|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00016670 ID=TCONS_00016670|Name=TCONS_00016670|organism=Clytia hemisphaerica|type=transcript|length=2380bp TTAAAATGTGCTCAAAACCATTCACCATTCAGATCTTTCAGTTGTGTATA AAACGAGGAGATGTTCAGTTGATAAATTCATACTTAGCTTTGACTAGCAG ACAAGAAACAGTCAAAATTATTCTAAAGACAAAAGTTATCATCTATAGTT TGGCGTTTTTATTGGAACGAATTActtTGTTAGTATATCGGTTGAATATT GCAACAATAACGAACGGTTGTGTAACGATTCAAGATGGCTGAATTACCAG ATCACGTGACAGTTACCCATGGTTCATGGAATGACCTTCCACgaaaagtg aaagagttcactTTATCTAAGATCAAACTCAGCAAACCTGACAGACTTCA TATTATTGATGGTTCAGTCGACGAAGAACATAAACTGGAAGCGAAACTTT GTGAAAAAGGAACAGCAATTCGATTGTCTGGCATGGATAATTGCTATGTT GTACGAACAAATCCTGCAGACGTAGCACGCGTGGAGAGCAAAACGTTGAT TTGCAGTAAGAACAAACACGATACCATCCCTCATCACAAGGAGGGCGTCA ACTGCCGCCTTGGTCAATGGCGGCACCCTGACGAAATGGATGAACATctc aacaaactttttgatgGATGCATGAAAGGTCGAACCATGTACCTGATTCC ATTCTCAATGGGACCTGTTGGATCACCTTTATCCAAGATTGGAATCCAAC TAACCGATTCACCATACGTTGCAATGTGCATGAAAATCATGACCAGAATG GGGTCTGCCATTCTCGCTCAACTTAAGGACGAAGATGAATTCGTACGAGC GACCCATTCGGTTGGTCAACCTTTACCATTGGTTGAACCAGATCCTTACC ACTGGCCTTGCAATCCAGAGAAGACAGTCATCACACATTTTCCTGAACGT CACGAGATTATTTCTTTCGGATCAGGTTATGGTGGTAATTCACTTCTtgg caaaaaatgttttgctttGAGAATCGCTTCCATTCTTGCCAGAGATGAAG GCTGGATGGCCGAACACATGATGattcTCGGTCTAACCAATCCAGAAGGC AAAAAACGTTATATCGCGGCTGCTTTCCCTTCTGCATGCGGAAAGACAAA CCTTGCCATGTTGACACCTACCATTCCAGGATGGAAAGCAGAATGCGTTG GAGATGACATCGCCtggatgaaatttgatgaagacGGAAATTTACGTGCC ATCAATCCTGAGTATGGCTTCTTTGGAGTTGCCCCTGGAACTTCTATGGT GACAAACCCTAATGCGTTGAAATCTTGCCAAAAGGATACTGTTTTCACCA ACACTGCAATGACTAGTGATGGAAGATATTATTGGGaaggTCTTGAAAAG GAAGTTGATTTGACTGGTATTGACGTCACTGATTGGCATGGCAACCCATG GAAACTAGGTCAAGGAACCAAGTGCTCACACCCGAACGCTCGTTTCTGTG CACCAGCAAAGAATTGCCCTGTTATCGATCCCAATTGGGAAAACCCTAAA GGCGTAATCATTGAAGCCATCTTGTTTGGCGGTCGGCGCCCTGAGGGCGT CCCACTGATCTACGAGACTCGGGACTGGACGAACGGTGTGTTCACAGCAA GCTCAATGTGTTCCGAAGCCACCTTTGCAGCTGAGTATAAGGGCAATCAA ATCATGAGAGATCCGTTCGCCATGAGACCGTTCTTTGGATACAATGCTGG TCAGTACATTCAACACTGGTTAGATATGGAAAAAGAAGGACGTAAAATGC CGAAGATTTATCACGTCAATTGGTTCCGTGTCGATCACGAAGATAAATCC TTCTTATGGCCTGGATTTTGTGAAAATTGCCGTGTATTAAAATGGATCTG CGAACGTCTAGAAGGAAAAACAGATAATTCGGACGAAACACCTCTTGGCT ATGTCCCCAAACAAGACGCACTGGACCTTGATGGCCTCGAAAAGCCGGTC AACATGAAAGAGTTGATGTCAGTACCAAAAGAGTACTGGTTGGGTCAACT GGAAGATTTGGAACATTATTATGAAGAACAATTTGGCAAAGACCTACCTC AACGAATTTGGGAAGAATTTCATGCATTGAAGGATCGATTCCTAAAAGCG TAAAATGTGTGTGTatttaaaatgacttttttttagatttgagCTTTTAT agtggtggaacttttttcgaATATTCATAAGCCTTATTTaggaaatcatt tttaaagatATGAATGGCTATGAATTCTGGAATCTTTCGATATatcactt tgaaaaattttgtataTTACCTAGAGATAGCCAAAGGTATATAGATGCAC AAAAGAAAACCTTATGTACAAACAACGAAGCACCCAACATATATCTTTAC TCTGTAAAATTTAATTTGTAATTAGCGTAA Run BLAST on NCBI protein sequence of TCONS_00016670-protein >TCONS_00016670-protein ID=TCONS_00016670-protein|Name=TCONS_00016670-protein|organism=Clytia hemisphaerica|type=polypeptide|length=622bp
MAELPDHVTVTHGSWNDLPRKVKEFTLSKIKLSKPDRLHIIDGSVDEEHK LEAKLCEKGTAIRLSGMDNCYVVRTNPADVARVESKTLICSKNKHDTIPH HKEGVNCRLGQWRHPDEMDEHLNKLFDGCMKGRTMYLIPFSMGPVGSPLS KIGIQLTDSPYVAMCMKIMTRMGSAILAQLKDEDEFVRATHSVGQPLPLV EPDPYHWPCNPEKTVITHFPERHEIISFGSGYGGNSLLGKKCFALRIASI LARDEGWMAEHMMILGLTNPEGKKRYIAAAFPSACGKTNLAMLTPTIPGW KAECVGDDIAWMKFDEDGNLRAINPEYGFFGVAPGTSMVTNPNALKSCQK DTVFTNTAMTSDGRYYWEGLEKEVDLTGIDVTDWHGNPWKLGQGTKCSHP NARFCAPAKNCPVIDPNWENPKGVIIEAILFGGRRPEGVPLIYETRDWTN GVFTASSMCSEATFAAEYKGNQIMRDPFAMRPFFGYNAGQYIQHWLDMEK EGRKMPKIYHVNWFRVDHEDKSFLWPGFCENCRVLKWICERLEGKTDNSD ETPLGYVPKQDALDLDGLEKPVNMKELMSVPKEYWLGQLEDLEHYYEEQF GKDLPQRIWEEFHALKDRFLKA Run BLAST on NCBI transcript from alignment at sc0000246:58925..62767- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00016670 ID=TCONS_00016670|Name=TCONS_00016670|organism=Clytia hemisphaerica|type=transcript|length=3843bp|location=Sequence derived from alignment at sc0000246:58925..62767- (Clytia hemisphaerica) TTAAAATGTGCTCAAAACCATTCACCATTCAGATCTTTCAGTTGTGTATA
AAACGAGGAGATGTTCAGTTGATAAATTCATACTTAGCTTTGACTAGCAG
ACAAGAAACAGTCAAAATTATTCTAAAGACAAAAGTTATCATCTATAGTT
TGGCGTTTTTATTGGAACGAATTACTTTGTTAGTATATCGGTTGAATATT
GCAACAATAACGAACGGTAAGAATTTTCATACATCTACTCTTAGATTCCC
GCTTGTTAATTTTTCGAACATTTTTATTTTTGGGTTTTCAGAAGTACAAT
TTTCAACCCCTCAGCAATAATTAGGGTCCCCCTGTTTATTTGGAGTAAGT
TCCAAATCGAAAAACTTGCAGAGAATTTTTAATCAAGTACACTTACACCG
ACTTACACTAGGTTGTTTTTGACTTTATTTGTGGGCTTTTTTTACTTTTG
ACTGATTTCAATTTTTCTTTTTGGTCAATCGCAGGTTGTGTAACGATTCA
AGATGGCTGAATTACCAGATCACGTGACAGTTACCCATGGTTCATGGAAT
GACCTTCCACGAAAAGTGAAAGAGTTCACTTTATCTAAGATCAAACTCAG
CAAACCTGACAGACTTCATATTATTGATGGTTCAGTCGACGAAGAACATA
AACTGGAAGCGAAACTTTGTGAAAAAGGAACAGCAATTCGATTGTCTGGC
ATGGATAATTGGTAAAGGAAATACACGCTTTTTTATAAGAACAATTTCAT
GAGAAGAGAAGGCTGAAAATTTGCCAAAACCTAGGAACAAATCTGAGCCT
CAGATTTCAATAATTACGTTTTTGTAAGCGCTGACCTTTTAAACTAAATT
TTGAGTTATTATTCAAAAAAAAATGTTGTAAGGATTTTGCATTTTACACC
TCTTGTCTACGTTCTAGCTATGTTGTACGAACAAATCCTGCAGACGTAGC
ACGCGTGGAGAGCAAAACGTTGATTTGCAGTAAGAACAAACACGATACCA
TCCCTCATCACAAGGAGGGCGTCAACTGCCGCCTTGGTCAATGGCGGCAC
CCTGACGAAATGGATGAACATCTCAACAAACTTTTTGATGGATGCATGAA
AGGTTAGTGTAAAAGTTTTTCAAAAATCCTGCTAAAAGCAGAATTATATA
TAATATTATTTCAGTGTTTGATTTTAGATGGTTGCCTCAAAAATCTGTAA
AATCTTTTTTTGGTAGCAAAGCTATTGTGAAGATTATGACTCGGCTATTT
CGTGTCATGGAGAGTAAATTGAACCTTTTTGAAAATCTTGTTATCTGTTT
ATAAATCCTTATCAATCTTTCGTTTAAAGGTCGAACCATGTACCTGATTC
CATTCTCAATGGGACCTGTTGGATCACCTTTATCCAAGATTGGAATCCAA
CTAACCGATTCACCATACGTTGCAATGTGCATGAAAATCATGACCAGAAT
GGGGTCTGCCATTCTCGCTCAACTTAAGGACGAAGATGAATTCGTACGAG
CGACCCATTCGGTTGGTCAACCTTTACCATTGGTTGAACCAGATCCTTAC
CACTGGCCTTGCAATCCAGAGAAGACAGTCATCACACATTTTCCTGAACG
TCACGAGATTATTTCTTTCGGATCAGGTTATGGTGGTAATTCACTTCTTG
GCAAAAAATGTTTTGCTTTGAGAATCGCTTCCATTCTTGCCAGAGATGAA
GGCTGGATGGCCGAACACATGATGGTGAGCTTCTTCTCTTTCTTTAAAAG
TTGATGAATGCCTTTACGATTTTGTTAGAATAATCCCCATGCCCTCATCA
CGCCCTTTCGTCAACTTTAAGTCGGACAGACTGACACAGCTTAAGTATAT
AATAAACAAGATATCTAAACAAGGCTTATTAGATCAGATTAATGACAGGA
TTTTGTCACTATTTTAATCAATTTAAGTTTTCCACCGTCCTTACTTGAAT
GAAATATTTTCATTTTTCAGATTCTCGGTCTAACCAATCCAGAAGGCAAA
AAACGTTATATCGCGGCTGCTTTCCCTTCTGCATGCGGAAAGACAAACCT
TGCCATGTTGACACCTACCATTCCAGGATGGAAAGCAGAATGCGTTGGAG
ATGACATCGCCTGGATGAAATTTGATGAAGACGGAAATTTACGTGCCATC
AATCCTGAGTATGGCTTCTTTGGAGTTGCCCCTGGAACTTCTATGGTGAC
AAACCCTAATGCGTTGAAATCTTGCCAAAAGGATACTGTTTTCACCAACA
CTGCAATGACTAGTGATGGAAGATATTATTGGGAAGGTATGTTTTTCAAA
ACTCTTTTTTTCATACTTGTTTATATTGCCCGAAATTTGGATTCAGTTTC
CCTCTAAAGTCAGATTTTTCTTGAGTCCCACTTTAGCGAATTGACAAAAG
AGCTTTTGCTAGTCCCAGCCATAAGCCTGTGATAAAGATGTATGAAATAA
TTTTTTTGTAAAGGTCTTGAAAAGGAAGTTGATTTGACTGGTATTGACGT
CACTGATTGGCATGGCAACCCATGGAAACTAGGTCAAGGAACCAAGTGCT
CACACCCGAACGCTCGTTTCTGTGCACCAGCAAAGAATTGCCCTGTTATC
GATCCCAATTGGGAAAACCCTAAAGGCGTAATCATTGAAGCCATCTTGTT
TGGCGGTCGGCGCCCTGAGGGCGTCCCACTGATCTACGAGACTCGGGACT
GGACGAACGGTGTGTTCACAGCAAGCTCAATGTGTTCCGAAGCCACCTTT
GCAGCTGAGTATAAGGGCAATCAAATCATGAGAGATCCGTTCGCCATGAG
ACCGTTCTTTGGATACAATGCTGGTCAGTACATTCAACACTGGTTAGATA
TGGAAAAAGAAGGACGTAAAATGCCGAAGATTTATCACGTCAATTGGTTC
CGTGTCGATCACGAAGATAAATCCTTCTTATGGCCTGGTAAGAGATACAT
TTAAATAAAAAAGATTCTCATAAATTTTTCTTTGCAATTCTAACGATTTT
GCATTGTAGATCTTCTTTCTCAGCTAACTGGCTAAACTATATAACCCAGT
CGACTAGGAGGTTAGAGTTTTACTTCTGGCTGACTGAGATTCACCAACAC
TTTTATTTACTTGATAAGTTTTGCTACTGCTGAGTCCAGTGAATTAATCT
TAATCGTCCATCTAGTTCATCAAAAAGCCTTAAAGGGGTCCCCTTAAGGG
CTAAGTTTTGACATGATCCTGACATCTCCCTGGCTTCTGCAAAAACTATG
GCGTTGTGATGATACTTTCATTTTAGGATTTTGTGAAAATTGCCGTGTAT
TAAAATGGATCTGCGAACGTCTAGAAGGAAAAACAGATAATTCGGACGAA
ACACCTCTTGGCTATGTCCCCAAACAAGACGCACTGGACCTTGATGGCCT
CGAAAAGCCGGTCAACATGAAAGAGTTGATGTCAGTACCAAAAGAGTACT
GGTTGGGTCAACTGGAAGATTTGGAACATTATTATGAAGAACAATTTGGC
AAAGACCTACCTCAACGAATTTGGGAAGAATTTCATGCATTGAAGGATCG
ATTCCTAAAAGCGTAAAATGTGTGTGTATTTAAAATGACTTTTTTTTAGA
TTTGAGCTTTTATAGTGGTGGAACTTTTTTCGAATATTCATAAGCCTTAT
TTAGGAAATCATTTTTAAAGATATGAATGGCTATGAATTCTGGAATCTTT
CGATATATCACTTTGAAAAATTTTGTATATTACCTAGAGATAGCCAAAGG
TATATAGATGCACAAAAGAAAACCTTATGTACAAACAACGAAGCACCCAA
CATATATCTTTACTCTGTAAAATTTAATTTGTAATTAGCGTAA Coding sequence (CDS) from alignment at sc0000246:58925..62767- >TCONS_00016670 ID=TCONS_00016670|Name=TCONS_00016670|organism=Clytia hemisphaerica|type=CDS|length=11214bp|location=Sequence derived from alignment at sc0000246:58925..62767- (Clytia hemisphaerica) GATTTTGTGAAAATTGCCGTGTATTAAAATGGATCTGCGAACGTCTAGAA GGAAAAACAGATAATTCGGACGAAACACCTCTTGGCTATGTCCCCAAACA AGACGCACTGGACCTTGATGGCCTCGAAAAGCCGGTCAACATGAAAGAGT TGATGTCAGTACCAAAAGAGTACTGGTTGGGTCAACTGGAAGATTTGGAA CATTATTATGAAGAACAATTTGGCAAAGACCTACCTCAACGAATTTGGGA AGAATTTCATGCATTGAAGGATCGATTCCTAAAAGCGTAAGTCTTGAAAA GGAAGTTGATTTGACTGGTATTGACGTCACTGATTGGCATGGCAACCCAT GGAAACTAGGTCAAGGAACCAAGTGCTCACACCCGAACGCTCGTTTCTGT GCACCAGCAAAGAATTGCCCTGTTATCGATCCCAATTGGGAAAACCCTAA AGGCGTAATCATTGAAGCCATCTTGTTTGGCGGTCGGCGCCCTGAGGGCG TCCCACTGATCTACGAGACTCGGGACTGGACGAACGGTGTGTTCACAGCA AGCTCAATGTGTTCCGAAGCCACCTTTGCAGCTGAGTATAAGGGCAATCA AATCATGAGAGATCCGTTCGCCATGAGACCGTTCTTTGGATACAATGCTG GTCAGTACATTCAACACTGGTTAGATATGGAAAAAGAAGGACGTAAAATG CCGAAGATTTATCACGTCAATTGGTTCCGTGTCGATCACGAAGATAAATC CTTCTTATGGCCTGATTCTCGGTCTAACCAATCCAGAAGGCAAAAAACGT TATATCGCGGCTGCTTTCCCTTCTGCATGCGGAAAGACAAACCTTGCCAT GTTGACACCTACCATTCCAGGATGGAAAGCAGAATGCGTTGGAGATGACA TCGCCTGGATGAAATTTGATGAAGACGGAAATTTACGTGCCATCAATCCT GAGTATGGCTTCTTTGGAGTTGCCCCTGGAACTTCTATGGTGACAAACCC TAATGCGTTGAAATCTTGCCAAAAGGATACTGTTTTCACCAACACTGCAA TGACTAGTGATGGAAGATATTATTGGGAAGGTCGAACCATGTACCTGATT CCATTCTCAATGGGACCTGTTGGATCACCTTTATCCAAGATTGGAATCCA ACTAACCGATTCACCATACGTTGCAATGTGCATGAAAATCATGACCAGAA TGGGGTCTGCCATTCTCGCTCAACTTAAGGACGAAGATGAATTCGTACGA GCGACCCATTCGGTTGGTCAACCTTTACCATTGGTTGAACCAGATCCTTA CCACTGGCCTTGCAATCCAGAGAAGACAGTCATCACACATTTTCCTGAAC GTCACGAGATTATTTCTTTCGGATCAGGTTATGGTGGTAATTCACTTCTT GGCAAAAAATGTTTTGCTTTGAGAATCGCTTCCATTCTTGCCAGAGATGA AGGCTGGATGGCCGAACACATGATGCTATGTTGTACGAACAAATCCTGCA GACGTAGCACGCGTGGAGAGCAAAACGTTGATTTGCAGTAAGAACAAACA CGATACCATCCCTCATCACAAGGAGGGCGTCAACTGCCGCCTTGGTCAAT GGCGGCACCCTGACGAAATGGATGAACATCTCAACAAACTTTTTGATGGA TGCATGAAAGATGGCTGAATTACCAGATCACGTGACAGTTACCCATGGTT CATGGAATGACCTTCCACGAAAAGTGAAAGAGTTCACTTTATCTAAGATC AAACTCAGCAAACCTGACAGACTTCATATTATTGATGGTTCAGTCGACGA AGAACATAAACTGGAAGCGAAACTTTGTGAAAAAGGAACAGCAATTCGAT TGTCTGGCATGGATAATTGGATTTTGTGAAAATTGCCGTGTATTAAAATG GATCTGCGAACGTCTAGAAGGAAAAACAGATAATTCGGACGAAACACCTC TTGGCTATGTCCCCAAACAAGACGCACTGGACCTTGATGGCCTCGAAAAG CCGGTCAACATGAAAGAGTTGATGTCAGTACCAAAAGAGTACTGGTTGGG TCAACTGGAAGATTTGGAACATTATTATGAAGAACAATTTGGCAAAGACC TACCTCAACGAATTTGGGAAGAATTTCATGCATTGAAGGATCGATTCCTA AAAGCGTAAGTCTTGAAAAGGAAGTTGATTTGACTGGTATTGACGTCACT GATTGGCATGGCAACCCATGGAAACTAGGTCAAGGAACCAAGTGCTCACA CCCGAACGCTCGTTTCTGTGCACCAGCAAAGAATTGCCCTGTTATCGATC CCAATTGGGAAAACCCTAAAGGCGTAATCATTGAAGCCATCTTGTTTGGC GGTCGGCGCCCTGAGGGCGTCCCACTGATCTACGAGACTCGGGACTGGAC GAACGGTGTGTTCACAGCAAGCTCAATGTGTTCCGAAGCCACCTTTGCAG CTGAGTATAAGGGCAATCAAATCATGAGAGATCCGTTCGCCATGAGACCG TTCTTTGGATACAATGCTGGTCAGTACATTCAACACTGGTTAGATATGGA AAAAGAAGGACGTAAAATGCCGAAGATTTATCACGTCAATTGGTTCCGTG TCGATCACGAAGATAAATCCTTCTTATGGCCTGATTCTCGGTCTAACCAA TCCAGAAGGCAAAAAACGTTATATCGCGGCTGCTTTCCCTTCTGCATGCG GAAAGACAAACCTTGCCATGTTGACACCTACCATTCCAGGATGGAAAGCA GAATGCGTTGGAGATGACATCGCCTGGATGAAATTTGATGAAGACGGAAA TTTACGTGCCATCAATCCTGAGTATGGCTTCTTTGGAGTTGCCCCTGGAA CTTCTATGGTGACAAACCCTAATGCGTTGAAATCTTGCCAAAAGGATACT GTTTTCACCAACACTGCAATGACTAGTGATGGAAGATATTATTGGGAAGG TCGAACCATGTACCTGATTCCATTCTCAATGGGACCTGTTGGATCACCTT TATCCAAGATTGGAATCCAACTAACCGATTCACCATACGTTGCAATGTGC ATGAAAATCATGACCAGAATGGGGTCTGCCATTCTCGCTCAACTTAAGGA CGAAGATGAATTCGTACGAGCGACCCATTCGGTTGGTCAACCTTTACCAT TGGTTGAACCAGATCCTTACCACTGGCCTTGCAATCCAGAGAAGACAGTC ATCACACATTTTCCTGAACGTCACGAGATTATTTCTTTCGGATCAGGTTA TGGTGGTAATTCACTTCTTGGCAAAAAATGTTTTGCTTTGAGAATCGCTT CCATTCTTGCCAGAGATGAAGGCTGGATGGCCGAACACATGATGCTATGT TGTACGAACAAATCCTGCAGACGTAGCACGCGTGGAGAGCAAAACGTTGA TTTGCAGTAAGAACAAACACGATACCATCCCTCATCACAAGGAGGGCGTC AACTGCCGCCTTGGTCAATGGCGGCACCCTGACGAAATGGATGAACATCT CAACAAACTTTTTGATGGATGCATGAAAGATGGCTGAATTACCAGATCAC GTGACAGTTACCCATGGTTCATGGAATGACCTTCCACGAAAAGTGAAAGA GTTCACTTTATCTAAGATCAAACTCAGCAAACCTGACAGACTTCATATTA TTGATGGTTCAGTCGACGAAGAACATAAACTGGAAGCGAAACTTTGTGAA AAAGGAACAGCAATTCGATTGTCTGGCATGGATAATTGGATTTTGTGAAA ATTGCCGTGTATTAAAATGGATCTGCGAACGTCTAGAAGGAAAAACAGAT AATTCGGACGAAACACCTCTTGGCTATGTCCCCAAACAAGACGCACTGGA CCTTGATGGCCTCGAAAAGCCGGTCAACATGAAAGAGTTGATGTCAGTAC CAAAAGAGTACTGGTTGGGTCAACTGGAAGATTTGGAACATTATTATGAA GAACAATTTGGCAAAGACCTACCTCAACGAATTTGGGAAGAATTTCATGC ATTGAAGGATCGATTCCTAAAAGCGTAAGTCTTGAAAAGGAAGTTGATTT GACTGGTATTGACGTCACTGATTGGCATGGCAACCCATGGAAACTAGGTC AAGGAACCAAGTGCTCACACCCGAACGCTCGTTTCTGTGCACCAGCAAAG AATTGCCCTGTTATCGATCCCAATTGGGAAAACCCTAAAGGCGTAATCAT TGAAGCCATCTTGTTTGGCGGTCGGCGCCCTGAGGGCGTCCCACTGATCT ACGAGACTCGGGACTGGACGAACGGTGTGTTCACAGCAAGCTCAATGTGT TCCGAAGCCACCTTTGCAGCTGAGTATAAGGGCAATCAAATCATGAGAGA TCCGTTCGCCATGAGACCGTTCTTTGGATACAATGCTGGTCAGTACATTC AACACTGGTTAGATATGGAAAAAGAAGGACGTAAAATGCCGAAGATTTAT CACGTCAATTGGTTCCGTGTCGATCACGAAGATAAATCCTTCTTATGGCC TGATTCTCGGTCTAACCAATCCAGAAGGCAAAAAACGTTATATCGCGGCT GCTTTCCCTTCTGCATGCGGAAAGACAAACCTTGCCATGTTGACACCTAC CATTCCAGGATGGAAAGCAGAATGCGTTGGAGATGACATCGCCTGGATGA AATTTGATGAAGACGGAAATTTACGTGCCATCAATCCTGAGTATGGCTTC TTTGGAGTTGCCCCTGGAACTTCTATGGTGACAAACCCTAATGCGTTGAA ATCTTGCCAAAAGGATACTGTTTTCACCAACACTGCAATGACTAGTGATG GAAGATATTATTGGGAAGGTCGAACCATGTACCTGATTCCATTCTCAATG GGACCTGTTGGATCACCTTTATCCAAGATTGGAATCCAACTAACCGATTC ACCATACGTTGCAATGTGCATGAAAATCATGACCAGAATGGGGTCTGCCA TTCTCGCTCAACTTAAGGACGAAGATGAATTCGTACGAGCGACCCATTCG GTTGGTCAACCTTTACCATTGGTTGAACCAGATCCTTACCACTGGCCTTG CAATCCAGAGAAGACAGTCATCACACATTTTCCTGAACGTCACGAGATTA TTTCTTTCGGATCAGGTTATGGTGGTAATTCACTTCTTGGCAAAAAATGT TTTGCTTTGAGAATCGCTTCCATTCTTGCCAGAGATGAAGGCTGGATGGC CGAACACATGATGCTATGTTGTACGAACAAATCCTGCAGACGTAGCACGC GTGGAGAGCAAAACGTTGATTTGCAGTAAGAACAAACACGATACCATCCC TCATCACAAGGAGGGCGTCAACTGCCGCCTTGGTCAATGGCGGCACCCTG ACGAAATGGATGAACATCTCAACAAACTTTTTGATGGATGCATGAAAGAT GGCTGAATTACCAGATCACGTGACAGTTACCCATGGTTCATGGAATGACC TTCCACGAAAAGTGAAAGAGTTCACTTTATCTAAGATCAAACTCAGCAAA CCTGACAGACTTCATATTATTGATGGTTCAGTCGACGAAGAACATAAACT GGAAGCGAAACTTTGTGAAAAAGGAACAGCAATTCGATTGTCTGGCATGG ATAATTGGATTTTGTGAAAATTGCCGTGTATTAAAATGGATCTGCGAACG TCTAGAAGGAAAAACAGATAATTCGGACGAAACACCTCTTGGCTATGTCC CCAAACAAGACGCACTGGACCTTGATGGCCTCGAAAAGCCGGTCAACATG AAAGAGTTGATGTCAGTACCAAAAGAGTACTGGTTGGGTCAACTGGAAGA TTTGGAACATTATTATGAAGAACAATTTGGCAAAGACCTACCTCAACGAA TTTGGGAAGAATTTCATGCATTGAAGGATCGATTCCTAAAAGCGTAAGTC TTGAAAAGGAAGTTGATTTGACTGGTATTGACGTCACTGATTGGCATGGC AACCCATGGAAACTAGGTCAAGGAACCAAGTGCTCACACCCGAACGCTCG TTTCTGTGCACCAGCAAAGAATTGCCCTGTTATCGATCCCAATTGGGAAA ACCCTAAAGGCGTAATCATTGAAGCCATCTTGTTTGGCGGTCGGCGCCCT GAGGGCGTCCCACTGATCTACGAGACTCGGGACTGGACGAACGGTGTGTT CACAGCAAGCTCAATGTGTTCCGAAGCCACCTTTGCAGCTGAGTATAAGG GCAATCAAATCATGAGAGATCCGTTCGCCATGAGACCGTTCTTTGGATAC AATGCTGGTCAGTACATTCAACACTGGTTAGATATGGAAAAAGAAGGACG TAAAATGCCGAAGATTTATCACGTCAATTGGTTCCGTGTCGATCACGAAG ATAAATCCTTCTTATGGCCTGATTCTCGGTCTAACCAATCCAGAAGGCAA AAAACGTTATATCGCGGCTGCTTTCCCTTCTGCATGCGGAAAGACAAACC TTGCCATGTTGACACCTACCATTCCAGGATGGAAAGCAGAATGCGTTGGA GATGACATCGCCTGGATGAAATTTGATGAAGACGGAAATTTACGTGCCAT CAATCCTGAGTATGGCTTCTTTGGAGTTGCCCCTGGAACTTCTATGGTGA CAAACCCTAATGCGTTGAAATCTTGCCAAAAGGATACTGTTTTCACCAAC ACTGCAATGACTAGTGATGGAAGATATTATTGGGAAGGTCGAACCATGTA CCTGATTCCATTCTCAATGGGACCTGTTGGATCACCTTTATCCAAGATTG GAATCCAACTAACCGATTCACCATACGTTGCAATGTGCATGAAAATCATG ACCAGAATGGGGTCTGCCATTCTCGCTCAACTTAAGGACGAAGATGAATT CGTACGAGCGACCCATTCGGTTGGTCAACCTTTACCATTGGTTGAACCAG ATCCTTACCACTGGCCTTGCAATCCAGAGAAGACAGTCATCACACATTTT CCTGAACGTCACGAGATTATTTCTTTCGGATCAGGTTATGGTGGTAATTC ACTTCTTGGCAAAAAATGTTTTGCTTTGAGAATCGCTTCCATTCTTGCCA GAGATGAAGGCTGGATGGCCGAACACATGATGCTATGTTGTACGAACAAA TCCTGCAGACGTAGCACGCGTGGAGAGCAAAACGTTGATTTGCAGTAAGA ACAAACACGATACCATCCCTCATCACAAGGAGGGCGTCAACTGCCGCCTT GGTCAATGGCGGCACCCTGACGAAATGGATGAACATCTCAACAAACTTTT TGATGGATGCATGAAAGATGGCTGAATTACCAGATCACGTGACAGTTACC CATGGTTCATGGAATGACCTTCCACGAAAAGTGAAAGAGTTCACTTTATC TAAGATCAAACTCAGCAAACCTGACAGACTTCATATTATTGATGGTTCAG TCGACGAAGAACATAAACTGGAAGCGAAACTTTGTGAAAAAGGAACAGCA ATTCGATTGTCTGGCATGGATAATTGGATTTTGTGAAAATTGCCGTGTAT TAAAATGGATCTGCGAACGTCTAGAAGGAAAAACAGATAATTCGGACGAA ACACCTCTTGGCTATGTCCCCAAACAAGACGCACTGGACCTTGATGGCCT CGAAAAGCCGGTCAACATGAAAGAGTTGATGTCAGTACCAAAAGAGTACT GGTTGGGTCAACTGGAAGATTTGGAACATTATTATGAAGAACAATTTGGC AAAGACCTACCTCAACGAATTTGGGAAGAATTTCATGCATTGAAGGATCG ATTCCTAAAAGCGTAAGTCTTGAAAAGGAAGTTGATTTGACTGGTATTGA CGTCACTGATTGGCATGGCAACCCATGGAAACTAGGTCAAGGAACCAAGT GCTCACACCCGAACGCTCGTTTCTGTGCACCAGCAAAGAATTGCCCTGTT ATCGATCCCAATTGGGAAAACCCTAAAGGCGTAATCATTGAAGCCATCTT GTTTGGCGGTCGGCGCCCTGAGGGCGTCCCACTGATCTACGAGACTCGGG ACTGGACGAACGGTGTGTTCACAGCAAGCTCAATGTGTTCCGAAGCCACC TTTGCAGCTGAGTATAAGGGCAATCAAATCATGAGAGATCCGTTCGCCAT GAGACCGTTCTTTGGATACAATGCTGGTCAGTACATTCAACACTGGTTAG ATATGGAAAAAGAAGGACGTAAAATGCCGAAGATTTATCACGTCAATTGG TTCCGTGTCGATCACGAAGATAAATCCTTCTTATGGCCTGATTCTCGGTC TAACCAATCCAGAAGGCAAAAAACGTTATATCGCGGCTGCTTTCCCTTCT GCATGCGGAAAGACAAACCTTGCCATGTTGACACCTACCATTCCAGGATG GAAAGCAGAATGCGTTGGAGATGACATCGCCTGGATGAAATTTGATGAAG ACGGAAATTTACGTGCCATCAATCCTGAGTATGGCTTCTTTGGAGTTGCC CCTGGAACTTCTATGGTGACAAACCCTAATGCGTTGAAATCTTGCCAAAA GGATACTGTTTTCACCAACACTGCAATGACTAGTGATGGAAGATATTATT GGGAAGGTCGAACCATGTACCTGATTCCATTCTCAATGGGACCTGTTGGA TCACCTTTATCCAAGATTGGAATCCAACTAACCGATTCACCATACGTTGC AATGTGCATGAAAATCATGACCAGAATGGGGTCTGCCATTCTCGCTCAAC TTAAGGACGAAGATGAATTCGTACGAGCGACCCATTCGGTTGGTCAACCT TTACCATTGGTTGAACCAGATCCTTACCACTGGCCTTGCAATCCAGAGAA GACAGTCATCACACATTTTCCTGAACGTCACGAGATTATTTCTTTCGGAT CAGGTTATGGTGGTAATTCACTTCTTGGCAAAAAATGTTTTGCTTTGAGA ATCGCTTCCATTCTTGCCAGAGATGAAGGCTGGATGGCCGAACACATGAT GCTATGTTGTACGAACAAATCCTGCAGACGTAGCACGCGTGGAGAGCAAA ACGTTGATTTGCAGTAAGAACAAACACGATACCATCCCTCATCACAAGGA GGGCGTCAACTGCCGCCTTGGTCAATGGCGGCACCCTGACGAAATGGATG AACATCTCAACAAACTTTTTGATGGATGCATGAAAGATGGCTGAATTACC AGATCACGTGACAGTTACCCATGGTTCATGGAATGACCTTCCACGAAAAG TGAAAGAGTTCACTTTATCTAAGATCAAACTCAGCAAACCTGACAGACTT CATATTATTGATGGTTCAGTCGACGAAGAACATAAACTGGAAGCGAAACT TTGTGAAAAAGGAACAGCAATTCGATTGTCTGGCATGGATAATTGGATTT TGTGAAAATTGCCGTGTATTAAAATGGATCTGCGAACGTCTAGAAGGAAA AACAGATAATTCGGACGAAACACCTCTTGGCTATGTCCCCAAACAAGACG CACTGGACCTTGATGGCCTCGAAAAGCCGGTCAACATGAAAGAGTTGATG TCAGTACCAAAAGAGTACTGGTTGGGTCAACTGGAAGATTTGGAACATTA TTATGAAGAACAATTTGGCAAAGACCTACCTCAACGAATTTGGGAAGAAT TTCATGCATTGAAGGATCGATTCCTAAAAGCGTAAGTCTTGAAAAGGAAG TTGATTTGACTGGTATTGACGTCACTGATTGGCATGGCAACCCATGGAAA CTAGGTCAAGGAACCAAGTGCTCACACCCGAACGCTCGTTTCTGTGCACC AGCAAAGAATTGCCCTGTTATCGATCCCAATTGGGAAAACCCTAAAGGCG TAATCATTGAAGCCATCTTGTTTGGCGGTCGGCGCCCTGAGGGCGTCCCA CTGATCTACGAGACTCGGGACTGGACGAACGGTGTGTTCACAGCAAGCTC AATGTGTTCCGAAGCCACCTTTGCAGCTGAGTATAAGGGCAATCAAATCA TGAGAGATCCGTTCGCCATGAGACCGTTCTTTGGATACAATGCTGGTCAG TACATTCAACACTGGTTAGATATGGAAAAAGAAGGACGTAAAATGCCGAA GATTTATCACGTCAATTGGTTCCGTGTCGATCACGAAGATAAATCCTTCT TATGGCCTGATTCTCGGTCTAACCAATCCAGAAGGCAAAAAACGTTATAT CGCGGCTGCTTTCCCTTCTGCATGCGGAAAGACAAACCTTGCCATGTTGA CACCTACCATTCCAGGATGGAAAGCAGAATGCGTTGGAGATGACATCGCC TGGATGAAATTTGATGAAGACGGAAATTTACGTGCCATCAATCCTGAGTA TGGCTTCTTTGGAGTTGCCCCTGGAACTTCTATGGTGACAAACCCTAATG CGTTGAAATCTTGCCAAAAGGATACTGTTTTCACCAACACTGCAATGACT AGTGATGGAAGATATTATTGGGAAGGTCGAACCATGTACCTGATTCCATT CTCAATGGGACCTGTTGGATCACCTTTATCCAAGATTGGAATCCAACTAA CCGATTCACCATACGTTGCAATGTGCATGAAAATCATGACCAGAATGGGG TCTGCCATTCTCGCTCAACTTAAGGACGAAGATGAATTCGTACGAGCGAC CCATTCGGTTGGTCAACCTTTACCATTGGTTGAACCAGATCCTTACCACT GGCCTTGCAATCCAGAGAAGACAGTCATCACACATTTTCCTGAACGTCAC GAGATTATTTCTTTCGGATCAGGTTATGGTGGTAATTCACTTCTTGGCAA AAAATGTTTTGCTTTGAGAATCGCTTCCATTCTTGCCAGAGATGAAGGCT GGATGGCCGAACACATGATGCTATGTTGTACGAACAAATCCTGCAGACGT AGCACGCGTGGAGAGCAAAACGTTGATTTGCAGTAAGAACAAACACGATA CCATCCCTCATCACAAGGAGGGCGTCAACTGCCGCCTTGGTCAATGGCGG CACCCTGACGAAATGGATGAACATCTCAACAAACTTTTTGATGGATGCAT GAAAGATGGCTGAATTACCAGATCACGTGACAGTTACCCATGGTTCATGG AATGACCTTCCACGAAAAGTGAAAGAGTTCACTTTATCTAAGATCAAACT CAGCAAACCTGACAGACTTCATATTATTGATGGTTCAGTCGACGAAGAAC ATAAACTGGAAGCGAAACTTTGTGAAAAAGGAACAGCAATTCGATTGTCT GGCATGGATAATTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00016670-exon-sc0000246-1575043694:62552..62767 | TCONS_00016670-exon-sc0000246-1575043694:62552..62767 | Clytia hemisphaerica | exon |
TCONS_00016670-exon-sc0000246-1575043694:62057..62283 | TCONS_00016670-exon-sc0000246-1575043694:62057..62283 | Clytia hemisphaerica | exon |
TCONS_00016670-exon-sc0000246-1575043694:61666..61850 | TCONS_00016670-exon-sc0000246-1575043694:61666..61850 | Clytia hemisphaerica | exon |
TCONS_00016670-exon-sc0000246-1575043694:61044..61438 | TCONS_00016670-exon-sc0000246-1575043694:61044..61438 | Clytia hemisphaerica | exon |
TCONS_00016670-exon-sc0000246-1575043694:60482..60797 | TCONS_00016670-exon-sc0000246-1575043694:60482..60797 | Clytia hemisphaerica | exon |
TCONS_00016670-exon-sc0000246-1575043694:59831..60304 | TCONS_00016670-exon-sc0000246-1575043694:59831..60304 | Clytia hemisphaerica | exon |
TCONS_00016670-exon-sc0000246-1575043694:58925..59491 | TCONS_00016670-exon-sc0000246-1575043694:58925..59491 | Clytia hemisphaerica | exon |
TCONS_00016670-exon-sc0000246-1510915933:62552..62767 | TCONS_00016670-exon-sc0000246-1510915933:62552..62767 | Clytia hemisphaerica | exon |
TCONS_00016670-exon-sc0000246-1510915933:62057..62283 | TCONS_00016670-exon-sc0000246-1510915933:62057..62283 | Clytia hemisphaerica | exon |
TCONS_00016670-exon-sc0000246-1510915933:61666..61850 | TCONS_00016670-exon-sc0000246-1510915933:61666..61850 | Clytia hemisphaerica | exon |
TCONS_00016670-exon-sc0000246-1510915933:61044..61438 | TCONS_00016670-exon-sc0000246-1510915933:61044..61438 | Clytia hemisphaerica | exon |
TCONS_00016670-exon-sc0000246-1510915933:60482..60797 | TCONS_00016670-exon-sc0000246-1510915933:60482..60797 | Clytia hemisphaerica | exon |
TCONS_00016670-exon-sc0000246-1510915933:59831..60304 | TCONS_00016670-exon-sc0000246-1510915933:59831..60304 | Clytia hemisphaerica | exon |
TCONS_00016670-exon-sc0000246-1510915933:58925..59491 | TCONS_00016670-exon-sc0000246-1510915933:58925..59491 | Clytia hemisphaerica | exon |
TCONS_00016670-exon-sc0000246-1491911889:62552..62767 | TCONS_00016670-exon-sc0000246-1491911889:62552..62767 | Clytia hemisphaerica | exon |
TCONS_00016670-exon-sc0000246-1491911889:62057..62283 | TCONS_00016670-exon-sc0000246-1491911889:62057..62283 | Clytia hemisphaerica | exon |
TCONS_00016670-exon-sc0000246-1491911889:61666..61850 | TCONS_00016670-exon-sc0000246-1491911889:61666..61850 | Clytia hemisphaerica | exon |
TCONS_00016670-exon-sc0000246-1491911889:61044..61438 | TCONS_00016670-exon-sc0000246-1491911889:61044..61438 | Clytia hemisphaerica | exon |
TCONS_00016670-exon-sc0000246-1491911889:60482..60797 | TCONS_00016670-exon-sc0000246-1491911889:60482..60797 | Clytia hemisphaerica | exon |
TCONS_00016670-exon-sc0000246-1491911889:59831..60304 | TCONS_00016670-exon-sc0000246-1491911889:59831..60304 | Clytia hemisphaerica | exon |
TCONS_00016670-exon-sc0000246-1491911889:58925..59491 | TCONS_00016670-exon-sc0000246-1491911889:58925..59491 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
sc0000246 | supercontig | sc0000246:58925..62767 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
Term | Definition |
GO:0004611 | phosphoenolpyruvate carboxykinase activity |
GO:0017076 | purine nucleotide binding |
GO:0005525 | GTP binding |
GO:0004613 | phosphoenolpyruvate carboxykinase (GTP) activity |
Vocabulary: Biological Process
Term | Definition |
GO:0006094 | gluconeogenesis |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category |
Term Accession |
Term Name |
biological_process |
GO:0006094 |
gluconeogenesis |
molecular_function |
GO:0005525 |
GTP binding |
molecular_function |
GO:0004611 |
phosphoenolpyruvate carboxykinase activity |
molecular_function |
GO:0004613 |
phosphoenolpyruvate carboxykinase (GTP) activity |
molecular_function |
GO:0017076 |
purine nucleotide binding |
Blast
BLAST of TCONS_00016670 vs. Swiss-Prot (Human)
Match: PCKGC (Phosphoenolpyruvate carboxykinase, cytosolic [GTP] OS=Homo sapiens GN=PCK1 PE=1 SV=3) HSP 1 Score: 754.977 bits (1948), Expect = 0.000e+0 Identity = 361/611 (59.08%), Postives = 460/611 (75.29%), Query Frame = 1
Query: 262 VTHGSWNDLPRKVKEFTLSKIKLSKPDRLHIIDGSVDEEHKLEAKLCEKGTAIRLSGMDNCYVVRTNPADVARVESKTLICSKNKHDTIPHHKEGVNCRLGQWRHPDEMDEHLNKLFDGCMKGRTMYLIPFSMGPVGSPLSKIGIQLTDSPYVAMCMKIMTRMGSAILAQLKDEDEFVRATHSVGQPLPLVEPDPYHWPCNPEKTVITHFPERHEIISFGSGYGGNSLLGKKCFALRIASILARDEGWMAEHMMILGLTNPEGKKRYIAAAFPSACGKTNLAMLTPTIPGWKAECVGDDIAWMKFDEDGNLRAINPEYGFFGVAPGTSMVTNPNALKSCQKDTVFTNTAMTSDGRYYWEGLEKEVDLTGIDVTDWHGNPWKLGQGTKCSHPNARFCAPAKNCPVIDPNWENPKGVIIEAILFGGRRPEGVPLIYETRDWTNGVFTASSMCSEATFAAEYKGNQIMRDPFAMRPFFGYNAGQYIQHWLDMEKE-GRKMPKIYHVNWFRVDHEDKSFLWPGFCENCRVLKWICERLEGKTDNSDETPLGYVPKQDALDLDGLEKPVNMKELMSVPKEYWLGQLEDLEHYYEEQFGKDLPQRIWEEFHALKDRF 2091
V GS + LP+ V+EF + +L +PD +HI DGS +E +L ++ E+G RL DNC++ T+P DVAR+ESKT+I ++ + DT+P K G++ +LG+W ++ ++ N F GCMKGRTMY+IPFSMGP+GSPLSKIGI+LTDSPYV M+IMTRMG+ +L + D EFV+ HSVG PLPL +P +WPCNPE T+I H P+R EIISFGSGYGGNSLLGKKCFALR+AS LA++EGW+AEHM+ILG+TNPEG+K+Y+AAAFPSACGKTNLAM+ P++PGWK ECVGDDIAWMKFD G+LRAINPE GFFGVAPGTS+ TNPNA+K+ QK+T+FTN A TSDG YWEG+++ + +G+ +T W W G C+HPN+RFC PA CP+ID WE+P+GV IE I+FGGRRP GVPL+YE W +GVF ++M SEAT AAE+KG IM DPFAMRPFFGYN G+Y+ HWL M + K+PKI+HVNWFR D E K FLWPGF EN RVL+W+ R++GK ++ TP+GY+PK+DAL+L GL +NM EL S+ KE+W ++ED+E Y E+Q DLP I E ALK R
Sbjct: 15 VVQGSLDSLPQAVREFLENNAELCQPDHIHICDGSEEENGRLLGQMEEEGILRRLKKYDNCWLALTDPRDVARIESKTVIVTQEQRDTVPIPKTGLS-QLGRWMSEEDFEKAFNARFPGCMKGRTMYVIPFSMGPLGSPLSKIGIELTDSPYVVASMRIMTRMGTPVLEAVGD-GEFVKCLHSVGCPLPLQKPLVNNWPCNPELTLIAHLPDRREIISFGSGYGGNSLLGKKCFALRMASRLAKEEGWLAEHMLILGITNPEGEKKYLAAAFPSACGKTNLAMMNPSLPGWKVECVGDDIAWMKFDAQGHLRAINPENGFFGVAPGTSVKTNPNAIKTIQKNTIFTNVAETSDGGVYWEGIDEPL-ASGVTITSWKNKEWSSEDGEPCAHPNSRFCTPASQCPIIDAAWESPEGVPIEGIIFGGRRPAGVPLVYEALSWQHGVFVGAAMRSEATAAAEHKGKIIMHDPFAMRPFFGYNFGKYLAHWLSMAQHPAAKLPKIFHVNWFRKDKEGK-FLWPGFGENSRVLEWMFNRIDGKA-STKLTPIGYIPKEDALNLKGLGH-INMMELFSISKEFWEKEVEDIEKYLEDQVNADLPCEIEREILALKQRI 619
The following BLAST results are available for this feature:
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