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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00016525 ID=TCONS_00016525|Name=TCONS_00016525|organism=Clytia hemisphaerica|type=transcript|length=1785bpRun BLAST on NCBI protein sequence of TCONS_00016525-protein >TCONS_00016525-protein ID=TCONS_00016525-protein|Name=TCONS_00016525-protein|organism=Clytia hemisphaerica|type=polypeptide|length=480bp MGPKKKGGKKSAKAKAPTIVDGISTEEMTKEQLEEYIVRLREELDREREERun BLAST on NCBI transcript from alignment at sc0000241:112673..118762+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00016525 ID=TCONS_00016525|Name=TCONS_00016525|organism=Clytia hemisphaerica|type=transcript|length=6090bp|location=Sequence derived from alignment at sc0000241:112673..118762+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000241:112673..118762+ >TCONS_00016525 ID=TCONS_00016525|Name=TCONS_00016525|organism=Clytia hemisphaerica|type=CDS|length=18759bp|location=Sequence derived from alignment at sc0000241:112673..118762+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00016525 vs. Swiss-Prot (Human)
Match: GAS8 (Growth arrest-specific protein 8 OS=Homo sapiens GN=GAS8 PE=1 SV=1) HSP 1 Score: 560.836 bits (1444), Expect = 0.000e+0 Identity = 330/462 (71.43%), Postives = 400/462 (86.58%), Query Frame = 3
Query: 111 IVDGISTEEMTKEQLEEYIVXXXXXXXXXXXXXNYFQLERDKVNTFWEITKRQYEERKADLXXXXXXXXXXXXXXXXXIKVYKQKVKHLLYEHQNNITELKAENAVALKLAQDDYNDNESELRKDKRNLKVELKEQELSNEDLLKTLIRKKDEQITALRNDFERQAKEIESKYXXXXXXXXXXXXXXXXTEIHEVEERKNSQINTLMKNHEKAFSDIKNYYNDITLNNLALINSLKEQVXXXXXXXXXXXXQMNEVMTENRRLIEPLQKAKEEVQELQKQLANYEKDKASLQSAKARLRVQEQELGKLQWEHEVLRQRFEQTQNERDELYNKFVTAIHEVQQKSNFKNLLLEKKLGALADTLEKKEAQLNEVLSASNLDPTALTVVTRKLEDVLDSKNSAIKDLQYELARVCKAHNDLIRTYEAKFRSFGVPTEELGFKPLQSNVTGQQLGKGAAGLVAQPT 1496
IVDG++ E+M+KEQ+EE++ R+REELDREREERNYFQLERDK++TFWEIT+RQ EE+KA+LRNK+REMEEAEERHQVEIKVYKQKVKHLLYEHQNN+TE+KAE V +KLAQ ++ ES LRKD R LKVELKEQEL++E ++K L K E+IT +RNDFERQ +EIE+KY++KM+MLRDEL+LRRKTE+HEVEERKN QI+TLM+ HE+AF+DIKNYYNDITLNNLALINSLKEQ+E+MRKKE+ LE++M EV +N+RL +PLQKA+EE+ E+QKQLANYE+DK L KARL+V+E+EL LQWEHEVL QRF + Q ERDELY KF AI EVQQK+ FKNL+LE+KL AL+ +EKKE Q NEVL+ASNLDP ALT+V+RKLEDVL+SKNS IKDLQYELA+VCKAHNDL+RTYEAK +FG+P + +GFKPL++ V GQ LG+G AGLV PT
Sbjct: 17 IVDGLAPEDMSKEQVEEHVSRIREELDREREERNYFQLERDKIHTFWEITRRQLEEKKAELRNKDREMEEAEERHQVEIKVYKQKVKHLLYEHQNNLTEMKAEGTVVMKLAQKEHRIQESVLRKDMRALKVELKEQELASEVVVKNLRLKHTEEITRMRNDFERQVREIEAKYDKKMKMLRDELDLRRKTELHEVEERKNGQIHTLMQRHEEAFTDIKNYYNDITLNNLALINSLKEQMEDMRKKEDHLEREMAEVSGQNKRLADPLQKAREEMSEMQKQLANYERDKQILLCTKARLKVREKELKDLQWEHEVLEQRFTKVQQERDELYRKFTAAIQEVQQKTGFKNLVLERKLQALSAAVEKKEVQFNEVLAASNLDPAALTLVSRKLEDVLESKNSTIKDLQYELAQVCKAHNDLLRTYEAKLLAFGIPLDNVGFKPLETAVIGQTLGQGPAGLVGTPT 478 The following BLAST results are available for this feature:
BLAST of TCONS_00016525 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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