TCONS_00016671 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00016671
Unique Name	TCONS_00016671
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1037

Sequence

The following sequences are available for this feature:

transcript sequence
protein sequence
transcript from alignment at sc0000246:64261..73022-
coding sequence from alignment at sc0000246:64261..73022-

transcript sequence

>TCONS_00016671 ID=TCONS_00016671|Name=TCONS_00016671|organism=Clytia hemisphaerica|type=transcript|length=1037bp
AAAAATGAACGCCTCTGACGTCAGAGATGAAGCGAGGTTGTTTTCAGATG
TGCTGTTTGTCATGGGCAGAGCAAAGATGATATTTAACATTGATAcaatt
cagtttcaaagaagACACTGAACAGCTTGGTCCCAGGATAGTTTTGATAG
TCAAATTTTAAAGaaaatctATATCAGCAACAAAGTATTCTTGCTTAAAA
ATGGTTGTTGCATGGAAACATGAGCAGAGTGCTGAACCTCCAACGAGTCC
TCACAAGAAAAAACCTGATGAACCAGTCAACTTGAAGAGTTTGGAGAAAT
TTGGAATATTCTGTAAGAGACTCGATGCTGAAACTATTGCTTGCAAAGAT
GACCCAAAATTATTGGCATTTTGCAAAGATAACGATTACACTTCCTCAGA
TGTTTTAACTGTAAGCAAAGATGCATTGAAGAATTACGAAGAAACCTTGA
AATGCTTTTTTCATGAACATTTTCATCCTGATGATGAATCACGTTATGTT
TTAGATGGTGCCGGATATTTTGATGTGAGAAATGAAAATGATGAATGGAT
ACGTGTTCGAATCGAAAAGGGTGATCTTATAACCCTTCCAGCTGGAATGT
ATCATAGATTTGCCCTTGACGATCAACAAAGCTACTTGAAATCTGTTAGA
ATGTTTGTTTCAGAAGCTGTATGGACACCTTTGTATCGACCCAACGAGGA
ACATTTTATTCGAAAAgagtatttgaaaaaatataacattGATTTACCAA
CACTATGAAATGAATactttcaatattcaaaatgcACTATACTCACCACA
TCATGCACTTAGCAAGAGACTTAATTTGTACATATTGACAtctcatttta
aatgaatttattttacTTAGACATTAAAACCACATTCAAGATATTTTGAC
GCCTGGTCAGACATCAGATTTCTCTCCTTAGAATATctgttttgttattt
tgattttattattttatgaataaaaactatgtaaaaaattattttgtcca
gaaagaaattttattgatgTTTATTCTTAAAATTCAA

Run BLAST on NCBI

protein sequence of TCONS_00016671-protein

>TCONS_00016671-protein ID=TCONS_00016671-protein|Name=TCONS_00016671-protein|organism=Clytia hemisphaerica|type=polypeptide|length=185bp
MVVAWKHEQSAEPPTSPHKKKPDEPVNLKSLEKFGIFCKRLDAETIACKD
DPKLLAFCKDNDYTSSDVLTVSKDALKNYEETLKCFFHEHFHPDDESRYV
LDGAGYFDVRNENDEWIRVRIEKGDLITLPAGMYHRFALDDQQSYLKSVR
MFVSEAVWTPLYRPNEEHFIRKEYLKKYNIDLPTL

Run BLAST on NCBI

transcript from alignment at sc0000246:64261..73022-

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00016671 ID=TCONS_00016671|Name=TCONS_00016671|organism=Clytia hemisphaerica|type=transcript|length=8762bp|location=Sequence derived from alignment at sc0000246:64261..73022- (Clytia hemisphaerica)
AAAAATGAACGCCTCTGACGTCAGAGATGAAGCGAGGTTGTTTTCAGATG
TGCTGTTTGTCATGGGCAGAGCAAAGATGATATTTAACATTGGTATTACC
TCAAAAACTAGTTACTTTAAAATCAAATAATCATGAAAATGTATTTGCAA
ATTTGATCAATACAAAGTTTTAAATTGTTTCAAACTCTCATTTATTTTAA
AAACTGGCTACACGACCTTACACGAAATCAACATTGTATATCTACTTTGC
TGTTTTTCTTTTTTTTTTTCATTTTGTAAACATTGCGGGAAAGCTGCAAG
ACCGCACGCTTCCTGAACTTTCGTGGACTTTTTCACGTGAACTTTTTCAT
TGTTTTTCTACAACTTTGAACCCATTTAAAGCCATGGTTTTGTTTAGATA
CAATTCAGTTTCAAAGAAGACACTGAACAGCTTGGTCCCAGGATAGTTTT
GATAGTCAAATTTTAAAGGTAAGACGTATTTTACATGCATTTTTTTACCA
TACTGTACTGAAAATAGTCATAATTGGCGTCTCCACCCTAAACCAAAGAA
TTTTGACAAGTACTAAAATATTATGGCATGTACTAAAAGACGGATCGACG
GATCGTTGGATCAACGGATCGACGGATTACTAAAAGACGGATCGTCGTAT
TTCGGATTACTATCAACATAAAAGGGCTTGCAGAACGACCGTTCCGTTTT
CGCAAAGCGAAGAAATTTCGACACTAACAAATTATTTTTATAAGTCAAAC
TTTTATTGATGATGTTTTCCAACTCAACTCTTTCTTTTTTATTTGTTTTT
TGTTTTTGTTTTTTTATCTTTTTTGAGATTATAGAAGAAGAATAAACTAT
GTACATAAGGTTTAACCATGGGTGGTTTTCGAGCTATGTACACTTCTATA
CGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNCAAAAAGATGTTCCCAATGTTTCATT
TATAAAATCAATCCAAACCAGTCCAAACTAATTTTTTCAAGAACCTTGCC
TTGCAGAATAAAATTCAAAAACTTTTATAATTCATATAAGTATATTAAAG
TAATGCCATTACTATTTATTTTATTAGGCGGTAATAATAACAAGCGTTAT
CTACAATCTTACGTCAAAGAGTTTAGGAAAATATAAGTTGATTCACCAGT
AAAAAAAAAAAATTGCTGAAAGATATCTTGTTTGAAAATATATTCGAGCT
AGCATCAAAAGTAACATATAGGTACTTTTATCATTTAAAGTTGTCTTTTG
GGCTAAAGTCATCAATCATGCTTTTGTTATCACTTTATCGTACAAATATA
AATCGGCATTATTCTAATTGATGATGATCAAGGTCAAGCTCCAATGTTAA
ACAAAAATCTCTCAAGAGTCAGCAAGCGATAATGGAATCAACAATCAATC
AAGCCAAATCAAAATGATTCCATTATCGAATAAATATTGAAGAAATCTTC
AATGACGAAAATAGCAACTAGTAATTATCATTTTGATTCTGCTTTCCAGT
ACAGTTTTCTCTTTTGTCTCGTAAACATTATTGCACAGAATACATGGAAC
TGGCACAATTTATATTCAGCAGAGGATGGACCATTTTATTATTCTCCATC
AATCACAATCTGTTCATACAGTCATAATGCTTTGTATATTTTGGTTTTAT
GCTGCTTCTTTGTTGTGCACGTTCCCCCACCAAAACTCTGAAACACTGAT
CGGTCGATCGGTAGCTAAAAGTCACCCATCACATCAATCAAGCTCCTTCA
CACCTGAACCCTGAAGACGGAAGAGATAAAAATAATTATAGTTAGAGTAA
AATGAAATAAACACGACCTATATGAATAAAAATAAGCCTGTGGAAAGAAA
ACATGGCCATATGATATCCATGAAACACATGGTCGAGAAAAAAACATTTT
GTTTTGTGAGATGAAATCTAATTTAATACAAAAAAGTCAACACAAAGAAA
AAGTACTAATGTAACATTCCAAAGGTAGTTGAAACTGTAAAGGTGAAAAA
AAAGAAGATTTACCTTTCAATGGGCCATAATCAGTCCAAAAGTTAGTGCA
TGCACCTCATCAAAAACCAAAGAGATTCGTTGGTTTTCAGGGCCATCTTT
GTTGTTTTGAAAATGAAACGCAGAAAAAAAGACTGGGCCCAGACATCCTG
GAAGAAGCGGGAAAAAAGCAAAGGAGATAAAGTTTTGGTACTATTACTAT
TATTTGTACAAAAGTGGCAATTTTCATAAAAGATCTTACTTTATAATACT
TTTGATATCAATCATATTCTATTGCAATAAATATTTTTACAAAAAAGATA
CTTTTAATAGTGCTACAGAAAATTGATCCCATCCAACACGAAGCAAAGTC
GATATGTCACCCTACGATTTTTTTTGAAATTTTCGTACATATAACATANN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNATAACATATACAAATTTTTTACGCCACACGCCCAGATCTA
GAGAAAGGATGCTACACTCCCTATTCGGGCGCTTCGCGCCCTCAAAACGG
TCGTTCCGCAAAAAGACGGATCATCGTATTTCGGATTACTAATAAATAGA
CGGATCGTCGTATTTCAGATTACTATTACGTCGTATTTTTTAAATAGAAA
GCTATAGTCTGAAATAGTGTGCAATATCATTTGAATTAATCAGGAGGACC
CACCATGGTATGGTCCGACTAGGAAAATCTTAGAAAATATAACTTCTTAG
ACTAGCTAAGGGGTCAGTCACAAATCGATTCTAGGTTAGAAGAACGTCAA
TTGACGTTTTAAAAGCCGACCCACCCACCCACACCCAAAAACGTCAAACA
CCTTGATATCCCCAAAAATCGATAAAAACTGCCTTCATTGCTGTTTTGTC
AGCCATCTTGATTTTCACTAAGGCTCGCATAATTTATATTTGAAAAAAAA
AAAGAAACAGAGATAATTTCTAAACTTGTTCACAAAATTCCCGTAATTAA
TTATCTCCGTAGTATGTAGCGACAGAAAGAACATTGAGTTTCAAGCCCGA
AGGGCTAGAGGTCAATCTCTTTGGTAGGATTTGATGCCAACAAATCCTAC
TAAAGTTGCGCGGCCTTGAGCGACCCGCCTGGTTTTTACACAAATAACAG
ATTGAAACTAAAATTTACCGCTTAATTTTGAAAAATATATCACTCAAAAA
CAAAGGAATTGCTAGATTCAATCCGTCATCAAAAATACAGCGCATATTTA
AAGGCTTCAATTTTTCTTGCCTGAGAAAGGTTAGAGATTGACCTCTAGCC
CTTCGGGCTTGAAACTCAATGAGAAAGAACGGCCATCTGCAAAAATTTAA
GGGCCGTTCGGGCCGTCAAACAAAGAAAAGACATAAACATCGGGCCGTTT
GTTTTGGTTTTCAAAACAAACGAAGCGATCAAACAAAAACATGGCGAGAA
GTAATATTTGGCATAGAATGAAAAATCGATGTTTCTGAAAAACGTCAACA
ACCTTTAACCCACCCACCCATATACGTCAATTGACGTTCTTCTAACTTAA
AATCGATTTGTGACTGACCTTTAAAACCCTTCTAAATTGACTCTAATTTT
ACTCATAAAATTTCAGACCACAAACTCAAATAGAATCCTCCACTTCACCC
TTCCTAGTTTATACTTTATGACTACTCCCTTTTATATTTATTGGCTGAAA
TTTTAAGTTGAGCAGGAACGAATTGATGTGTAAAATTAATACTTTACCGT
GTAGAGAGGCCCCCAGCTGTACTAATAGTGTAAGCAGTAGGTATAATATA
AAAAATGACTGGTTTTTTTCCTGACCTTAATAAAATTTCCTGATTTTCTG
TTGAATAATGCAATATTTATTTTGAAAGTTGAGTATATAATTAATAAACA
TCCTTGCCTTTTCTGGACTATATCTATCATGGAGCTTTCTATATATTTAA
CTAACATTGACCCAAGGGCCCATTCTTGCTACATTAGATTAAAAATTCAG
CAGACGTAGCAAACGATGAAAATAATTAGGTAATTAGTGTATGCCTTACA
TATTTTCCTCAACAATCAACAATTTCACACTACATACCAGTCACTGCAAC
TATTTTCAAGAATTTTAAGAAGAAGGAGGAAGAAGGAGGAAGCTATCACA
CAAGGAATTCCTTCCACACGAGTAATCCGAAATACGACGATCCGTGTTTT
AGTAATCCGAAATACGACGATCCGTGTTTTAGTAATCCGAAATACGACGA
TCCATCTTTTAGTAATCTGAAATACGACAATCCATCTTTTAGTAATCCGA
AATACGATGATCCGTGTTTTAGTAATCCGAAATACGACGATCCGTGTTTT
AGTAATCCGGAATACAACGATCCGTCTTTTAGTAATCCGAAAATACGACG
ATCCGTCTTTTAGTAATCCGTCGATCCGTCTTTTAGTATATGCCAAATAT
TATTGGATTTCATTCTTCACGCTCATAGATATCTTAGAAAAGTATTACTG
TGAAGTCAGATAACTTGCATCAGTGGAGGGAAACTTGTATAGTCCTCTAA
TGCATGACCTAGCTGGTCATTTAAAATACAAAGTTGAATCAAAACAAACC
TGATTTACAAAATTTGCGGGTTGTAAAATGTATATCTCATGGCTCNNNNN
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NNNNNNNNNNNNNNTTTTATCAGGCTGGGGGGACCTTGTTCTTAGGGGGG
ACCTAAATTTAGCGGGGGGACCTAGAACCCCAGTCGGAGCCATGTATCTC
CATTTTGATGGCTATGCATATTTCCCTCCACTGCAGGTTATTCTCAGTAG
TTTTTTCTTGCGCCCTCTTCTCAAACTTAAAACATTGATAATCTGGACAA
TCATTTTTGAAGCCCTGCCTTTTTTTATTTTTCTTCAGAAAATCTATATC
AGCAACAAAGTATTCTTGCTTAAAAATGGTTGTTGCATGGAAACATGAGC
AGAGTGCTGAACCTCCAACGAGTCCTCACAAGAAAAAACCTGATGAACCA
GTCAACTTGAAGAGTTTGGAGAAATTTGGAATATTCTGTAAGAGACTCGA
TGCTGAAACTATTGCTTGCAAAGATGACCCAAAATTATTGGCATTTTGCA
AAGATAACGATTACACTTCCTCAGATGTTTTAACTGTAAGCAAAGATGCA
TTGAAGAATTACGAAGAAACCTTGAAATGCTTTTTTCATGAACATTTTCA
TCCTGATGATGAATCACGTTATGTTTTAGATGGTGCCGGATATTTTGATG
TGAGAAATGAAAATGATGAATGGATACGTGTTCGAATCGAAAAGGGTGAT
CTTATAACCCTTCCAGCTGGAATGTATCATAGATTTGCCCTTGACGATCA
ACAAAGCTACTTGAAATCTGTTAGAATGTTTGTTTCAGAAGCTGTATGGA
CACCTTTGTATCGACCCAACGAGGAACATTTTATTCGAAAAGAGTATTTG
AAAAAATATAACATTGATTTACCAACACTATGAAATGAATACTTTCAATA
TTCAAAATGCACTATACTCACCACATCATGCACTTAGCAAGAGACTTAAT
TTGTACATATTGACATCTCATTTTAAATGAATTTATTTTACTTAGACATT
AAAACCACATTCAAGATATTTTGACGCCTGGTCAGACATCAGATTTCTCT
CCTTAGAATATCTGTTTTGTTATTTTGATTTTATTATTTTATGAATAAAA
ACTATGTAAAAAATTATTTTGTCCAGAAAGAAATTTTATTGATGTTTATT
CTTAAAATTCAA

Coding sequence (CDS) from alignment at sc0000246:64261..73022-

>TCONS_00016671 ID=TCONS_00016671|Name=TCONS_00016671|organism=Clytia hemisphaerica|type=CDS|length=558bp|location=Sequence derived from alignment at sc0000246:64261..73022- (Clytia hemisphaerica)
ATGGTTGTTGCATGGAAACATGAGCAGAGTGCTGAACCTCCAACGAGTCC
TCACAAGAAAAAACCTGATGAACCAGTCAACTTGAAGAGTTTGGAGAAAT
TTGGAATATTCTGTAAGAGACTCGATGCTGAAACTATTGCTTGCAAAGAT
GACCCAAAATTATTGGCATTTTGCAAAGATAACGATTACACTTCCTCAGA
TGTTTTAACTGTAAGCAAAGATGCATTGAAGAATTACGAAGAAACCTTGA
AATGCTTTTTTCATGAACATTTTCATCCTGATGATGAATCACGTTATGTT
TTAGATGGTGCCGGATATTTTGATGTGAGAAATGAAAATGATGAATGGAT
ACGTGTTCGAATCGAAAAGGGTGATCTTATAACCCTTCCAGCTGGAATGT
ATCATAGATTTGCCCTTGACGATCAACAAAGCTACTTGAAATCTGTTAGA
ATGTTTGTTTCAGAAGCTGTATGGACACCTTTGTATCGACCCAACGAGGA
ACATTTTATTCGAAAAGAGTATTTGAAAAAATATAACATTGATTTACCAA
CACTATGA

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_009319	XLOC_009319	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00016671-exon-sc0000246-1575043694:72931..73022	TCONS_00016671-exon-sc0000246-1575043694:72931..73022	Clytia hemisphaerica	exon
TCONS_00016671-exon-sc0000246-1575043694:72555..72625	TCONS_00016671-exon-sc0000246-1575043694:72555..72625	Clytia hemisphaerica	exon
TCONS_00016671-exon-sc0000246-1575043694:64261..65134	TCONS_00016671-exon-sc0000246-1575043694:64261..65134	Clytia hemisphaerica	exon
TCONS_00016671-exon-sc0000246-1510915933:72931..73022	TCONS_00016671-exon-sc0000246-1510915933:72931..73022	Clytia hemisphaerica	exon
TCONS_00016671-exon-sc0000246-1510915933:72555..72625	TCONS_00016671-exon-sc0000246-1510915933:72555..72625	Clytia hemisphaerica	exon
TCONS_00016671-exon-sc0000246-1510915933:64261..65134	TCONS_00016671-exon-sc0000246-1510915933:64261..65134	Clytia hemisphaerica	exon
TCONS_00016671-exon-sc0000246-1491911889:72931..73022	TCONS_00016671-exon-sc0000246-1491911889:72931..73022	Clytia hemisphaerica	exon
TCONS_00016671-exon-sc0000246-1491911889:72555..72625	TCONS_00016671-exon-sc0000246-1491911889:72555..72625	Clytia hemisphaerica	exon
TCONS_00016671-exon-sc0000246-1491911889:64261..65134	TCONS_00016671-exon-sc0000246-1491911889:64261..65134	Clytia hemisphaerica	exon

The following polypeptide feature(s) derives from this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00016671-protein	TCONS_00016671-protein	Clytia hemisphaerica	polypeptide

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000246	supercontig	sc0000246:64261..73022 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
44.9042	40.9474	77.283	86.7633	23.5174	16.0724	20.1619	21.5571	34.8069	24.5982	36.291	36.669	14.5617	17.1645	34.9139	33.9953	12.0942	12.2973	8.79074	9.34186	16.1567	14.064	64.1613	49.4437	9.61473	12.8508	8.46035	8.08858	36.5241	39.8772

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **INTERPRO**
Term	Definition
IPR004313	ARD
IPR014710	RmlC-like_jellyroll
IPR027496	ARD_euk
IPR011051	RmlC_Cupin

Vocabulary: **Biological Process**
Term	Definition
GO:0055114	oxidation-reduction process
GO:0019509	L-methionine salvage from methylthioadenosine

Vocabulary: **Molecular Function**
Term	Definition
GO:0010309	acireductone dioxygenase [iron(II)-requiring] activity
GO:0016491	oxidoreductase activity

GO Annotation

GO Assignments

This transcript is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0019509	L-methionine salvage from methylthioadenosine
biological_process	GO:0055114	oxidation-reduction process
molecular_function	GO:0010309	acireductone dioxygenase [iron(II)-requiring] activity
molecular_function	GO:0016491	oxidoreductase activity

Blast

[Close]

BLAST of TCONS_00016671 vs. Swiss-Prot (Human)
Match: MTND (1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase OS=Homo sapiens GN=ADI1 PE=1 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 2.811e-52
Identity = 80/176 (45.45%), Postives = 120/176 (68.18%), Query Frame = 3

Query:  201 MVVAWKHEQSAEPPTSPHKKKPDEPVNLKSLEKFGIFCKRLDAETIACKDDPKLLAFCKDNDYTSSDVLTVSKDALKNYEETLKCFFHEHFHPDDESRYVLDGAGYFDVRNENDEWIRVRIEKGDLITLPAGMYHRFALDDQQSYLKSVRMFVSEAVWTPLYRPNEEHFIRKEYLK 728
            MV AW  + +   P  PH+  P  PV L+ L + G+   +LDA+    ++DP+L    ++ +Y+  D++T+ KD L NYEE +K F+ EH H DDE RY+LDG+GYFDVR++ D+WIR+ +EKGD++TLPAG+YHRF + D+++Y K++R+FV E VWT   RP +    R +Y+K
Sbjct:    1 MVQAWYMDDAPGDPRQPHRPDPGRPVGLEQLRRLGVLYWKLDADK--YENDPELEKIRRERNYSWMDIITICKDKLPNYEEKIKMFYEEHLHLDDEIRYILDGSGYFDVRDKEDQWIRIFMEKGDMVTLPAGIYHRFTV-DEKNYTKAMRLFVGEPVWTAYNRPADHFEARGQYVK 173

The following BLAST results are available for this feature:

BLAST of TCONS_00016671 vs. Swiss-Prot (Human)

BLAST of TCONS_00016671 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
MTND	2.811e-52	45.45	1,2-dihydroxy-3-keto-5-methylthiopentene dioxygena...	[more]

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TCONS_00016671 (transcript) - C. hemisphaerica