TCONS_00016524 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00016524
Unique Name	TCONS_00016524
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1785

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0000241:112673..118762+

transcript sequence

>TCONS_00016524 ID=TCONS_00016524|Name=TCONS_00016524|organism=Clytia hemisphaerica|type=transcript|length=1785bp
cagcaagaacaaacaaaaatatattataaattGAATACATTAAACACACA
TAAAAAATGGGGCCAAAGAAAAAAGGAGGGAAGAAATCTGCCAAAGCAAA
GGCACCCACAATCGTTGATGGAATCAGTACAGAAGAAATGACTAAAGAAC
AGCTTGAAGAATACATTGTAAGACTACGTGAGGAACTAGACAGAGAACGT
GAGGAAAGGAATTATTTTCAACTGGAACGTGACAAGGTCAATACATTTTG
GGAAATCACCAAGAGACAGTATGAGGAACGGAAAGCAGATCTACGGAACA
AAGAACGTGAAATGGAAGAAGCTGAGGAGAGACATCAAGTGGAAATCAAA
GTTTATAAACAAAAAGTCAAACATCTTCTCTATgaacatcaaaataatat
tacaGAACTAAAAGCAGAGAATGCTGTTGCATTGAAGTTAGCACAAGATG
ATTACAATGACAACGAATCAGAACTTCGAAAAGATAAACGAAATCTTAAA
GTGGAACTCAAAGAACAAGAACTTTCAAATGAAGATCTATTAAAAACACT
AATTAGGAAAAAAGATGAACAGATCACAGCGTTACGTAATGATTTCGAAC
GACAAGCAAAAGAAATCGAATCAAAATACGAGCGTAAAATGCGTATGTTA
CGTGACGAACTGGAATTACGACGTAAGACGGAGATTCACGAGGTTGAAGA
ACGTAAGAACAGTCAGATCAACACGTTGATGAAGAACCACGAGAAGGCAT
TCAGTGATATCAAGAACTATTATAATGACATCACACTCAATAATCTGGCA
CTTATTAACTCGCTGAAGGAACAAGTAGAAGAGATGCGTAAGAAGGAAGA
GCGTTTAGAGAAGCAAATGAACGAAGTGATGACTGAGAATCGACGCCTCA
TTGAACCTCTTCAAAAAGCTAAAGAAGAAGTTCAAGAATTACAAAAACAG
CTCGCGAATTACGAAAAAGACAAAGCTTCATTACAAAGCGCCAAAGCAAG
ACTTCGCGTACAAGAACAAGAGCTCGGAAAATTACAATGGGAGCATGAAG
TTCTTCGACAACGTTTCGAACAAACACAGAACGAACGTGATGAATTATAT
AATAAATTCGTGACCGCCATACATGAAGTGCAACAGAAGAGTAACTTCAA
AAATTTGTTGTTGGAAAAGAAATTGGGTGCTCTTGCTGATACCCTTGAGA
AGAAGGAAGCACAATTGAATGAAGTATTATCAGCATCCAATCTCGATCCA
ACTGCATTGACAGTCGTCACTAGAAAACTCGAGGATGTATTGGACTCGAA
GAACAGCGCCATTAAAGATCTTCAATATGAACTTGCTCGTGTTTGCAAGG
CTCACAACGATTTAATTCGAACGTACGAAGCAAAATTCCGTTCGTTTGGT
GTTCCCACAGAAGAACTCGGTTTCAAACCCCTTCAAAGCAATGTCACTGG
GCAACAACTTGGTAAAGGCGCTGCTGGATTGGTCGCTCAACCAACTTAAC
AAATTAGTACCCAAACTCCCTTATTTTGTAAGAAACAGGTATATatgtaa
tttattttattattttttaactgCTTGCTTGAACTATTATGTAAATTTAA
AAGAGCTAAGGAGATTGTATATACgtaacttgatttttttggaactGATC
AATATTATTTTAGTAATGCCAACAAACTTCAATTTTTGTTAATTCCTTTT
TTAAAAACCATTCGTTTAACAGCTCTCTGTGTGCATAATTGTAGGGATGG
TTGGAATAAGCAAGGGGGTGGATTGGTACTTTGGG

Run BLAST on NCBI

transcript from alignment at sc0000241:112673..118762+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00016524 ID=TCONS_00016524|Name=TCONS_00016524|organism=Clytia hemisphaerica|type=transcript|length=6090bp|location=Sequence derived from alignment at sc0000241:112673..118762+ (Clytia hemisphaerica)
cagcaagaacaaacaaaaatatattataaattGAATACATTAAACACACA
TAAAAAATGGTAAGTTTACGTACAAATTTCAGTTTCTGGGTCATTCCACg
aatttcttttctttggtcaaggttttttgacatttaaaaTTCCAGGCTCG
ATAAGTACGCTTTTGATTTAACTTGTTGGCATCACAATTTTGAGGGAAAA
AGGTAGCACTCTATGTACATTGTGTTGGTAAGAAGGATTCCATAAACCTG
GTCAACTATCGTGGCAAAATATCTTTATTGCTGAATAAATGAAGCAATCC
AATGGTTTCGTTCACAAGTAATGTATGTTATGAGTTGTAACTCTCCAATT
CTTTCTTCTTAAAAATTCTTTCAGGGGCCAAAGAAAAAAGGAGGGAAGAA
ATCTGCCAAAGCAAAGGCACCCACAATCGTTGATGGAATCAGTACAGAAG
AAATGACTAAAGAACAGGTTTGTTATAAAAGAATTTAAGATGgaacaaat
tttgacaaaaatatttgtttagaacaAAAAGAGAACTCCTGTTACAATAA
TACAGTTGTTTGTGGGATAAAGATTATAGAAACTGAACCTCTACAGGATC
TTTGTAAAAACTCCCTTCTTTGTCAAATTTAGCTAAAAAGAACTATCTGC
TGGTGTCCAAATGCAATAGTAAGGTTTTATCATGTTTGATCATTTCTTAA
CAGCTTGAAGAATACATTGTAAGACTACGTGAGGAACTGGACAGAGAACG
TGANGATCATTTCTTAACAGCTTGAAGAATACATTGTAAGACTACGTGAG
GAACTAGACAGAGAACGTGAGGAAAGGAATTATTTTCAACTGGAACGTGA
CAAGGTCAATACATTTTGGGAAATCACCAAGAGACAGTATGAGGAACGGA
AAGCAGATCTACGGAACAAAGAACGTGAAATGGAAGAAGCTGAGGAGAGA
CATCAAGTGGAAATCAAAGTTTATAAACAAAAAGTCAAACATCTTCTCTA
TgaacatcaaaataatattacaGAACTAAAAGCAGAGAGTATGTTATATT
AACTTTTGTTTGGTAGAGTCACTATGTTCCCACCATGCATAGTGTGTAGA
GAGTTAAGAACCTCCCCCTatgtttatttcatccccaatACCCATCTTCC
CCTCtgtaatgaaatcttttttacaaaaaatccgTCTcgaaggaaaattt
ttctatgTACTACCAAAATGGTGAAAAAGTACAAAGTAATGAAGTCACGA
GCCAACAATTTCACAAAATGACAAGCGTTTTTATATTAACAACCGTGAAC
ATAAACAGACCGTGACCATTTTTATATGATTGAATTAACCAAATTTCCAA
AcctaatttttttaaccttgatCTCCCCCTACATTCCCACCTCCCCCAAA
AGTCTTTTTGGCAAATCTTGGTACCCCCAGAAAGGCCTCCAAAAAGTTGG
CATCCCTCTATTAAAAAGGTGGTATAAACTATCCCATGGTTACCGTTATC
GAGTATATTTTCTGCGTTGCTTGTAGTAAACTACCTTGAGTTGactttgt
attttaaagacCCACTTTTTATGGGTAAATATCATTTAAAAACAGGATTT
ATTGCAAGTTCTtaccaaggacacttgtatagcgctatacaagtgtcctt
gttcttacagtagagtctctttaactcgaagtTTTACAAGTTGAATACCT
CctaaactcgaacaagttttatggtccctccAGTTAACAATGTTTCATTA
GTCTTACTCCATTACTGGAACagatttgtgttccccgtgagtgttcgagt
tatgaaaacTCCGtgagtgttcgagttatgaaaacTCCGtgagtgttcga
gttatgaagactctAATGTATATATTTATTCGTTTTCTATTAAGATGCTG
TTGCATTGAAGTTAGCACAAGATGATTACAATGACAACGAATCAGAACTT
CGAAAAGATAAACGAAATCTTAAAGTGGAACTCAAAGAACAAGAACTTTC
AAATGAAGATCTATTAAAAACACTAATTAGGGtttgtattttgaaaattc
tgatgTTTTTAATGTATTGGTTTAAATGTTATTAGTTTCGAACTGTCTCT
TATCCAATAGTCAAACTTGGTCAATAATTGACATGATTCTTTGGTTTTCT
TGTTTCCCTTGTAATAATAAGTTATGTATTTCGGGATATTTTTATCTTGA
GAAACTTCCAACTTAAGGTATTTCCCTACGTCTACCAACCTGTAGGTATC
AAGTAGTCTATTGACAAATGACTTACACAATGCATATTTTGATTGTTGAA
TTGTTTAGAAAAAAGATGAACAGATCACAGCGTTACGTAATGATTTCGAA
CGACAAGCAAAAGGtattcaatgttttctttcGTTACAAGTTGAAAAACT
AGGAAAAGATGTATTTTTGCAGCTAGTTATTTAAATCTCTTAACTTTCAG
ATCTTTTGTAGATAACAAAAGCCTGGGTAAAAGCCTCACATCTCAGATAT
CCTCTTGCACAAGCTCGTCATTTCCATTTGGTAATACAGTATTTATAAGC
TAACTGCTACTTTTAAGGCAACCTTATGAAAGTGCAAAGTTAGTAAGTGT
CTTTTACACATGGTTTTTCCACTTTCAACAATATTTACACGGCTCATTTT
ATTCATTTCGTCTGCCAGAAATCGAATCAAAATACGAGCGTAAAATGCGT
ATGTTACGTGACGAACTGGAATTACGACGTAAGACGGAGATTCACGAGGT
TGAAGAACGTAAGAACAGTCAGATCAACACGTTGATGAAGAACCACGAGA
AGGCATTCAGTGATATCAAGAACTATTATAATGACATCACACTCAATAAT
CTGGCACTTATTAACTCGCTGAAGGTAAATAAATAGGATCTTATCTACAA
TCGGCANGATCAACACGTTGATGAAGAACCACGAGAAGGCATTCAGTGAT
ATCAAGAACTATTATAATGACATCACACTCAATAATCTGGCACTTATTAA
CTCGCTGAAGGTAAATAAATAATCTACAATCGGCACCCAAATATTtagca
caaaaggggaattccctcaaaactttaaaacggCAAGTGATtattaagtg
ctttaaagtacggtCAGAAAGTAGagtttaactctgagttttaacattag
acttaaggtTTACGACCTTAgaatctcaggatctaaaagctcaaaaatgt
ttcaatatgaCTGAGAACATAggctggaagccacttaacccctcccaaat
caaaaaattccctGAAACAAAGTACTGAAATTGTAATTATTGCCCGAGCA
CTGATTGTAGAGCGATTGTCCTGGTTCCTCAAAACGATTAAATGTGATGC
TAGCTAGTACCTTCTTGGACATAATAATCCTCTCGGTACTTCATGTGTTA
CTGAGAACTCATGTTTGCTTTTGAAAAGCTTGAATTCTCCACACTGAGTA
ttatcttaaggaaaaggtttACATCAAGAGAAGCTTACTTTTAGAGTctg
gcaaatctttaaaaatcaaaatgtaagCATCATATCATGTATAACATTTT
CACACCTTTtgaattacacattttttttatagatgtccaaaaatttttga
agtcttcggatgCTCTTTTTGAGTCATTTTGTGATATTGTTGTGCAACTT
CATAAGGAATGTGTGTTTTAGAGTTCGCGAAACCTTAaaattattcttaa
cattttggccaccgaagccTTGTATCCTTATACAGGTTGCTcttgtaaaa
ataaaacgtcTATTATGGTCTTTTTTCTGATCTTGTCTCTTACCTTTCGA
TACACAGGAACAAGTAGAAGAGATGCGTAAGAAGGAAGAGCGTTTAGAGA
AGCAAATGAACGAAGTGATGACTGAGAATCGACGCCTCATTGAACCTCTT
CAAAAAGCTAAAGAAGAAGTTCAAGAATTACAAAAACAGGTATCCGGGTT
TTTAGCAAATATCTTAGTGAAGGATAAagatattttggaaaatttcggAA
CACTAGCTTATTACACAACTAGATATGTcgaatttctaaactttttggcT
TATGATATTACAGTAATATGAGTCACAGCAAAAAGTTTAATGTGACATCC
TTGCCGAAATAATTTAAATGAAGCTTTGAATATATTATCATTGTGTTTCA
GCTCGCGAATTACGAAAAAGACAAAGCTTCATTACAAAGCGCCAAAGCAA
GACTTCGCGTACAAGAACAAGAGCTCGGAAAATTACAATGGGAGCATGAA
GTTCTTCGACAACGTTTCGAACAAACACAGAACGAACGTGATGAATTATA
TAATAAATTCGTGACCGCCATACATGAAGTGCAACAGAAGAGTAACTTCA
AAAATTTGTTGTTGGAAAAGAAATTGGGTGCTCTTGCTGATACCCTTGAG
AAGAAGGTATGCGGTTTGTTTTTGTCTTTCAGAGATTCGAAAAGTCGTAA
GCACAATATACTCGGAAcagttcattttttgaaaagcgtTATGCATCAGT
TTTCAGTAAagtttttacatttctttttattatttaattatttgcTTTTG
CTTATAAAATTTTCTTAGAGCCTGAGCAGGCCTCCCACACTGCACTATAT
TCTTTAAATGCTTTTATCTTTAAAGTAAATTTTTATGTCTAGCCTAAAAG
ATGCCACGGTATTTTTAGTCCCCTTATCATTTCAATGCCGGAAGACATTC
TACCAATTCATTTTAACCATTTGCGTTCTTAGGAAGCACAATTGAATGAA
GTATTATCAGCATCCAATCTCGATCCAACTGCATTGACAGTCGTCACTAG
AAAACTCGAGGTAAGTGGTTCGCGAAGGTATAGTCATTTTTCTATCGTTT
TTTATGTGTCATAATTTATGCTAATTAAGGTAAACTGCACGACAgtgctt
tcaaaaaatagttaAAATAGTCTTTTGAACCTCCTTGggataataaaatt
ttacattttaattttttttttcttttatttatcatCCGATTCCTTTGTGG
CCGGCTCAGTCGGTAGCATTCAATCTCCCAGGACTTGCTCcaataaaaaa
gggaatagaCTCTCTCTCTGCCGGTAGCCACTACatgcagtagcgtagac
aagaggggccAAAAATTTGTgttggagagcagatttttataacacagtaa
ttatctttttatattatgaatagataattgctgtatcataaaaatctgct
ctcctacacaaatgtTGCGCCCTTGTCTACGCTGCTGGGATGCACTAGAT
GAATATATTTACTTTACTTTATCTTACTCTTGAGTTCTTCTTATTTAGGA
TGTATTGGACTCGAAGAACAGCGCCATTAAAGATCTTCAATATGAACTTG
CTCGTGTTTGCAAGGTAAGCTAAATTGTAACCCTTTTCGTATGGAATTTT
TAGGGGTATTTGTAATTATTGAGtggtcaaaaattaaaaataaagaatgt
ATATATGAAATAGGCTTTTCCTTTGGCCTTACTTTGCCAGAAAAACCCTA
ATTAATTAGGGATTTTAAGATTCTAAGATTGCAATTATTAGACTCTAAAG
TAGTATgatttttcatatgaaaaataTAAGTTAAGTGTATGGTTTGAAAG
CATTGACAGCGACTGTCGTTTGATTGATAACGAATGTTTTTTTCTACGTT
TTAGGCTCACAACGATTTAATTCGAACGTACGAAGCAAAATTCCGTTCGT
TTGGTGTTCCCACAGAAGAACTCGGTTTCAAACCCCTTCAAAGCAATGTC
ACTGGGCAACAACTTGGTAAAGGCGCTGCTGGATTGGTCGCTCAACCAAC
TTAACAAATTAGTACCCAAACTCCCTTATTTTGTAAGAAACAGGTATATa
tgtaatttattttattattttttaactgCTTGCTTGAACTATTATGTAAA
TTTAAAAGAGCTAAGGAGATTGTATATACgtaacttgatttttttggaac
tGATCAATATTATTTTAGTAATGCCAACAAACTTCAATTTTTGTTAATTC
CTTTTTTAAAAACCATTCGTTTAACAGCTCTCTGTGTGCATAATTGTAGG
GATGGTTGGAATAAGCAAGGGGGTGGATTGGTACTTTGGG

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_009235	XLOC_009235	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000241	supercontig	sc0000241:112673..118762 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
18.6469	17.7186	14.9559	13.9407	137.83	95.8694	30.72	28.8145	27.9648	26.0205	24.2908	25.1681	5.78824	5.44445	5.24288	5.97385	8.118	8.22404	9.32762	10.8068	7.01579	5.96784	13.1163	10.9872	85.4799	55.9635	13.4975	12.5337	5.6188	6.10417

Blast

[Close]

BLAST of TCONS_00016524 vs. Swiss-Prot (Human)
Match: GAS8 (Growth arrest-specific protein 8 OS=Homo sapiens GN=GAS8 PE=1 SV=1)

HSP 1 Score: 560.836 bits (1444), Expect = 0.000e+0
Identity = 330/462 (71.43%), Postives = 400/462 (86.58%), Query Frame = 3

Query:  111 IVDGISTEEMTKEQLEEYIVXXXXXXXXXXXXXNYFQLERDKVNTFWEITKRQYEERKADLXXXXXXXXXXXXXXXXXIKVYKQKVKHLLYEHQNNITELKAENAVALKLAQDDYNDNESELRKDKRNLKVELKEQELSNEDLLKTLIRKKDEQITALRNDFERQAKEIESKYXXXXXXXXXXXXXXXXTEIHEVEERKNSQINTLMKNHEKAFSDIKNYYNDITLNNLALINSLKEQVXXXXXXXXXXXXQMNEVMTENRRLIEPLQKAKEEVQELQKQLANYEKDKASLQSAKARLRVQEQELGKLQWEHEVLRQRFEQTQNERDELYNKFVTAIHEVQQKSNFKNLLLEKKLGALADTLEKKEAQLNEVLSASNLDPTALTVVTRKLEDVLDSKNSAIKDLQYELARVCKAHNDLIRTYEAKFRSFGVPTEELGFKPLQSNVTGQQLGKGAAGLVAQPT 1496
            IVDG++ E+M+KEQ+EE++ R+REELDREREERNYFQLERDK++TFWEIT+RQ EE+KA+LRNK+REMEEAEERHQVEIKVYKQKVKHLLYEHQNN+TE+KAE  V +KLAQ ++   ES LRKD R LKVELKEQEL++E ++K L  K  E+IT +RNDFERQ +EIE+KY++KM+MLRDEL+LRRKTE+HEVEERKN QI+TLM+ HE+AF+DIKNYYNDITLNNLALINSLKEQ+E+MRKKE+ LE++M EV  +N+RL +PLQKA+EE+ E+QKQLANYE+DK  L   KARL+V+E+EL  LQWEHEVL QRF + Q ERDELY KF  AI EVQQK+ FKNL+LE+KL AL+  +EKKE Q NEVL+ASNLDP ALT+V+RKLEDVL+SKNS IKDLQYELA+VCKAHNDL+RTYEAK  +FG+P + +GFKPL++ V GQ LG+G AGLV  PT
Sbjct:   17 IVDGLAPEDMSKEQVEEHVSRIREELDREREERNYFQLERDKIHTFWEITRRQLEEKKAELRNKDREMEEAEERHQVEIKVYKQKVKHLLYEHQNNLTEMKAEGTVVMKLAQKEHRIQESVLRKDMRALKVELKEQELASEVVVKNLRLKHTEEITRMRNDFERQVREIEAKYDKKMKMLRDELDLRRKTELHEVEERKNGQIHTLMQRHEEAFTDIKNYYNDITLNNLALINSLKEQMEDMRKKEDHLEREMAEVSGQNKRLADPLQKAREEMSEMQKQLANYERDKQILLCTKARLKVREKELKDLQWEHEVLEQRFTKVQQERDELYRKFTAAIQEVQQKTGFKNLVLERKLQALSAAVEKKEVQFNEVLAASNLDPAALTLVSRKLEDVLESKNSTIKDLQYELAQVCKAHNDLLRTYEAKLLAFGIPLDNVGFKPLETAVIGQTLGQGPAGLVGTPT 478

The following BLAST results are available for this feature:

BLAST of TCONS_00016524 vs. Swiss-Prot (Human)

BLAST of TCONS_00016524 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
GAS8	0.000e+0	71.43	Growth arrest-specific protein 8 OS=Homo sapiens G...	[more]

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TCONS_00016524 (transcript) - C. hemisphaerica