TCONS_00016573 (transcript) - C. hemisphaerica

Overview
NameTCONS_00016573
Unique NameTCONS_00016573
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1348

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00016573 ID=TCONS_00016573|Name=TCONS_00016573|organism=Clytia hemisphaerica|type=transcript|length=1348bp
gtttagagCAATAAAAAACATACCGAATGTAAAACAGTTATGGCTTTTCC
CCTGCTTCGAAGCCGATGGTGTATGCTTGATAAACAGCAGATGAAATATG
CCAGTTCGATTGTATATATTGTGCAAGATGTGAAGCATGTACCTCGAGGG
ATGACCAAAGTCTTGGATCACCTTTATCTTGGTGATTGGGAAGATGCTAC
CAATGTTGAGAAATTAAAGGAAAcagGCATCACACACATTATCAACACGG
TCGATGAGTTATACGAAAATTGTCGAACAAAGAAAGAATTTTACGGACCA
GATATTGAATATATGGGATTTACATCACTAGATGACGAAAGTTACGACAT
AATGAAACATTTTGAAGAAGTTCATAAATTCATTGAAAGCGCAAAAGCAT
CAGGTGGCAAATGTTTTATTCATTGCATGGCAGGGATCAATAGAAGTGGT
TGCTTAGCAACAGCACATGTTATGTTAGATCAAAAAATGGGACCAATAAC
AGCGGCAcgatttatttttgagaaaagagGTATGTTGCTTTCGAATTCTG
GATTCGTAGAACGTTTGGTAAATTTTGCTGTTGACCGTGAGTTACTGGAG
TTAGATAAAGACAATTTGCTCTCACCATTTAAAAGCAGTAGTAGTGTAAG
GAATGCTGATAACAATCACAGCGAAGTTGTTATTTAATGTAAACttcgaa
tcaatttttttatgtcTGAGGTAAGAGGTGTAAATTTAAGTTCAATGTTC
AGTAcctcaagtgaaaaaaaaaatttaaaagattaaCTTATCACACCCAA
GTCACTTTTATATGGGAGATTTCGGGGAGATTTCACAGATATTATATTCT
TTTACACTCTTTAAATTGCCTACATAATTCACATATGCTTTCAAGGTGCT
AATCCACCACACGCTAGAAAATAGCGCCCATAAGCTACAGTGTAAATAGG
GACGATAAGGTAGTCCTAGGTTCGAAATTGGCCAGATATTATCAAATTTC
AagtgaaaaattgttttgttttttattatctGTAATCACTTTGttataaa
tgtattttaaagaatttatttCGTAAttgtttaaattattttatacCATT
TTATATAATACAAGTCTTTATATTGTNTtattcttttggaaattatgagc
tcattgactgctgtaactaactttttatgtttatttagtgggaaatggtt
tgttttattggttggaaatgttatgtattgcttgtttgtagtttattcag
tgtttgaggtaagtttctgcctccttattctttagtatgacggtacatta
agggtgaggactggaggcttgtcggccgtcatCGACCGTCACCGAAAC
Run BLAST on NCBI

protein sequence of TCONS_00016573-protein

>TCONS_00016573-protein ID=TCONS_00016573-protein|Name=TCONS_00016573-protein|organism=Clytia hemisphaerica|type=polypeptide|length=215bp
MAFPLLRSRWCMLDKQQMKYASSIVYIVQDVKHVPRGMTKVLDHLYLGDW
EDATNVEKLKETGITHIINTVDELYENCRTKKEFYGPDIEYMGFTSLDDE
SYDIMKHFEEVHKFIESAKASGGKCFIHCMAGINRSGCLATAHVMLDQKM
GPITAARFIFEKRGMLLSNSGFVERLVNFAVDRELLELDKDNLLSPFKSS
SSVRNADNNHSEVVI
Run BLAST on NCBI

transcript from alignment at sc0000243:45653..48519+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00016573 ID=TCONS_00016573|Name=TCONS_00016573|organism=Clytia hemisphaerica|type=transcript|length=2867bp|location=Sequence derived from alignment at sc0000243:45653..48519+ (Clytia hemisphaerica)
gtttagagCAATAAAAAACATACCGAATGTAAAACAGTTATGGCTTTTCC
CCTGCTTCGAAGCCGATGGTGTATGCTTGATAAACAGCAGATGAAATATG
CCAGTTCGATTGTATATATTGTGCAAGATGTGAAGCATGTACCTCGAGGG
ATGACCAAAGTCTTGGATCACCTTTATCTTGGTGATTGGGAAGATGCTAC
CAATGTTGAGAAATTAAAGGAAAcaggtacacattttttaatttataaga
acatcaaaaacttttgaagccttcagatgttcttaattctTAACGTGtgc
ttattttcatcattttgtgagtattttagtccattttcctaaaaatcggg
tgttttagagtctaccatagtgtcctcccccccctttataaagggggggg
ggaggaccTTTATCTCAGCAATcaaggtcagtccacatgaaatcatgtga
ttagatcatgattgaaaaaataaccaattttcgttctattttgtctagta
ttccttttgcagcaaaattttacgtttgtgccaggttgaaatttgagaaa
tttatatcggtatatggggggaactagtattttcagaattttctgggggg
aaagcaaaaaagagggggaaaaCTAAAAAACCGAAAGGTCctagggggaa
aaaaaagaggagggagattttaaaaaatcaagaatttggtggggggaaca
aaccctggtgtccacaaagtcttaaaatgttttttaacttgttcttaata
ataTTTTGGTCACCGAAGCCTTATAGGACCATCCCAAGAAATTGTCAACC
ACGGCTTGAGGTCGTCTATGCTCGCTTGAATTGCTTTTCTATGGGTGCTT
TCAAATGGTGTATGGGTCGCGGCGCTCCTAGGTCGCTACCGGCGGTATCC
AGTCAGAAACGAGTGTGGCGTTACTAGCACGTCCCCTTTCTCTGGAATGG
ttgtatgttcttatatagtttgtttaaaaaaaaaaagatgatttgataaa
tcattttcttcaaaGTTAGGGGTCAGAATTAGAGCCCGTTCGATGTTCGA
GTCCAACGACGTCTTTTAGAGCTAGAGGACTTCGAAAATAGACTATGTTT
CAaactatctttgtgcaaaatttcaagttgtattTCAATGTGCTGCTTGA
GATATAAAAGGATTTCTAATGCCATACCTCAATTAAAATCTTAATAAATC
CCTTCCTGCAGTATTTCAGAACTATTTTCAATCAATCAGAAAAGTTCCTT
ATTTAGTTTTGGTTGTTTCGAAGTATTACTTTAAGGAATACCATCTTCCT
TTAAAGAGGGATGCGAATAAAAGGTCCAGAATATATTAATGAAATGACGC
TAGGGAAAATTGcaaggaaaaacaaaatttcgatAAATAGAACGTCgaag
taaaattaaaatgaGTGACAACTTCTAAAAGATCATGATATTCTTTAGCA
GAAAGATTTATTACAACACTCTCTTGTTTGCaacaaacatttaaaaaaat
acaatcgTTTAAAGACCTGTAAGGTCCATTACGATTCGATGACAATCATG
TCTAGATCGTACTAGTGCTTCAAATAACTGTAATCTTTTTCTCATTGATT
AACAGAGGTTTCGCTTGTCTGGACGTCAGatctctacaaaaccgcaggta
gtatcAGGAGTATGAATCCTTCAGTGGATGCCAACATCCTAAGGTTTCGC
CTGCTTACAAACTGACAATCTGATTTAAGCTCTCCTATTTTCCAGGCATC
ACACACATTATCAACACGGTCGATGAGTTATACGAAAATTGTCGAACAAA
GAAAGAATTTTACGGACCAGATATTGAATATATGGGATTTACATCACTAG
ATGACGAAAGTTACGACATAATGAAACATTTTGAAGAAGTTCATAAATTC
ATTGAAAGCGCAAAAGCATCAGGTGGCAAATGTTTTATTCATTGCATGGC
AGGGATCAATAGAAGTGGTTGCTTAGCAACAGCACATGTTATGTTAGATC
AAAAAATGGGACCAATAACAGCGGCAcgatttatttttgagaaaagagGT
ATGTTGCTTTCGAATTCTGGATTCGTAGAACGTTTGGTAAATTTTGCTGT
TGACCGTGAGTTACTGGAGTTAGATAAAGACAATTTGCTCTCACCATTTA
AAAGCAGTAGTAGTGTAAGGAATGCTGATAACAATCACAGCGAAGTTGTT
ATTTAATGTAAACttcgaatcaatttttttatgtcTGAGGTAAGAGGTGT
AAATTTAAGTTCAATGTTCAGTAcctcaagtgaaaaaaaaaatttaaaag
attaaCTTATCACACCCAAGTCACTTTTATATGGGAGATTTCGGGGAGAT
TTCACAGATATTATATTCTTTTACACTCTTTAAATTGCCTACATAATTCA
CATATGCTTTCAAGGTGCTAATCCACCACACGCTAGAAAATAGCGCCCAT
AAGCTACAGTGTAAATAGGGACGATAAGGTAGTCCTAGGTTCGAAATTGG
CCAGATATTATCAAATTTCAagtgaaaaattgttttgttttttattatct
GTAATCACTTTGttataaatgtattttaaagaatttatttCGTAAttgtt
taaattattttatacCATTTTATATAATACAAGTCTTTATATTGTNTtat
tcttttggaaattatgagctcattgactgctgtaactaactttttatgtt
tatttagtgggaaatggtttgttttattggttggaaatgttatgtattgc
ttgtttgtagtttattcagtgtttgaggtaagtttctgcctccttattct
ttagtatgacggtacattaagggtgaggactggaggcttgtcggccgtca
tCGACCGTCACCGAAAC

Coding sequence (CDS) from alignment at sc0000243:45653..48519+

>TCONS_00016573 ID=TCONS_00016573|Name=TCONS_00016573|organism=Clytia hemisphaerica|type=CDS|length=1296bp|location=Sequence derived from alignment at sc0000243:45653..48519+ (Clytia hemisphaerica)
ATGGCTTTTCCCCTGCTTCGAAGCCGATGGTGTATGCTTGATAAACAGCA
GATGAAATATGCCAGTTCGATTGTATATATTGTGCAAGATGTGAAGCATG
TACCTCGAGGGATGACCAAAGTCTTGGATCACCTTTATCTTGGTGATTGG
GAAGATGCTACCAATGTTGAGAAATTAAAGGAAAcagGCATCACACACAT
TATCAACACGGTCGATGAGTTATACGAAAATTGTCGAACAAAGAAAGAAT
TTTACGGACCAGATATTGAATATATGGGATTTACATCACTAGATGACGAA
AGTTACGACATAATGAAACATTTTGAAGAAGTTCATAAATTCATTGAAAG
CGCAAAAGCATCAGGTGGCAAATGTTTTATTCATTGCATGGCAGGGATCA
ATAGAAGTGGTTGCTTAGCAACAGCACATGTTATGTTAGATCAAAAAATG
GGACCAATAACAGCGGCAcgatttatttttgagaaaagagGTATGTTGCT
TTCGAATTCTGGATTCGTAGAACGTTTGGTAAATTTTGCTGTTGACCGTG
AGTTACTGGAGTTAGATAAAGACAATTTGCTCTCACCATTTAAAAGCAGT
AGTAGTGTAAGGAATGCTGATAACAATCACAGCGAAGTTGTTATTTAAAT
GGCTTTTCCCCTGCTTCGAAGCCGATGGTGTATGCTTGATAAACAGCAGA
TGAAATATGCCAGTTCGATTGTATATATTGTGCAAGATGTGAAGCATGTA
CCTCGAGGGATGACCAAAGTCTTGGATCACCTTTATCTTGGTGATTGGGA
AGATGCTACCAATGTTGAGAAATTAAAGGAAAcagGCATCACACACATTA
TCAACACGGTCGATGAGTTATACGAAAATTGTCGAACAAAGAAAGAATTT
TACGGACCAGATATTGAATATATGGGATTTACATCACTAGATGACGAAAG
TTACGACATAATGAAACATTTTGAAGAAGTTCATAAATTCATTGAAAGCG
CAAAAGCATCAGGTGGCAAATGTTTTATTCATTGCATGGCAGGGATCAAT
AGAAGTGGTTGCTTAGCAACAGCACATGTTATGTTAGATCAAAAAATGGG
ACCAATAACAGCGGCAcgatttatttttgagaaaagagGTATGTTGCTTT
CGAATTCTGGATTCGTAGAACGTTTGGTAAATTTTGCTGTTGACCGTGAG
TTACTGGAGTTAGATAAAGACAATTTGCTCTCACCATTTAAAAGCAGTAG
TAGTGTAAGGAATGCTGATAACAATCACAGCGAAGTTGTTATTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009265XLOC_009265Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00016573-proteinTCONS_00016573-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00016573-exon-sc0000243-1491911889:45653..45878TCONS_00016573-exon-sc0000243-1491911889:45653..45878Clytia hemisphaericaexon
TCONS_00016573-exon-sc0000243-1510915933:45653..45878TCONS_00016573-exon-sc0000243-1510915933:45653..45878Clytia hemisphaericaexon
TCONS_00016573-exon-sc0000243-1575043694:45653..45878TCONS_00016573-exon-sc0000243-1575043694:45653..45878Clytia hemisphaericaexon
TCONS_00016573-exon-sc0000243-1491911889:47398..48519TCONS_00016573-exon-sc0000243-1491911889:47398..48519Clytia hemisphaericaexon
TCONS_00016573-exon-sc0000243-1510915933:47398..48519TCONS_00016573-exon-sc0000243-1510915933:47398..48519Clytia hemisphaericaexon
TCONS_00016573-exon-sc0000243-1575043694:47398..48519TCONS_00016573-exon-sc0000243-1575043694:47398..48519Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000243supercontigsc0000243:45653..48519 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.64209	2.23045	1.81662	1.2863	2.42258	1.75352	3.02362	2.89006	3.08508	4.25698	2.54511	1.17168	3.06967	2.91281	1.52677	1.61866	1.78563	2.04227	1.40981	2.36353	2.39215	1.82487	4.76446	4.1946	6.77686	9.22309	2.14134	1.87214	2.43364	2.53176
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR020422TYR_PHOSPHATASE_DUAL_dom
IPR000340Dual-sp_phosphatase_cat-dom
IPR029021Prot-tyrosine_phosphatase-like
IPR016130Tyr_Pase_AS
IPR000387TYR_PHOSPHATASE_dom
Vocabulary: Molecular Function
TermDefinition
GO:0008138protein tyrosine/serine/threonine phosphatase activity
GO:0004725protein tyrosine phosphatase activity
GO:0016791phosphatase activity
Vocabulary: Biological Process
TermDefinition
GO:0006470protein dephosphorylation
GO:0016311dephosphorylation
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0016311 dephosphorylation
biological_process GO:0006470 protein dephosphorylation
molecular_function GO:0016791 phosphatase activity
molecular_function GO:0004725 protein tyrosine phosphatase activity
molecular_function GO:0008138 protein tyrosine/serine/threonine phosphatase activity
Blast
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BLAST of TCONS_00016573 vs. Swiss-Prot (Human)
Match: DUS26 (Dual specificity protein phosphatase 26 OS=Homo sapiens GN=DUSP26 PE=1 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 2.019e-19
Identity = 49/147 (33.33%), Postives = 80/147 (54.42%), Query Frame = 1 
Query:  157 KVLDHLYLGDWEDATNVEKLKETGITHIINTVDELYENCRTKKEFYGPDIEYMGFTSLDDESYDIMKHFEEVHKFIESA-KASGGKCFIHCMAGINRSGCLATAHVMLDQKMGPITAARFIFEKRGMLLSNSGFVERLVNFAVDREL 594
            +V   LYLGD + A N  +L+  GITH++N     +    T + + G  I Y+G  + D  ++D+  HF+    FI  A    GGK  +HC  G++RS  L  A++ML   +  + A + + + RG ++ N GF+ +L+  A+DR L
Sbjct:   64 EVWPGLYLGDQDMANNRRELRRLGITHVLNASHSRWRG--TPEAYEGLGIRYLGVEAHDSPAFDMSIHFQTAADFIHRALSQPGGKILVHCAVGVSRSATLVLAYLMLYHHLTLVEAIKKVKDHRG-IIPNRGFLRQLL--ALDRRL 205
The following BLAST results are available for this feature:
BLAST of TCONS_00016573 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
DUS262.019e-1933.33Dual specificity protein phosphatase 26 OS=Homo sa... [more]
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