TCONS_00016521 (transcript) - C. hemisphaerica

Overview
NameTCONS_00016521
Unique NameTCONS_00016521
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1537

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00016521 ID=TCONS_00016521|Name=TCONS_00016521|organism=Clytia hemisphaerica|type=transcript|length=1537bp
GAGTCTTGTAAACTTAAACAAATAGAAAAAGTATAACTGACACAACTGGC
AGTTAGGAAAGTCTCAAATTTCATGCCTAAAGCCAAATAtgtaaaaagtc
aaaacaaaaaaggtaTATGACAGTCATATGATATCCAACTGGTCTGTACT
TTCGTTGTTAAAAAGTTGATTCGATATACATGCCATCACACAAACTATGT
ACTTTCTGAAAAAGATCTTTTAAGAGTTGTTGTTATATAATAATTGTATA
AAGTTTCAAATCAGAAGCACATGACCTCACGTTTGTCAAGTTTTGTCGGT
AAAACTGTTTTTGTAACAAAGATGGCGCATGACGAGAACTTTCTGACAGA
GAGTGAAGAGAACGACGATAGCTTGAACGAACCGGTAAAAAAGCGACAGA
AGAGTCGAATTCGGCGTCAAAGGGCCATGGATTCCAGCGAGGACGATGGC
TACTTTTGGGTCCACTCCGAAGCTGAAATCGTAAAGAATTACAAGCAAgt
gaaacatttgaaaatgtATGGAACACACGGTAAAAAACCCGGACAGTTTC
TCGATCCAATGGGTATCTCAACTATGGATGGTTTTGTATGTGTTACAGAT
CCAATGAAAAATTCGCTGACAGTTTTTAACGAGTCCACTATACGTAGCCA
ATCTAAAGGAGACATTATGATAGCAGCTGATATAAAGCCACTCAAAGAAT
GTTATTTTTCATCTGTTTTTGATGTAGCAGTACATGAATCCAGTAAAAAC
GTTCTGGTCAGTGATCCAGTCAAGAAATGTATACATTGCGTCTCCCTTGG
TGACGATATACGTAAAAATAACACCATCTTTGATTCGAATATCACGGTAT
CGAAGTGTGATACTTTATCTGGGATATGCGTAACACAGAACGGATTAATC
GGAGCATTAGATAGTGAATCAGGACGTGTGTTGGTATGCGACGGACATGG
CGACATAAAACATTCCTTCGGGAGTGAAGGATCTGATAAAGGACAGTTCT
GTCTTCCACAATTCATTCATTGGGATAACCTTAATCAACGCTTTATTGTT
TCAGATACTGCGAATGCGCGTGTCCAACTTTTCACAGCTGACGGACAGTT
CTTGTTTTCGTTTGGTGAATTCGGTTTTAAAGATGGCGGATGTTTTAAAT
ATCCATCTGGTATAACGACTGATGATCATGGACGTATTTTTGTGGTTGAC
CAAGGATTACACGAGGTGCAAATCTTTGATAAAGACGGTCACTGGTTGCA
CTCACTAGGAAAAGCAGGAATTATGCCAGGATGCTTCAACAGTCCGAAAT
CGTTGTCTTTGTTTTCGAATGGTGATTTAGTTGTAACGGATAGCTTGAAT
AGTCGGTTACAAGTGTTCGGTTGAAGGTTGCGGTGCTTTGAAtatgtttt
atcaaaaaatgaatttttacaCACAAATTTATTAATGAACGAAATACTTT
CTTATACACCTTTGTATTATTTAATTTACTGCGAcgctaaaaaagaaaat
aaattatttcaatGGATTTTAAGATATAATCAAAatc
Run BLAST on NCBI

protein sequence of TCONS_00016521-protein

>TCONS_00016521-protein ID=TCONS_00016521-protein|Name=TCONS_00016521-protein|organism=Clytia hemisphaerica|type=polypeptide|length=367bp
MTSRLSSFVGKTVFVTKMAHDENFLTESEENDDSLNEPVKKRQKSRIRRQ
RAMDSSEDDGYFWVHSEAEIVKNYKQVKHLKMYGTHGKKPGQFLDPMGIS
TMDGFVCVTDPMKNSLTVFNESTIRSQSKGDIMIAADIKPLKECYFSSVF
DVAVHESSKNVLVSDPVKKCIHCVSLGDDIRKNNTIFDSNITVSKCDTLS
GICVTQNGLIGALDSESGRVLVCDGHGDIKHSFGSEGSDKGQFCLPQFIH
WDNLNQRFIVSDTANARVQLFTADGQFLFSFGEFGFKDGGCFKYPSGITT
DDHGRIFVVDQGLHEVQIFDKDGHWLHSLGKAGIMPGCFNSPKSLSLFSN
GDLVVTDSLNSRLQVFG
Run BLAST on NCBI

transcript from alignment at sc0000241:82528..84249+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00016521 ID=TCONS_00016521|Name=TCONS_00016521|organism=Clytia hemisphaerica|type=transcript|length=1722bp|location=Sequence derived from alignment at sc0000241:82528..84249+ (Clytia hemisphaerica)
GAGTCTTGTAAACTTAAACAAATAGAAAAAGTATAACTGACACAACTGGC
AGTTAGGAAAGTCTCAAATTTCATGCCTAAAGCCAAATAtgtaaaaagtc
aaaacaaaaaaggtaTATGACAGTCATATGATATCCAACTGGTCTGTACT
TTCGTTGTTAAAAAGTTGATTCGATATACATGCCATCACACAAACTATGT
ACTTTCTGAAAAAGATCTTTTAAGAGTTGTTGTTATATAATAATTGTATA
AAGTTTCAAATCAGAAGCACATGACCTCACGTTTGTCAAGTTTTGTCGGT
AAAACTGTTTTTGTAACAAAGATGGCGCATGACGAGAACTTTCTGACAGA
GAGTGAAGAGAACGACGATAGCTTGAACGAACCGGTAACTTCAATCTACT
TGATTTTGAGCTTAGATAGAACCAGTTTAGAATGAAGTCGGAGataatag
atttaaaaaaagtttagatGACCGTCCATTTATTCATTGATAGCCAGTCA
GTTAACAAATCTTTTGAAAGCCTCCTCACTTTTTGAATTAAAACCTTTTT
ATCCACCTTTTCACTTCAGGTAAAAAAGCGACAGAAGAGTCGAATTCGGC
GTCAAAGGGCCATGGATTCCAGCGAGGACGATGGCTACTTTTGGGTCCAC
TCCGAAGCTGAAATCGTAAAGAATTACAAGCAAgtgaaacatttgaaaat
gtATGGAACACACGGTAAAAAACCCGGACAGTTTCTCGATCCAATGGGTA
TCTCAACTATGGATGGTTTTGTATGTGTTACAGATCCAATGAAAAATTCG
CTGACAGTTTTTAACGAGTCCACTATACGTAGCCAATCTAAAGGAGACAT
TATGATAGCAGCTGATATAAAGCCACTCAAAGAATGTTATTTTTCATCTG
TTTTTGATGTAGCAGTACATGAATCCAGTAAAAACGTTCTGGTCAGTGAT
CCAGTCAAGAAATGTATACATTGCGTCTCCCTTGGTGACGATATACGTAA
AAATAACACCATCTTTGATTCGAATATCACGGTATCGAAGTGTGATACTT
TATCTGGGATATGCGTAACACAGAACGGATTAATCGGAGCATTAGATAGT
GAATCAGGACGTGTGTTGGTATGCGACGGACATGGCGACATAAAACATTC
CTTCGGGAGTGAAGGATCTGATAAAGGACAGTTCTGTCTTCCACAATTCA
TTCATTGGGATAACCTTAATCAACGCTTTATTGTTTCAGATACTGCGAAT
GCGCGTGTCCAACTTTTCACAGCTGACGGACAGTTCTTGTTTTCGTTTGG
TGAATTCGGTTTTAAAGATGGCGGATGTTTTAAATATCCATCTGGTATAA
CGACTGATGATCATGGACGTATTTTTGTGGTTGACCAAGGATTACACGAG
GTGCAAATCTTTGATAAAGACGGTCACTGGTTGCACTCACTAGGAAAAGC
AGGAATTATGCCAGGATGCTTCAACAGTCCGAAATCGTTGTCTTTGTTTT
CGAATGGTGATTTAGTTGTAACGGATAGCTTGAATAGTCGGTTACAAGTG
TTCGGTTGAAGGTTGCGGTGCTTTGAAtatgttttatcaaaaaatgaatt
tttacaCACAAATTTATTAATGAACGAAATACTTTCTTATACACCTTTGT
ATTATTTAATTTACTGCGAcgctaaaaaagaaaataaattatttcaatGG
ATTTTAAGATATAATCAAAatc

Coding sequence (CDS) from alignment at sc0000241:82528..84249+

>TCONS_00016521 ID=TCONS_00016521|Name=TCONS_00016521|organism=Clytia hemisphaerica|type=CDS|length=2208bp|location=Sequence derived from alignment at sc0000241:82528..84249+ (Clytia hemisphaerica)
ATGACCTCACGTTTGTCAAGTTTTGTCGGTAAAACTGTTTTTGTAACAAA
GATGGCGCATGACGAGAACTTTCTGACAGAGAGTGAAGAGAACGACGATA
GCTTGAACGAACCGGTAAAAAAGCGACAGAAGAGTCGAATTCGGCGTCAA
AGGGCCATGGATTCCAGCGAGGACGATGGCTACTTTTGGGTCCACTCCGA
AGCTGAAATCGTAAAGAATTACAAGCAAgtgaaacatttgaaaatgtATG
GAACACACGGTAAAAAACCCGGACAGTTTCTCGATCCAATGGGTATCTCA
ACTATGGATGGTTTTGTATGTGTTACAGATCCAATGAAAAATTCGCTGAC
AGTTTTTAACGAGTCCACTATACGTAGCCAATCTAAAGGAGACATTATGA
TAGCAGCTGATATAAAGCCACTCAAAGAATGTTATTTTTCATCTGTTTTT
GATGTAGCAGTACATGAATCCAGTAAAAACGTTCTGGTCAGTGATCCAGT
CAAGAAATGTATACATTGCGTCTCCCTTGGTGACGATATACGTAAAAATA
ACACCATCTTTGATTCGAATATCACGGTATCGAAGTGTGATACTTTATCT
GGGATATGCGTAACACAGAACGGATTAATCGGAGCATTAGATAGTGAATC
AGGACGTGTGTTGGTATGCGACGGACATGGCGACATAAAACATTCCTTCG
GGAGTGAAGGATCTGATAAAGGACAGTTCTGTCTTCCACAATTCATTCAT
TGGGATAACCTTAATCAACGCTTTATTGTTTCAGATACTGCGAATGCGCG
TGTCCAACTTTTCACAGCTGACGGACAGTTCTTGTTTTCGTTTGGTGAAT
TCGGTTTTAAAGATGGCGGATGTTTTAAATATCCATCTGGTATAACGACT
GATGATCATGGACGTATTTTTGTGGTTGACCAAGGATTACACGAGGTGCA
AATCTTTGATAAAGACGGTCACTGGTTGCACTCACTAGGAAAAGCAGGAA
TTATGCCAGGATGCTTCAACAGTCCGAAATCGTTGTCTTTGTTTTCGAAT
GGTGATTTAGTTGTAACGGATAGCTTGAATAGTCGGTTACAAGTGTTCGG
TTGAATGACCTCACGTTTGTCAAGTTTTGTCGGTAAAACTGTTTTTGTAA
CAAAGATGGCGCATGACGAGAACTTTCTGACAGAGAGTGAAGAGAACGAC
GATAGCTTGAACGAACCGGTAAAAAAGCGACAGAAGAGTCGAATTCGGCG
TCAAAGGGCCATGGATTCCAGCGAGGACGATGGCTACTTTTGGGTCCACT
CCGAAGCTGAAATCGTAAAGAATTACAAGCAAgtgaaacatttgaaaatg
tATGGAACACACGGTAAAAAACCCGGACAGTTTCTCGATCCAATGGGTAT
CTCAACTATGGATGGTTTTGTATGTGTTACAGATCCAATGAAAAATTCGC
TGACAGTTTTTAACGAGTCCACTATACGTAGCCAATCTAAAGGAGACATT
ATGATAGCAGCTGATATAAAGCCACTCAAAGAATGTTATTTTTCATCTGT
TTTTGATGTAGCAGTACATGAATCCAGTAAAAACGTTCTGGTCAGTGATC
CAGTCAAGAAATGTATACATTGCGTCTCCCTTGGTGACGATATACGTAAA
AATAACACCATCTTTGATTCGAATATCACGGTATCGAAGTGTGATACTTT
ATCTGGGATATGCGTAACACAGAACGGATTAATCGGAGCATTAGATAGTG
AATCAGGACGTGTGTTGGTATGCGACGGACATGGCGACATAAAACATTCC
TTCGGGAGTGAAGGATCTGATAAAGGACAGTTCTGTCTTCCACAATTCAT
TCATTGGGATAACCTTAATCAACGCTTTATTGTTTCAGATACTGCGAATG
CGCGTGTCCAACTTTTCACAGCTGACGGACAGTTCTTGTTTTCGTTTGGT
GAATTCGGTTTTAAAGATGGCGGATGTTTTAAATATCCATCTGGTATAAC
GACTGATGATCATGGACGTATTTTTGTGGTTGACCAAGGATTACACGAGG
TGCAAATCTTTGATAAAGACGGTCACTGGTTGCACTCACTAGGAAAAGCA
GGAATTATGCCAGGATGCTTCAACAGTCCGAAATCGTTGTCTTTGTTTTC
GAATGGTGATTTAGTTGTAACGGATAGCTTGAATAGTCGGTTACAAGTGT
TCGGTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009234XLOC_009234Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00016521-proteinTCONS_00016521-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00016521-exon-sc0000241-1491911889:82528..82911TCONS_00016521-exon-sc0000241-1491911889:82528..82911Clytia hemisphaericaexon
TCONS_00016521-exon-sc0000241-1510915933:82528..82911TCONS_00016521-exon-sc0000241-1510915933:82528..82911Clytia hemisphaericaexon
TCONS_00016521-exon-sc0000241-1575043694:82528..82911TCONS_00016521-exon-sc0000241-1575043694:82528..82911Clytia hemisphaericaexon
TCONS_00016521-exon-sc0000241-1491911889:83097..84249TCONS_00016521-exon-sc0000241-1491911889:83097..84249Clytia hemisphaericaexon
TCONS_00016521-exon-sc0000241-1510915933:83097..84249TCONS_00016521-exon-sc0000241-1510915933:83097..84249Clytia hemisphaericaexon
TCONS_00016521-exon-sc0000241-1575043694:83097..84249TCONS_00016521-exon-sc0000241-1575043694:83097..84249Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000241supercontigsc0000241:82528..84249 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.77725	1.6507	1.50399	2.36536	4.33133	1.36087	2.1215	0.441314	3.25406	3.46442	2.17476	11.8541	4.44705	5.17967	11.9217	7.69303	0.89889	0.880887	8.03159	9.42479	3.0532	2.92168	2.11996	2.6039	0	0.363087	5.10198	7.14141	7.16945	7.27121
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR0110426-blade_b-propeller_TolB-like
IPR001258NHL_repeat
IPR013017NHL_repeat_subgr
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
Blast
[Close]
BLAST of TCONS_00016521 vs. Swiss-Prot (Human)
Match: LIN41 (E3 ubiquitin-protein ligase TRIM71 OS=Homo sapiens GN=TRIM71 PE=1 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 1.202e-24
Identity = 64/166 (38.55%), Postives = 90/166 (54.22%), Query Frame = 1 
Query:  871 GICVTQNGLIGALDSESGRVLVCDGHGDIKHSFGSEGSDKGQFCLPQFIHWDNLNQRFIVSDTANARVQLFTADGQFLFSFGEFGFKDGGCFKYPSGITTDDHGRIFVVDQGLHEVQIFDKDGHWLHSLGKAGIMPGCFNSPKSLSLFSNGDLVVTDSLNSRLQVF 1368
            G+ V + G I   D  + R+ V    G   H FG+ GS  GQF  P  +  D  ++R +V+D  N R+Q+FT +GQFL  FGE G K+G  F YP  +  +  G+I V D   H +Q+F  DG +L+  G  G +   F+SP+ ++    G LVVTD  N RL V 
Sbjct:  611 GVSVDKEGYIIVADRSNNRIQVFKPCGAFHHKFGTLGSRPGQFDRPAGVACDA-SRRIVVADKDNHRIQIFTFEGQFLLKFGEKGTKNGQ-FNYPWDVAVNSEGKILVSDTRNHRIQLFGPDGVFLNKYGFEGALWKHFDSPRGVAFNHEGHLVVTDFNNHRLLVI 774

HSP 2 Score: 95.5153 bits (236), Expect = 1.611e-20
Identity = 58/152 (38.16%), Postives = 82/152 (53.95%), Query Frame = 1 
Query:  916 ESGRVLVCDGHGDIKHSFGSEGSDKGQFCLPQFIHWDNLNQRFIVSDTANARVQLFTADGQFLFSFGEFGFKDGGCFKYPSGITTDDHGRIFVVDQGLHEVQIFDKDGHWLHSLGKAGIMPGCFNSPKSLSLFSNGDLVVTDSLNSRLQVFG 1371
            +SGR  V  G G    SFGSEG   G+ C P  +  D      IV+D +N R+Q+F   G F   FG  G + G  F  P+G+  D   RI V D+  H +QIF  +G +L   G+ G   G FN P  +++ S G ++V+D+ N R+Q+FG
Sbjct:  581 KSGRSYV--GIGLPGLSFGSEGDSDGKLCRPWGVSVDK-EGYIIVADRSNNRIQVFKPCGAFHHKFGTLGSRPGQ-FDRPAGVACDASRRIVVADKDNHRIQIFTFEGQFLLKFGEKGTKNGQFNYPWDVAVNSEGKILVSDTRNHRIQLFG 728

HSP 3 Score: 81.2629 bits (199), Expect = 4.176e-16
Identity = 73/238 (30.67%), Postives = 106/238 (44.54%), Query Frame = 1 
Query:  517 YGTHGKKPGQFLDPMGIST-MDGFVCVTDPMKNSLTVFNESTIRSQSKGDIMIAADIKPLKECYFSSVFDVAVHESSKNVLVSDPVKKCIHCVSLGDDIRKNNTIFDSNITVSKCDTLSGICVTQNGLIGALDSESGRVLVCDGHGDIKHSFGSEGSDKGQFCLPQFIHWDNLNQRFIVSDTANARVQLFTADGQFLFSFGEFGFKDGGCFKYPSGITTDDHGRIFVVDQGLHEVQIF 1227
            +GT G +PGQF  P G++      + V D   + + +F         +G  ++    K  K   F+  +DVAV+   K +LVSD     I      D +  N   F+  +     D+  G+     G +   D  + R+LV           GSEG+  GQF  PQ +  D    R IV+D+ N RVQ+F ++G FL  FG  G    G    PSGI     G I VVD G + + +F
Sbjct:  643 FGTLGSRPGQFDRPAGVACDASRRIVVADKDNHRIQIFT-------FEGQFLLKFGEKGTKNGQFNYPWDVAVNSEGK-ILVSDTRNHRIQLFG-PDGVFLNKYGFEGALW-KHFDSPRGVAFNHEGHLVVTDFNNHRLLVIHPDCQSARFLGSEGTGNGQFLRPQGVAVDQ-EGRIIVADSRNHRVQMFESNGSFLCKFGAQG-SGFGQMDRPSGIAITPDGMIVVVDFGNNRILVF 868
The following BLAST results are available for this feature:
BLAST of TCONS_00016521 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
LIN411.202e-2438.55E3 ubiquitin-protein ligase TRIM71 OS=Homo sapiens... [more]
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