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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00016757 ID=TCONS_00016757|Name=TCONS_00016757|organism=Clytia hemisphaerica|type=transcript|length=3470bp
CTCCTCGTCTTTCATCTCGTCTCAAGTCGTGTGCATGAATGTCGACCAAA
GTCGACATCCCCACTCCATTGCCCTGATAACCATCAGTTCCCTGTACTTT
TTGGCGATGCCAAGCCGTTTGAATAAGTCGTCGTTCTTGGCGCACCAGAC
TCCACGTATAGAGATAATCAAGGCGGCATGCTTGATATCTTCTCGACCAG
TAAGATTGCGGACATAGTCATTGACAGGCTCAGAGTTGTAAATTTGAGCT
TTGTGGTCCCAGTTGCCATTCAAGGTGATCGTATTACCATGTATTCGCAT
TCTGCCGGTGACGATGGAAACGTCTATTATAGTAGCGGAGTCCGAGGACA
ACAATCAGATCAGGTTTATGAAGTTGTTGATTGTTTATACGGATGTGGTG
CTCGTATAAGACTCGAAGATTGGCGGCCTCGCAAGCAATTTGTAGAAGCT
TGGCGATAGAATCATGGCGCCGAATACGTAACGCGCGCGTCCTTGGACAT
CTGCTCAATATGTGGTTGACTGTCTCTTGGTATAGTTGGCAGTGTCTACA
GGCTTTGTCGTTAGCTCTACCTCGATTGCAGTTTTCGAGCGTTGGGAGTC
TGTTGATTCGAAGTTGGATTAGTCGGATGTAAGACTTCCCGGTGACGTGT
CTTGGCGCGTAGTTTAACCTGGTGCTACCGTTCGGGTTGGATAGACATTC
CCTTAGGTGGCTGCCGTCAATAGAGTCGTACAGGTTGCCAATACGTTGAT
TTTTGGTGTAATTCAGGGCATCCTCGACAGTGTGCTTGTTGATCATTGCT
AGCAGTTTCTGGCGCAGATCGTGTACGTAAGTCGAGTTGGCGAGGTCACG
TGTGGCTAAATCAGTTGAGTTTTCGAGATTTCGTAGACGTTTCAAGGTGT
AGCGTGGAATCGTCTCCTCGAATTTGCCGAAACCGAGTCCTCCTGTCGAG
ATTGGAGCGTGGAAGTACATCGTCGGAGTGTCGCTTGGGAGTCTTGTGAT
ATCCTTGATCGTCTTGCGTATTGCCAAGTCGAATGATTGTAGTAGACCCT
TCGTAACTCGTCCGAGGACGAGCTGATGGGTGAATTTAGGAATCACATTG
TCTCGCAACAGAGTTAATTTCTGTTGGGGTTTCANAGTCGGAGTGTCGCT
TGGGAGTCTTGTGATATCCTTGATCGTCTTGCGTATTGCCAAGTCGAATG
ATTGTAACAGACCCTTCGTAACTCGTCCGAGGACAAGCTGGTGGGTGAAT
TTAGGAATCACATTGTCTCGCAACAGAGTTAATTTCTGTTGGGGTTTCAG
GGGGGAGCCCTTAACCCTACCTAGCATTGATTCGAATTCGGTCAAGCTGG
GTTTCAACTTTCCCCTTGGGTCGTACTTAATCCCTAGGTACTTAAAGGGT
GAATCATAAGTATTAGATGGAATTGGTTTTCCGTTAATGGAATACGACCG
CTCGCGACTGACGACGATCACTCGGTCTTTCTTGGAAAGAAGGAACCGAA
AGGAGAAGCACTTTTTGGCATTGACTGACATAGACCGCTTCCGGAAGAAG
TCGGCCAAGATTTCAATGAGCCGGTTCATTCCTGCATGACTTTCAGCCAG
GAGAATGATGTCATCGGCGAAAGCGAGAGCGTTGGCAATTGAGTCTGAGA
TTTTCGCTCCTATCCACGGGGGGAGGAGGTCGAATAGCTCATCGAGGACA
AGGTTGAACAAGATGGGGGAGAGGGGATCTCCCTGCTTGACGCCCCGTAG
GAGACGGATTCGGTCAAGTTTCACTGGTCCGCATGAGATGTTCGTTGTGG
CGCCAGTGTATGTGTTGATGATATAGTCGATCATCTGTTCTTCTACCTTG
TGCCGTCGAAGTGCTCTGGTCAGACTATGGTGAGATACCGAGTCAAATGC
TTTACTCAGATCTATCCCGACAATGGATAAGGTAGAGCGACTCTTCCTGG
CTTTCTGAATTACTGAGTCAAGGATAAGAGTGTTTTGAGCAATACCATCC
ATGGGAAGGAAAGCCTTCTGTCTGGGATTGAGATGAAGCGCCTGAGTTAG
GCGTTTAGCGAGGATACGATGGAGAAGTCTCGCAATGACGCTACTAATCG
TAATCAGTCTCCAGTTGGAAGCGTCATAGAGTCCGTCCGGCTTTTTGGGA
ATCAGAGTAGTTCTATTCTTCTTCCACTGAACAGGTTGAGTTCCCGTGAC
GAGACAGTAGTTGAATATCATGCAGATCGAGCTCAGATTGGCAGCTTTTA
GGTCTTTGACTTTGAAGAAGTCAGGGCCTGCGGCCTTGTTGGGCATGTTT
TTCAACTCTCATTTGATCTCCTCAATGGTGATTGGGAGAAAAGTCGGATC
GCACGGATGAGGGGCTTCTCGATATTCGTGATTATCAGCAGGGCTCTCAG
ATTCGTAGATCCTCTGATACGTGTTACGAACACTTTCCGCAGTAAGAAAG
GTATCAGTTTCTTCGCAGGTGTCATTCAAGATGTTCGTAGTGAGTTGCTT
TCTACTACGTTTGAACATTTCTTGAAAACGGATGTAGCGCTTGAGACgta
tacgtcgtctatatggCCTCCTATCCGGGGCAGGATTAACAGGTGGTCTC
CTGCGTTGAGGGGCTTGTCTCACGAAATGTTCGTTGATGTATCTCTCGAG
TTCGGGCGTAACATCGGCTCCGTGGTCAATAAAGCGGGTTAAAATCTGGC
CCAGTTCGATATCATCCTCTGCAATCTCTCTGATCTGTCGGAAGAATGGG
TCTCGACTATCAGGAGGCGTATCAGGGAACCCGGCATCGGGACCCTGATC
TTCGTCGTCACTGCCACTAGCGACGGGATTATCGTCCCTCTCACGGACGA
TGATGTCATTTAGGATGTTTCGATACTTTGCCGATTTCCGCTGACCCTTG
ATGGATTCTAGGGAGCGTTGTGGGAACTTACCGATGAGATACTGGTTCAT
AAAGCGAGTTTCAGGTGGTGCGCTCGCTTCGGAGACAGCTAAAAGCTTTA
GTTCCTCGTCAGACCATCGGGCCTTGACGCGTTGAACGTCTTGTGCCGCC
TCATGTTGGATAGGGTGAGCGTGGCGCATATGCTGACCCAGACCTTGTCT
GGTTCTGAACGACTGGTCGCAAAGCGTACAAGCGAACTCGTGAACAACAA
CCTGAGCGTTTGCATTACCTTCGCATCTGACGAAGTGAGTAGACACGGAT
CTGATGGATGGTTTGTGGCACTGGCACCTTGAGCAGAGATAGGTGATAGG
AGCATTAGGATGACCCCTTTTAGTGTGCTTTAACCAAGACGCATGATCAG
CGAAGTTGAGTTCACAACATCGATTGCCAATTGGCGGCTTCGAATAGATA
TATTCGAAGTTAATTGTTCCGATATCCTGTAGGGTTATCCGGTCCGGTCC
AGGGTCTGCAACGTGTATGGGGTTACCGTTTATCtcatttaaattttcat
taggaacaATTGTTTTCGCT Run BLAST on NCBI protein sequence of TCONS_00016757-protein >TCONS_00016757-protein ID=TCONS_00016757-protein|Name=TCONS_00016757-protein|organism=Clytia hemisphaerica|type=polypeptide|length=670bp
MPNKAAGPDFFKVKDLKAANLSSICMIFNYCLVTGTQPVQWKKNRTTLIP
KKPDGLYDASNWRLITISSVIARLLHRILAKRLTQALHLNPRQKAFLPMD
GIAQNTLILDSVIQKARKSRSTLSIVGIDLSKAFDSVSHHSLTRALRRHK
VEEQMIDYIINTYTGATTNISCGPVKLDRIRLLRGVKQGDPLSPILFNLV
LDELFDLLPPWIGAKISDSIANALAFADDIILLAESHAGMNRLIEILADF
FRKRSMSVNAKKCFSFRFLLSKKDRVIVVSRERSYSINGKPIPSNTYDSP
FKYLGIKYDPRGKLKPSLTEFESMLGRVKGSPLKPQQKLTLLRDNVIPKF
THQLVLGRVTKGLLQSFDLAIRKTIKDITRLPSDTPTXKPQQKLTLLRDN
VIPKFTHQLVLGRVTKGLLQSFDLAIRKTIKDITRLPSDTPTMYFHAPIS
TGGLGFGKFEETIPRYTLKRLRNLENSTDLATRDLANSTYVHDLRQKLLA
MINKHTVEDALNYTKNQRIGNLYDSIDGSHLRECLSNPNGSTRLNYAPRH
VTGKSYIRLIQLRINRLPTLENCNRGRANDKACRHCQLYQETVNHILSRC
PRTRALRIRRHDSIAKLLQIACEAANLRVLYEHHIRINNQQLHKPDLIVV
LGLRYYNRRFHRHRQNANTW Run BLAST on NCBI transcript from alignment at sc0000248:16778..20247 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00016757 ID=TCONS_00016757|Name=TCONS_00016757|organism=Clytia hemisphaerica|type=transcript|length=3470bp|location=Sequence derived from alignment at sc0000248:16778..20247 (Clytia hemisphaerica)
AGCGAAAACAATtgttcctaatgaaaatttaaatgaGATAAACGGTAACC
CCATACACGTTGCAGACCCTGGACCGGACCGGATAACCCTACAGGATATC
GGAACAATTAACTTCGAATATATCTATTCGAAGCCGCCAATTGGCAATCG
ATGTTGTGAACTCAACTTCGCTGATCATGCGTCTTGGTTAAAGCACACTA
AAAGGGGTCATCCTAATGCTCCTATCACCTATCTCTGCTCAAGGTGCCAG
TGCCACAAACCATCCATCAGATCCGTGTCTACTCACTTCGTCAGATGCGA
AGGTAATGCAAACGCTCAGGTTGTTGTTCACGAGTTCGCTTGTACGCTTT
GCGACCAGTCGTTCAGAACCAGACAAGGTCTGGGTCAGCATATGCGCCAC
GCTCACCCTATCCAACATGAGGCGGCACAAGACGTTCAACGCGTCAAGGC
CCGATGGTCTGACGAGGAACTAAAGCTTTTAGCTGTCTCCGAAGCGAGCG
CACCACCTGAAACTCGCTTTATGAACCAGTATCTCATCGGTAAGTTCCCA
CAACGCTCCCTAGAATCCATCAAGGGTCAGCGGAAATCGGCAAAGTATCG
AAACATCCTAAATGACATCATCGTCCGTGAGAGGGACGATAATCCCGTCG
CTAGTGGCAGTGACGACGAAGATCAGGGTCCCGATGCCGGGTTCCCTGAT
ACGCCTCCTGATAGTCGAGACCCATTCTTCCGACAGATCAGAGAGATTGC
AGAGGATGATATCGAACTGGGCCAGATTTTAACCCGCTTTATTGACCACG
GAGCCGATGTTACGCCCGAACTCGAGAGATACATCAACGAACATTTCGTG
AGACAAGCCCCTCAACGCAGGAGACCACCTGTTAATCCTGCCCCGGATAG
GAGGccatatagacgacgtatacGTCTCAAGCGCTACATCCGTTTTCAAG
AAATGTTCAAACGTAGTAGAAAGCAACTCACTACGAACATCTTGAATGAC
ACCTGCGAAGAAACTGATACCTTTCTTACTGCGGAAAGTGTTCGTAACAC
GTATCAGAGGATCTACGAATCTGAGAGCCCTGCTGATAATCACGAATATC
GAGAAGCCCCTCATCCGTGCGATCCGACTTTTCTCCCAATCACCATTGAG
GAGATCAAATGAGAGTTGAAAAACATGCCCAACAAGGCCGCAGGCCCTGA
CTTCTTCAAAGTCAAAGACCTAAAAGCTGCCAATCTGAGCTCGATCTGCA
TGATATTCAACTACTGTCTCGTCACGGGAACTCAACCTGTTCAGTGGAAG
AAGAATAGAACTACTCTGATTCCCAAAAAGCCGGACGGACTCTATGACGC
TTCCAACTGGAGACTGATTACGATTAGTAGCGTCATTGCGAGACTTCTCC
ATCGTATCCTCGCTAAACGCCTAACTCAGGCGCTTCATCTCAATCCCAGA
CAGAAGGCTTTCCTTCCCATGGATGGTATTGCTCAAAACACTCTTATCCT
TGACTCAGTAATTCAGAAAGCCAGGAAGAGTCGCTCTACCTTATCCATTG
TCGGGATAGATCTGAGTAAAGCATTTGACTCGGTATCTCACCATAGTCTG
ACCAGAGCACTTCGACGGCACAAGGTAGAAGAACAGATGATCGACTATAT
CATCAACACATACACTGGCGCCACAACGAACATCTCATGCGGACCAGTGA
AACTTGACCGAATCCGTCTCCTACGGGGCGTCAAGCAGGGAGATCCCCTC
TCCCCCATCTTGTTCAACCTTGTCCTCGATGAGCTATTCGACCTCCTCCC
CCCGTGGATAGGAGCGAAAATCTCAGACTCAATTGCCAACGCTCTCGCTT
TCGCCGATGACATCATTCTCCTGGCTGAAAGTCATGCAGGAATGAACCGG
CTCATTGAAATCTTGGCCGACTTCTTCCGGAAGCGGTCTATGTCAGTCAA
TGCCAAAAAGTGCTTCTCCTTTCGGTTCCTTCTTTCCAAGAAAGACCGAG
TGATCGTCGTCAGTCGCGAGCGGTCGTATTCCATTAACGGAAAACCAATT
CCATCTAATACTTATGATTCACCCTTTAAGTACCTAGGGATTAAGTACGA
CCCAAGGGGAAAGTTGAAACCCAGCTTGACCGAATTCGAATCAATGCTAG
GTAGGGTTAAGGGCTCCCCCCTGAAACCCCAACAGAAATTAACTCTGTTG
CGAGACAATGTGATTCCTAAATTCACCCACCAGCTTGTCCTCGGACGAGT
TACGAAGGGTCTGTTACAATCATTCGACTTGGCAATACGCAAGACGATCA
AGGATATCACAAGACTCCCAAGCGACACTCCGACTNTGAAACCCCAACAG
AAATTAACTCTGTTGCGAGACAATGTGATTCCTAAATTCACCCATCAGCT
CGTCCTCGGACGAGTTACGAAGGGTCTACTACAATCATTCGACTTGGCAA
TACGCAAGACGATCAAGGATATCACAAGACTCCCAAGCGACACTCCGACG
ATGTACTTCCACGCTCCAATCTCGACAGGAGGACTCGGTTTCGGCAAATT
CGAGGAGACGATTCCACGCTACACCTTGAAACGTCTACGAAATCTCGAAA
ACTCAACTGATTTAGCCACACGTGACCTCGCCAACTCGACTTACGTACAC
GATCTGCGCCAGAAACTGCTAGCAATGATCAACAAGCACACTGTCGAGGA
TGCCCTGAATTACACCAAAAATCAACGTATTGGCAACCTGTACGACTCTA
TTGACGGCAGCCACCTAAGGGAATGTCTATCCAACCCGAACGGTAGCACC
AGGTTAAACTACGCGCCAAGACACGTCACCGGGAAGTCTTACATCCGACT
AATCCAACTTCGAATCAACAGACTCCCAACGCTCGAAAACTGCAATCGAG
GTAGAGCTAACGACAAAGCCTGTAGACACTGCCAACTATACCAAGAGACA
GTCAACCACATATTGAGCAGATGTCCAAGGACGCGCGCGTTACGTATTCG
GCGCCATGATTCTATCGCCAAGCTTCTACAAATTGCTTGCGAGGCCGCCA
ATCTTCGAGTCTTATACGAGCACCACATCCGTATAAACAATCAACAACTT
CATAAACCTGATCTGATTGTTGTCCTCGGACTCCGCTACTATAATAGACG
TTTCCATCGTCACCGGCAGAATGCGAATACATGGTAATACGATCACCTTG
AATGGCAACTGGGACCACAAAGCTCAAATTTACAACTCTGAGCCTGTCAA
TGACTATGTCCGCAATCTTACTGGTCGAGAAGATATCAAGCATGCCGCCT
TGATTATCTCTATACGTGGAGTCTGGTGCGCCAAGAACGACGACTTATTC
AAACGGCTTGGCATCGCCAAAAAGTACAGGGAACTGATGGTTATCAGGGC
AATGGAGTGGGGATGTCGACTTTGGTCGACATTCATGCACACGACTTGAG
ACGAGATGAAAGACGAGGAG Coding sequence (CDS) from alignment at sc0000248:16778..20247 >TCONS_00016757 ID=TCONS_00016757|Name=TCONS_00016757|organism=Clytia hemisphaerica|type=CDS|length=2013bp|location=Sequence derived from alignment at sc0000248:16778..20247 (Clytia hemisphaerica)
ATGCCCAACAAGGCCGCAGGCCCTGACTTCTTCAAAGTCAAAGACCTAAA
AGCTGCCAATCTGAGCTCGATCTGCATGATATTCAACTACTGTCTCGTCA
CGGGAACTCAACCTGTTCAGTGGAAGAAGAATAGAACTACTCTGATTCCC
AAAAAGCCGGACGGACTCTATGACGCTTCCAACTGGAGACTGATTACGAT
TAGTAGCGTCATTGCGAGACTTCTCCATCGTATCCTCGCTAAACGCCTAA
CTCAGGCGCTTCATCTCAATCCCAGACAGAAGGCTTTCCTTCCCATGGAT
GGTATTGCTCAAAACACTCTTATCCTTGACTCAGTAATTCAGAAAGCCAG
GAAGAGTCGCTCTACCTTATCCATTGTCGGGATAGATCTGAGTAAAGCAT
TTGACTCGGTATCTCACCATAGTCTGACCAGAGCACTTCGACGGCACAAG
GTAGAAGAACAGATGATCGACTATATCATCAACACATACACTGGCGCCAC
AACGAACATCTCATGCGGACCAGTGAAACTTGACCGAATCCGTCTCCTAC
GGGGCGTCAAGCAGGGAGATCCCCTCTCCCCCATCTTGTTCAACCTTGTC
CTCGATGAGCTATTCGACCTCCTCCCCCCGTGGATAGGAGCGAAAATCTC
AGACTCAATTGCCAACGCTCTCGCTTTCGCCGATGACATCATTCTCCTGG
CTGAAAGTCATGCAGGAATGAACCGGCTCATTGAAATCTTGGCCGACTTC
TTCCGGAAGCGGTCTATGTCAGTCAATGCCAAAAAGTGCTTCTCCTTTCG
GTTCCTTCTTTCCAAGAAAGACCGAGTGATCGTCGTCAGTCGCGAGCGGT
CGTATTCCATTAACGGAAAACCAATTCCATCTAATACTTATGATTCACCC
TTTAAGTACCTAGGGATTAAGTACGACCCAAGGGGAAAGTTGAAACCCAG
CTTGACCGAATTCGAATCAATGCTAGGTAGGGTTAAGGGCTCCCCCCTGA
AACCCCAACAGAAATTAACTCTGTTGCGAGACAATGTGATTCCTAAATTC
ACCCACCAGCTTGTCCTCGGACGAGTTACGAAGGGTCTGTTACAATCATT
CGACTTGGCAATACGCAAGACGATCAAGGATATCACAAGACTCCCAAGCG
ACACTCCGACTNTGAAACCCCAACAGAAATTAACTCTGTTGCGAGACAAT
GTGATTCCTAAATTCACCCATCAGCTCGTCCTCGGACGAGTTACGAAGGG
TCTACTACAATCATTCGACTTGGCAATACGCAAGACGATCAAGGATATCA
CAAGACTCCCAAGCGACACTCCGACGATGTACTTCCACGCTCCAATCTCG
ACAGGAGGACTCGGTTTCGGCAAATTCGAGGAGACGATTCCACGCTACAC
CTTGAAACGTCTACGAAATCTCGAAAACTCAACTGATTTAGCCACACGTG
ACCTCGCCAACTCGACTTACGTACACGATCTGCGCCAGAAACTGCTAGCA
ATGATCAACAAGCACACTGTCGAGGATGCCCTGAATTACACCAAAAATCA
ACGTATTGGCAACCTGTACGACTCTATTGACGGCAGCCACCTAAGGGAAT
GTCTATCCAACCCGAACGGTAGCACCAGGTTAAACTACGCGCCAAGACAC
GTCACCGGGAAGTCTTACATCCGACTAATCCAACTTCGAATCAACAGACT
CCCAACGCTCGAAAACTGCAATCGAGGTAGAGCTAACGACAAAGCCTGTA
GACACTGCCAACTATACCAAGAGACAGTCAACCACATATTGAGCAGATGT
CCAAGGACGCGCGCGTTACGTATTCGGCGCCATGATTCTATCGCCAAGCT
TCTACAAATTGCTTGCGAGGCCGCCAATCTTCGAGTCTTATACGAGCACC
ACATCCGTATAAACAATCAACAACTTCATAAACCTGATCTGATTGTTGTC
CTCGGACTCCGCTACTATAATAGACGTTTCCATCGTCACCGGCAGAATGC
GAATACATGGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00016757-exon-sc0000248-1491911889:16778..20247 | TCONS_00016757-exon-sc0000248-1491911889:16778..20247 | Clytia hemisphaerica | exon |
| TCONS_00016757-exon-sc0000248-1510915933:16778..20247 | TCONS_00016757-exon-sc0000248-1510915933:16778..20247 | Clytia hemisphaerica | exon |
| TCONS_00016757-exon-sc0000248-1575043694:16778..20247 | TCONS_00016757-exon-sc0000248-1575043694:16778..20247 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| sc0000248 | supercontig | sc0000248:16778..20247 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
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| IPR000477 | RT_dom |
Blast
The following BLAST results are available for this feature:
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