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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00016535 ID=TCONS_00016535|Name=TCONS_00016535|organism=Clytia hemisphaerica|type=transcript|length=2542bp
CACCAAATCACTAAAAAAGCCGAAAATTAATTACCGTTCTATGCGTGTGA
AAGCCTTACGGCAACGTGCAAATGCTAACTGGTTGCTTGTTCGGTCAATG
CTTTCTGACATTGTTGATTTTGGTCGTGTCACAGGCCGAGTTTTTTCGCC
AATGAAATTCACAGCGTACAAACAACGATCCAGTCCAACTATCATGAAAT
TGAAACGCTTTCGGGCTAAGAAATTGCGAGCAAGGGCCAACTGGTTGTTA
GTTTCTTCAAGAGTAAAAGACATCGTGCGGTATCCAGACAAGTTACGCCG
TGAGCGAGTTACGTGGGACTCATACTTAGTCGAACTTAACATGAACCGTC
GAAAAGCGACACGTAATAAGTATGTGGCAGGAGTTTTACGAGCACGTGCT
AATTGGATGCTTGTACGTTCAAGAATCCCTGACATTATTCTGTACGGAAA
GTACCGACGGTATTCTAAGAAAGAACTCCCTGAATCTCGTCATGCCTCTC
CTGTTAAAACCAAAAGCAAACCTCTTAAAAGGAGCGAGAGTGATCGAGTA
CGTTCTCGGCGGACCGAAAAACCAATCGTCGGAACCGACAAATTGCAGCG
AAGTTCGACAAAGCACCGTAACAATGACGACGAAAAGCGTCGAAAACATC
ATCAGCATCGTTCGACCAAAATCAAATCGCCGCGGCACAGTCGTAAAGGA
GCCACCCAAATCGCTCTCGAAAACTGGAGTAAACTCGTCCAAAATACGCA
ACAAGCAGTCAAAAGAACGCCCTCTACGAAATCGAAATCAAATAAAGAGG
TTTATAAAAGTTGGGACGATTTGATTCAACGAACTTCCACTTCAGACAAG
AAGAAAAAGGTTCACCGCTCTTCTTCCACAAGACGAAAACAAAACGCCTT
GAACAACTGGGATAACCTCACCGCGCATACCAATACAAAAGACCAACAGA
AATCGAAAGAAGCTCTTGATAATTGGGATCAGCTTGTTAAAAAGACAAAA
GGAACTAATGTTCAACGTTCAACCTCATTGAAATCAAAAGGAGAAGCACC
GCATAAAAATTGGGATATTTTGATACAGAATACCTCTCGTGAGATCAAAC
AACGATCATCCCTACGATCAAAAGACGCGTTCATGAATTGGGATAATTTA
CTACGAAGcaaaaatacagaccagaagaAAAGCTTAGAAAACTGGGATCA
TCTTATTGTGGGCACTTCAACTTTATCTTCGCCGCGTCGTGCTAAGAGTG
TTGAAAGGCTCTCTCGCAGGTCACAATCTGAGCAGCATTGGCATGACTTG
TTTGACTCCGCCAAACGTGAAAAGAGGGATGCAGACGGAAACTGGCATCG
GTTGACAGGTAATGCACATTATGAAAAAGAAGCTGCTGACCGCAACTGGG
GTCATCTTGTACATTCTACAAAAACTCCTCCCAAGTCATCAAATCGTGCA
AAGAAAGGTTGGGATAAAATCAGGACCAGTCTTGGACGAAATTTGACTCA
TAAAGCGGATAAAGGACAACCTGTGATGAGTCAAGCACAAGAAGATCGCG
CCTACAAAAATTGGTGGACTTTGATCTCGACAGATGAAGATTCGAAAAGA
CCGGCAGCCAAAGAAGATATCAGAGACAAAGCTGCACGGACACGTCAGAT
GTTGAGAGAACGAACAAAAAAGCGCTGGAAGATTGGTACCAACTTATATC
AAGAACCGAGGTGGAATCTGTCAACAAAGATGAAGCCATAAACAACTGGC
ATAACTTGATTCGGATGGTAAGCACAACTAACGAAGAAGCAGAACAGAAT
TGGCACCAACTGATCCAATCTGTTCAACCGACAGCTGACATGTCTACGGA
AGCCGAAAATCATTGGCATAATTTGATCAAAGCTAAGAAAACGGGACCAA
TGTATAACTCAGAAAAGGCGCTTTATCATTGGGATAAATTAATTGAAGGG
CGCATTATTCGACGTACAGCTTCACAAACGCCCTCTTCCTCAATGAGCAC
CCGTGATGGAGTGATGGACAGCTTACGTAAACATCCTTCCAAAGACGGTA
CCTTTAAAAAGGTATCAGACACTCCTCCGTCTGGCTTCCGTTTATTATAC
GACAAAAACCAAGCACAATCTACCGGAAACCACGAACCAAAAGTCATGCG
CTTGAACATCAGAAATGATTTCGGACAATTCAATGACGTCAGACTTAAGA
TGACGTCACCGAACAAAAGCATGCTTTCTGCGCATCTGAAGGAGAACACT
GATGGAACTTTTACGATTTTCTGTTGTCCGAGTATTGATGAACCTTTCAA
TATTTGTGTCTCACTCGGCGGCTCACAGTTTGAGAACGATGTCCAAGTAT
TAACTTTAAAAGGAGATCTTTCCCTCCTCAAGACTCAAGTTGCAACTAGA
CTAGCATGCAAGACGATCAGTTTGATTCGTTGGCACTTAACTCCCGGTTT
ACTTTCAAAACAAGGGGAGAAAATCGTGGCTGGGAAATAGGTTATTTGAT
AAGatttcatattatttttggatttttatgtACATACTAGTA Run BLAST on NCBI transcript from alignment at sc0000241:234240..237176+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00016535 ID=TCONS_00016535|Name=TCONS_00016535|organism=Clytia hemisphaerica|type=transcript|length=2937bp|location=Sequence derived from alignment at sc0000241:234240..237176+ (Clytia hemisphaerica)
CACCAAATCACTAAAAAAGCCGAAAATTAATTACCGTTCTATGCGTGTGA
AAGCCTTACGGCAACGTGCAAATGCTAACTGGTTGCTTGTTCGGTCAATG
CTTTCTGACATTGTTGATTTTGGTCGTGTCACAGGCCGAGTTTTTTCGCC
AATGAAATTCACAGCGTACAAACAACGATCCAGTCCAACTATCATGAAAT
TGAAACGCTTTCGGGCTAAGAAATTGCGAGCAAGGGCCAACTGGTTGTTA
GTTTCTTCAAGAGTAAAAGACATCGTGCGGTATCCAGACAAGTTACGCCG
TGAGCGAGTTACGTGGGACTCATACTTAGTCGAACTTAACATGAACCGTC
GAAAAGCGACACGTAATAAGTATGTGGCAGGAGTTTTACGAGCACGTGCT
AATTGGATGCTTGTACGTTCAAGAATCCCTGACATTATTCTGTACGGAAA
GTACCGACGGTATTCTAAGAAAGAACTCCCTGAATCTCGTCATGCCTCTC
CTGTTAAAACCAAAAGCAAACCTCTTAAAAGGAGCGAGAGTGATCGAGTA
CGTTCTCGGCGGACCGAAAAACCAATCGTCGGAACCGACAAATTGCAGCG
AAGTTCGACAAAGCACCGTAACAATGACGACGAAAAGCGTCGAAAACATC
ATCAGCATCGTTCGACCAAAATCAAATCGCCGCGGCACAGTCGTAAAGGA
GCCACCCAAATCGCTCTCGAAAACTGGAGTAAACTCGTCCAAAATACGCA
ACAAGCAGTCAAAAGAACGCCCTCTACGAAATCGAAATCAAATAAAGAGG
TTTATAAAAGTTGGGACGATTTGATTCAACGAACTTCCACTTCAGACAAG
AAGAAAAAGGTTCACCGCTCTTCTTCCACAAGACGAAAACAAAACGCCTT
GAACAACTGGGATAACCTCACCGCGCATACCAATACAAAAGACCAACAGA
AATCGAAAGAAGCTCTTGATAATTGGGATCAGCTTGTTAAAAAGACAAAA
GGAACTAATGTTCAACGTTCAACCTCATTGAAATCAAAAGGAGAAGCACC
GCATAAAAATTGGGATATTTTGATACAGAATACCTCTCGTGAGATCAAAC
AACGATCATCCCTACGATCAAAAGACGCGTTCATGAATTGGGATAATTTA
CTACGAAGcaaaaatacagaccagaagaAAAGCTTAGAAAACTGGGATCA
TCTTATTGTGGGCACTTCAACTTTATCTTCGCCGCGTCGTGCTAAGAGTG
TTGAAAGGCTCTCTCGCAGGTCACAATCTGAGCAGCATTGGCATGACTTG
TTTGACTCCGCCAAACGTGAAAAGAGGGATGCAGACGGAAACTGGCATCG
GTTGACAGGTAATGCACATTATGAAAAAGAAGCTGCTGACCGCAACTGGG
GTCATCTTGTACATTCTACAAAAACTCCTCCCAAGTCATCAAATCGTGCA
AAGAAAGGTTGGGATAAAATCAGGACCAGTCTTGGACGAAATTTGACTCA
TAAAGCGGATAAAGGACAACCTGTGATGAGTCAAGCACAAGAAGATCGCG
CCTACAAAAATTGGTGGACTTTGATCTCGACAGATGAAGATTCGAAAAGA
CCGGCAGCCAAAGAAGATATCAGAGACAAAGCTGTATGTAAAACTACTGA
AGATCTTGTTTGCACTTCTCAGGCTAACGACACAGAGGCTACTGCTTGTC
AAAATTGGAATTCTTTAATCAAAGGTACATTAAATGTAAAGAAAGTTCGG
ATGAGAAACAAACTTGAGAAATAGGATCAATACAATCTGCTTTTTTTTAA
GTTATCTTGACAGCTTGTAGCTTTTCCgaactttcttttttgatatTAAA
TCATCCGAATAATTTTTACACTTGATGTCCTAATTTTGATGTGttcgcaa
aaattttaaatcgcTTTCTATCTTAGTTCTTTTACCTATTGCTAAATTGA
ATAGTTCATCCTTCGCTGACAATATCTTAAGTAAAAATTTCTCACAAGAC
TTtgtgtttttctttctcttcgTCACAGGCACGGACACGTCAGATGTTGA
GAGAACGAACAAAAAAGCGCTGGAAGATTGGTACCAACTTATATCAAGAA
CCGAGGTGGAATCTGTCAACAAAGATGAAGCCATAAACAACTGGCATAAC
TTGATTCGGATGGTAAGCACAACTAACGAAGAAGCAGAACAGAATTGGCA
CCAACTGATCCAATCTGTTCAACCGACAGCTGACATGTCTACGGAAGCCG
AAAATCATTGGCATAATTTGATCAAAGCTAAGAAAACGGGACCAATGTAT
AACTCAGAAAAGGCGCTTTATCATTGGGATAAATTAATTGAAGGGCGCAT
TATTCGACGTACAGCTTCACAAACGCCCTCTTCCTCAATGAGCACCCGTG
ATGGAGTGATGGACAGCTTACGTAAACATCCTTCCAAAGACGGTACCTTT
AAAAAGGTATCAGACACTCCTCCGTCTGGCTTCCGTTTATTATACGACAA
AAACCAAGCACAATCTACCGGAAACCACGAACCAAAAGTCATGCGCTTGA
ACATCAGAAATGATTTCGGACAATTCAATGACGTCAGACTTAAGATGACG
TCACCGAACAAAAGCATGCTTTCTGCGCATCTGAAGGAGAACACTGATGG
AACTTTTACGATTTTCTGTTGTCCGAGTATTGATGAACCTTTCAATATTT
GTGTCTCACTCGGCGGCTCACAGTTTGAGAACGATGTCCAAGTATTAACT
TTAAAAGGAGATCTTTCCCTCCTCAAGACTCAAGTTGCAACTAGACTAGC
ATGCAAGACGATCAGTTTGATTCGTTGGCACTTAACTCCCGGTTTACTTT
CAAAACAAGGGGAGAAAATCGTGGCTGGGAAATAGGTTATTTGATAAGat
ttcatattatttttggatttttatgtACATACTAGTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00016535-exon-sc0000241-1491911889:234240..235872 | TCONS_00016535-exon-sc0000241-1491911889:234240..235872 | Clytia hemisphaerica | exon |
| TCONS_00016535-exon-sc0000241-1510915933:234240..235872 | TCONS_00016535-exon-sc0000241-1510915933:234240..235872 | Clytia hemisphaerica | exon |
| TCONS_00016535-exon-sc0000241-1575043694:234240..235872 | TCONS_00016535-exon-sc0000241-1575043694:234240..235872 | Clytia hemisphaerica | exon |
| TCONS_00016535-exon-sc0000241-1491911889:236268..237176 | TCONS_00016535-exon-sc0000241-1491911889:236268..237176 | Clytia hemisphaerica | exon |
| TCONS_00016535-exon-sc0000241-1510915933:236268..237176 | TCONS_00016535-exon-sc0000241-1510915933:236268..237176 | Clytia hemisphaerica | exon |
| TCONS_00016535-exon-sc0000241-1575043694:236268..237176 | TCONS_00016535-exon-sc0000241-1575043694:236268..237176 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000241 | supercontig | sc0000241:234240..237176 + |
Blast
The following BLAST results are available for this feature:
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