770-protein >TCONS_00016770-protein ID=TCONS_00016770-protein|Name=TCONS_00016770-protein|organism=Clytia hemisphaerica|type=polypeptide|length=450bp
NIIHIISKFHYSRSMEDETLKKLDSINEEIDTLNRLSLSPTIMVGGTSSI
ILLCTIACCTRYVGHGHRYFKCIRWYYLVHQLALLLLDLSLHLADIIPVN
QTYIYFLIVSIIFGVILGFLPTYIKRAPSLCCGTRLCCSCVRQTKFNLKE
LLQDIDRDIPTDRELSNLKQICLDKGIEKYRLALENWFLNAPIEILFTGS
AVERFGLPILSDWVKKYFRKNISFKYALFTDFDLMFCFKDLRACNGSLQT
EVHFEVISTDYVQPGYAALKLTEYGYNCFYDDGRPVSSILGLLTRFNDSN
DLFFNAGSVKKIFYLIVSRTKLKNYPQGSRNCCCNLTAVKVKQQGPAINM
KTGTFLMYDFCCPPIANDGFLADLTFGIKASWPSVSDWKERTGRFWPSPE
EVDRIVEGGSHFVAKSQTDDNIGITWRYSFSKAEVELSKLVNPVARKCYL Run BLAST on NCBI transcript from alignment at sc0000248:250711..252064 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00016770 ID=TCONS_00016770|Name=TCONS_00016770|organism=Clytia hemisphaerica|type=transcript|length=1354bp|location=Sequence derived from alignment at sc0000248:250711..252064 (Clytia hemisphaerica)
CGAACATCATACATATCATTTCGAAGTTTCATTACAGCAGAAGTATGGAA
GATGAAACACTGAAAAAACTAGATTCAATTAATGAGGAAATCGATACGCT
AAATCGATTAAGTTTATCGCCAACCATTATGGTAGGTGGTACATCGAGCA
TCATTTTGCTCTGTACTATCGCATGTTGTACTCGATACGTAGGGCATGGA
CATCGCTATTTCAAATGCATTCGCTGGTACTATCTTGTCCATCAATTGGC
TCTACTTTTACTTGATTTATCACTTCACCTAGCAGATATTATCCCTGTCA
ACCAAACTTACATATACTTTTTAATCGTTAGCATAATTTTTGGAGTGATC
CTTGGATTTTTACCGACTTATATTAAGAGAGCTCCATCACTTTGCTGTGG
TACTCGCCTTTGTTGCAGCTGTGTCAGACAAACAAAGTTCAACTTAAAAG
AGCTTTTACAAGATATTGACAGAGATATACCGACAGACAGGGAGTTATCA
AACCTAAAACAAATTTGCTTGGACAAAGGTATTGAGAAATATCGTTTAGC
TCTTGAAAATTGGTTTCTAAATGCCCCGATTGAAATTCTATTCACTGGAA
GTGCAGTAGAAAGGTTTGGCTTGCCAATATTATCCGACTGGGTGAAAAAA
TACTTTCGTAAAAACATTTCCTTCAAATATGCGCTTTTTACAgattttga
tttgatgttttgttttaaaGATCTGAGAGCATGTAATGGTTCTTTACAAA
CAGAAGTACATTTTGAAGTTATTTCTACAGACTATGTACAGCCTGGTTAT
GCAGCTTTAAAATTGACAGAGTATGGATATAATTGCTTTTATGACGATGG
AAGGCCGGTTTCTTCTATCCTTGGTTTATTGACACGATTTAATGATAGta
atgatttatttttcaatgcTGGATCGGTCAAGAAAATTTTCTATCTGATA
GTTTCAAGGACTAAACTAAAAAATTATCCACAAGGATCAAGAAACTGTTG
CTGCAATTTAACGGCAGTAAAAGTAAAACAGCAAGGACCTGCTATTAATA
TGAAAACTGGGACGTTCCTTATGTATGACTTTTGTTGTCCACCTATTGCC
AACGATGGGTTTTTAGCTGATCTTACTTTTGGTATTAAAGCAAGCTGGCC
AAGTGTGAGCGACTGGAAAGAGCGCACCGGCCGTTTTTGGCCAAGTCCTG
AAGAAGTTGATAGAATTGTAGAAGGAGGGAGTCATTTTGTTGCCAAATCT
CAAACAGACGATAACATTGGAATAACTTGGAGATATTCTTTCTCAAAAGC
TGAAGTCGAACTCTCCAAATTGGTCAATCCAGTCGCAAGAAAATGTTATT
TGGC Coding sequence (CDS) from alignment at sc0000248:250711..252064 >TCONS_00016770 ID=TCONS_00016770|Name=TCONS_00016770|organism=Clytia hemisphaerica|type=CDS|length=1350bp|location=Sequence derived from alignment at sc0000248:250711..252064 (Clytia hemisphaerica)
AACATCATACATATCATTTCGAAGTTTCATTACAGCAGAAGTATGGAAGA
TGAAACACTGAAAAAACTAGATTCAATTAATGAGGAAATCGATACGCTAA
ATCGATTAAGTTTATCGCCAACCATTATGGTAGGTGGTACATCGAGCATC
ATTTTGCTCTGTACTATCGCATGTTGTACTCGATACGTAGGGCATGGACA
TCGCTATTTCAAATGCATTCGCTGGTACTATCTTGTCCATCAATTGGCTC
TACTTTTACTTGATTTATCACTTCACCTAGCAGATATTATCCCTGTCAAC
CAAACTTACATATACTTTTTAATCGTTAGCATAATTTTTGGAGTGATCCT
TGGATTTTTACCGACTTATATTAAGAGAGCTCCATCACTTTGCTGTGGTA
CTCGCCTTTGTTGCAGCTGTGTCAGACAAACAAAGTTCAACTTAAAAGAG
CTTTTACAAGATATTGACAGAGATATACCGACAGACAGGGAGTTATCAAA
CCTAAAACAAATTTGCTTGGACAAAGGTATTGAGAAATATCGTTTAGCTC
TTGAAAATTGGTTTCTAAATGCCCCGATTGAAATTCTATTCACTGGAAGT
GCAGTAGAAAGGTTTGGCTTGCCAATATTATCCGACTGGGTGAAAAAATA
CTTTCGTAAAAACATTTCCTTCAAATATGCGCTTTTTACAgattttgatt
tgatgttttgttttaaaGATCTGAGAGCATGTAATGGTTCTTTACAAACA
GAAGTACATTTTGAAGTTATTTCTACAGACTATGTACAGCCTGGTTATGC
AGCTTTAAAATTGACAGAGTATGGATATAATTGCTTTTATGACGATGGAA
GGCCGGTTTCTTCTATCCTTGGTTTATTGACACGATTTAATGATAGtaat
gatttatttttcaatgcTGGATCGGTCAAGAAAATTTTCTATCTGATAGT
TTCAAGGACTAAACTAAAAAATTATCCACAAGGATCAAGAAACTGTTGCT
GCAATTTAACGGCAGTAAAAGTAAAACAGCAAGGACCTGCTATTAATATG
AAAACTGGGACGTTCCTTATGTATGACTTTTGTTGTCCACCTATTGCCAA
CGATGGGTTTTTAGCTGATCTTACTTTTGGTATTAAAGCAAGCTGGCCAA
GTGTGAGCGACTGGAAAGAGCGCACCGGCCGTTTTTGGCCAAGTCCTGAA
GAAGTTGATAGAATTGTAGAAGGAGGGAGTCATTTTGTTGCCAAATCTCA
AACAGACGATAACATTGGAATAACTTGGAGATATTCTTTCTCAAAAGCTG
AAGTCGAACTCTCCAAATTGGTCAATCCAGTCGCAAGAAAATGTTATTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00016770-exon-sc0000248-1491911889:250711..252064 | TCONS_00016770-exon-sc0000248-1491911889:250711..252064 | Clytia hemisphaerica | exon |
| TCONS_00016770-exon-sc0000248-1510915933:250711..252064 | TCONS_00016770-exon-sc0000248-1510915933:250711..252064 | Clytia hemisphaerica | exon |
| TCONS_00016770-exon-sc0000248-1575043694:250711..252064 | TCONS_00016770-exon-sc0000248-1575043694:250711..252064 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000248 | supercontig | sc0000248:250711..252064 . |
Blast
The following BLAST results are available for this feature:
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