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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00016756 ID=TCONS_00016756|Name=TCONS_00016756|organism=Clytia hemisphaerica|type=transcript|length=955bp
TGGGGTGAGTTGTTTGATTTCTTGTCATTTGGGACAAGATTATTTAGAGT
TTTCCAAAGTTTCTTGGAATTTGACTTGTTTTCATCAAGCACGCGTTGAT
AGTGTCCCTTTTTAAGTCGATTATTCAAACTAACGACATAGTTTCTCTGT
TTTTTGAATCTGTTCCAATCAATAACAGTTTTCGTCCTGGATGcaatttt
tttcagataatCCCTTCTTTTTATTGCATCTAGAAGGTCTTCTGTAACCC
AGTGAGGGCTGGAATCGCGCAACCTCTTTTTGGTTAAAGGAGCGTGACGA
TTTAATATCCCGAGGATATTTTCATTGAACTGGGACACAGCAGTATCAAC
ATTGTTTGTATGGATTACTTTCGACCAATCAAGGTTTCCTAGATCATCTA
GAAATGCCTCTtggttgaaatttttgaaagatctgGAAGTGAGAAACCtt
ggtgatttttgaattttaattttcgaCCTTTTGATACAAACAAGTGAGTG
GTCACTTAAACCCATGTCAATGACTTGGCACTCAGTTGCCTCTTTACTAT
TTGACAGAATCAGATCAATCAAAGTAGatgaagtttgagtcacccTTGTC
GGTGATTCGACATGCTGAACTAACGATTTATCTTTACATAGATCGTGGAC
GGCAGAAGAGAGATGGTTTCTCCGCAGCATGTCACAGTTAAAATCTCCTA
GTATAAAAACTTCCGAGTTCTTTGGGATTTTCTTTGGGAGTCCGTCCGGC
TTTTTGGGAATCAGAGTAGTTCTATTCTTCTTCCACTGAACGGGTTGAGT
TCCCGTGACGAGACAGTAGTTGAATATCATGCAGATCGAGCTCAGATTGG
CAGCTTTTAGGTCTTTGACTTTGAAGAAGTCAGGGCTTGCGGCCTTGTTG
GGCATGTTTTTCAACTCTCGTTTGATCTCCTCAATGGTGATTGGGAGAAA
AGTCG Run BLAST on NCBI protein sequence of TCONS_00016756-protein >TCONS_00016756-protein ID=TCONS_00016756-protein|Name=TCONS_00016756-protein|organism=Clytia hemisphaerica|type=polypeptide|length=317bp
TFLPITIEEIKRELKNMPNKAASPDFFKVKDLKAANLSSICMIFNYCLVT
GTQPVQWKKNRTTLIPKKPDGLPKKIPKNSEVFILGDFNCDMLRRNHLSS
AVHDLCKDKSLVQHVESPTRVTQTSSTLIDLILSNSKEATECQVIDMGLS
DHSLVCIKRSKIKIQKSPRFLTSRSFKNFNQEAFLDDLGNLDWSKVIHTN
NVDTAVSQFNENILGILNRHAPLTKKRLRDSSPHWVTEDLLDAIKRRDYL
KKIASRTKTVIDWNRFKKQRNYVVSLNNRLKKGHYQRVLDENKSNSKKLW
KTLNNLVPNDKKSNNSP Run BLAST on NCBI transcript from alignment at sc0000248:15508..16462 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00016756 ID=TCONS_00016756|Name=TCONS_00016756|organism=Clytia hemisphaerica|type=transcript|length=955bp|location=Sequence derived from alignment at sc0000248:15508..16462 (Clytia hemisphaerica)
CGACTTTTCTCCCAATCACCATTGAGGAGATCAAACGAGAGTTGAAAAAC
ATGCCCAACAAGGCCGCAAGCCCTGACTTCTTCAAAGTCAAAGACCTAAA
AGCTGCCAATCTGAGCTCGATCTGCATGATATTCAACTACTGTCTCGTCA
CGGGAACTCAACCCGTTCAGTGGAAGAAGAATAGAACTACTCTGATTCCC
AAAAAGCCGGACGGACTCCCAAAGAAAATCCCAAAGAACTCGGAAGTTTT
TATACTAGGAGATTTTAACTGTGACATGCTGCGGAGAAACCATCTCTCTT
CTGCCGTCCACGATCTATGTAAAGATAAATCGTTAGTTCAGCATGTCGAA
TCACCGACAAgggtgactcaaacttcatCTACTTTGATTGATCTGATTCT
GTCAAATAGTAAAGAGGCAACTGAGTGCCAAGTCATTGACATGGGTTTAA
GTGACCACTCACTTGTTTGTATCAAAAGGtcgaaaattaaaattcaaaaa
tcaccaaGGTTTCTCACTTCcagatctttcaaaaatttcaaccaAGAGGC
ATTTCTAGATGATCTAGGAAACCTTGATTGGTCGAAAGTAATCCATACAA
ACAATGTTGATACTGCTGTGTCCCAGTTCAATGAAAATATCCTCGGGATA
TTAAATCGTCACGCTCCTTTAACCAAAAAGAGGTTGCGCGATTCCAGCCC
TCACTGGGTTACAGAAGACCTTCTAGATGCAATAAAAAGAAGGGattatc
tgaaaaaaattgCATCCAGGACGAAAACTGTTATTGATTGGAACAGATTC
AAAAAACAGAGAAACTATGTCGTTAGTTTGAATAATCGACTTAAAAAGGG
ACACTATCAACGCGTGCTTGATGAAAACAAGTCAAATTCCAAGAAACTTT
GGAAAACTCTAAATAATCTTGTCCCAAATGACAAGAAATCAAACAACTCA
CCCCA Coding sequence (CDS) from alignment at sc0000248:15508..16462 >TCONS_00016756 ID=TCONS_00016756|Name=TCONS_00016756|organism=Clytia hemisphaerica|type=CDS|length=951bp|location=Sequence derived from alignment at sc0000248:15508..16462 (Clytia hemisphaerica)
ACTTTTCTCCCAATCACCATTGAGGAGATCAAACGAGAGTTGAAAAACAT
GCCCAACAAGGCCGCAAGCCCTGACTTCTTCAAAGTCAAAGACCTAAAAG
CTGCCAATCTGAGCTCGATCTGCATGATATTCAACTACTGTCTCGTCACG
GGAACTCAACCCGTTCAGTGGAAGAAGAATAGAACTACTCTGATTCCCAA
AAAGCCGGACGGACTCCCAAAGAAAATCCCAAAGAACTCGGAAGTTTTTA
TACTAGGAGATTTTAACTGTGACATGCTGCGGAGAAACCATCTCTCTTCT
GCCGTCCACGATCTATGTAAAGATAAATCGTTAGTTCAGCATGTCGAATC
ACCGACAAgggtgactcaaacttcatCTACTTTGATTGATCTGATTCTGT
CAAATAGTAAAGAGGCAACTGAGTGCCAAGTCATTGACATGGGTTTAAGT
GACCACTCACTTGTTTGTATCAAAAGGtcgaaaattaaaattcaaaaatc
accaaGGTTTCTCACTTCcagatctttcaaaaatttcaaccaAGAGGCAT
TTCTAGATGATCTAGGAAACCTTGATTGGTCGAAAGTAATCCATACAAAC
AATGTTGATACTGCTGTGTCCCAGTTCAATGAAAATATCCTCGGGATATT
AAATCGTCACGCTCCTTTAACCAAAAAGAGGTTGCGCGATTCCAGCCCTC
ACTGGGTTACAGAAGACCTTCTAGATGCAATAAAAAGAAGGGattatctg
aaaaaaattgCATCCAGGACGAAAACTGTTATTGATTGGAACAGATTCAA
AAAACAGAGAAACTATGTCGTTAGTTTGAATAATCGACTTAAAAAGGGAC
ACTATCAACGCGTGCTTGATGAAAACAAGTCAAATTCCAAGAAACTTTGG
AAAACTCTAAATAATCTTGTCCCAAATGACAAGAAATCAAACAACTCACC
C
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00016756-exon-sc0000248-1491911889:15508..16462 | TCONS_00016756-exon-sc0000248-1491911889:15508..16462 | Clytia hemisphaerica | exon |
| TCONS_00016756-exon-sc0000248-1510915933:15508..16462 | TCONS_00016756-exon-sc0000248-1510915933:15508..16462 | Clytia hemisphaerica | exon |
| TCONS_00016756-exon-sc0000248-1575043694:15508..16462 | TCONS_00016756-exon-sc0000248-1575043694:15508..16462 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000248 | supercontig | sc0000248:15508..16462 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR005135 | Endo/exonuclease/phosphatase |
Blast
The following BLAST results are available for this feature:
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