TCONS_00016486 (transcript) - C. hemisphaerica

Overview
NameTCONS_00016486
Unique NameTCONS_00016486
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length726

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00016486 ID=TCONS_00016486|Name=TCONS_00016486|organism=Clytia hemisphaerica|type=transcript|length=726bp
AGATAAtactaaaaaaataaacaaacgaACATCGAAATGGCTGCTGGTGA
GGGTGAGATGCACACTGTAATGGAACCTTTAGATTTGATCAAATTCAGTC
TGGATGAGAAAGTATACGTCAAGATGCGCAACGATCGTGAATTGCGCGGT
AAATTACACGCGTACGATCAACATTTGAACATGGTGCTGGGTGATGTGGA
GGAGACGGTCACCACTGTCGAACTGGATGAAGAAAcaatggaagaaattt
tcaagCAATCAAAACGTTCGATTCCGATGTTATTCATTCGAGGTGACGGT
GTCATCCTGATTTCACCCTCTTTACGTGTCGGATTGTGAACATTCTGCGC
TCCTATTGGTTGGTTGTGTTATCCGGTCATAATGGCTGCCATGTTGAAGA
AGAAGACCTTTTTCATTGACACTGTATTACAAAAATAAAGGACAAACTTG
CTTTGTTGTGTTCGGTTGCTATGGAAGGTATGACCTTGGGAAtatcagtt
ttttttaatgttgaatttttgtacatatttttacTTATTGCTTTATTATC
TCAAAGGAAGAGAAAAATGATGAGACtcgaaatattttgcttcaaaattc
aAACTCGCTCTTGAATaactgaaataaaaagtaattgCTCTTGAAATTTC
GacttaaacaataaaattgttctttctttATTTGGCATTTATCGACAAAG
TATGACATAATGAGACACAAAGGTTT
Run BLAST on NCBI

protein sequence of TCONS_00016486-protein

>TCONS_00016486-protein ID=TCONS_00016486-protein|Name=TCONS_00016486-protein|organism=Clytia hemisphaerica|type=polypeptide|length=100bp
MAAGEGEMHTVMEPLDLIKFSLDEKVYVKMRNDRELRGKLHAYDQHLNMV
LGDVEETVTTVELDEETMEEIFKQSKRSIPMLFIRGDGVILISPSLRVGL
Run BLAST on NCBI

transcript from alignment at sc0000240:112952..121577-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00016486 ID=TCONS_00016486|Name=TCONS_00016486|organism=Clytia hemisphaerica|type=transcript|length=8626bp|location=Sequence derived from alignment at sc0000240:112952..121577- (Clytia hemisphaerica)
AGATAATACTAAAAAAATAAACAAACGAACATCGAAATGGCTGCTGGTGA
GGGTGAGATGCACACTGTAATGGAACCTTTAGATTTGATCAAATTCAGTC
TGGATGAGAAAGTATACGTCAAGATGCGCAACGATCGTGAATTGCGCGGT
AAATTACACGCGTACGATCAACATTTGAACATGGTGCTGGGTGATGTGGA
GGAGACGGTCACCACTGTCGAACTGGATGAAGAAACAATGGAAGAAATTT
TCAAGGTATTTCATTTATTCACATAATAATTCATAAGACTATATTGGGCA
TTGATGTCAGTTAGAATGTTGGGAAATGGTGAAAAAGGCATTTTCAGATA
ATTGATTATGAGATAAATTAGAAATCCGTCTACTCCTGGAACTGATGTGA
TGTGAACCATTACAATGAGTTATTCGGTTGTTTCTCGAAGAATTATCTTT
CCTCGAAAGTTTTCTTTTCGTCTAAAAAAATGCATTAAATTTGATTACTC
GATTTTTTTCTTTCCATGTTTGTCTGAGTTTCAAGGAAAGGATAATTGGC
CTTTAATTTCTTTGTTTTTGTGATGAATTTACCTTGCAATGACATCCGTT
GGTAACGCGAAAGGATCTTCCTCCTTGCTACGACGAGGCTGCGTTTTAAT
TAACTTTTTTCTTTAAAGTAGTGCACATTCGTGAATATTTTCGTTACAAC
AATTTCCTCAAACGCTGATAGATTTTCTTCTGTATACTTTATTATATCGG
ACTGCGTATTTCGAAATCAGTGGACTTGACTCACTTCAAATATATTTCCC
CTGCCAACATACATCTTCTCACGTTTTTGTGTTAGGTGGAAGCAAGTTTA
AGGGGCTGTATGGGTCACGAGTTAAGTGATATTTAGGTTGATTTTTATAG
AAAAAATTGATACTTTCATTTATTAGTAAAGTAGTAGTTGGCCCGAGGGA
GTACTAGTGTTGTGAGCTGGTATGGGTGTGCCGCTTGACTTTCGACTCTC
GAACCCTTAGCGGAACTAAACAGGAGGGGGGAGGAAAATTTTGTGACTTT
TACTACCCTTTTTGTGACTAATTCAACCAAATTTCTATTTTGTAAAGAAA
TCGCGATTGAATGTCGATCACCTCAAAAAAAAACGAACGTACACTGACGA
ACTTGACCCCCCCCCCCTTCAGAGATTTGGGGGTACCTAAAAAAAAGTGT
TAAAAGAGCCAGGTACCTGGAAGTATTCTTAAATTTAGGGGGTACCTGAT
ATGTTTGGGGGTACCTGCATTTTCATTAGTGGGGGTAGGGGCTGTTGTTT
TTGTATGAAGTCATCACCCTTGAATTCCTTGAAGCACTTGGAACACCCTT
GAAAAGTCAATATTATTTTGGGGACCTTTGAAATGCAAGATTTATACCCT
TGAAACCCTTGAAATGCCAAATTTTGTGGCCATTTTTAGCCGTTTTAACT
TTCAGAAATACAAAATTTTTCCCATTGCGTGGGATACAAACATCGCAGTG
ACTTAAAAATGAGAAAACATACTTTTGGAACCCCTGAGACTCNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGAGACTCAAG
GGGATATTCCACGCTCATTCTTAGGGGGTTTACCTTTTAACCCGTTAAGT
GCCACTGGAATTATATGAGATTGGCAGGGCTGGGGGATAGAATGGGTGGT
TGTAAAATTATCAATTATCAGCCAATTTAAGGGCCCTCCTTTACACAAAA
ATTGAAAATTCAACCGTTCTCCTTTTGTTGACAGATTTCCTTGAAATCTT
TGAAAACTAGCAAAGATCAACTAAAAATCCTTAGAAACCCTTGAAAGTTT
GTGGTATATAAAAATCTCTTGAAACCCTGGAAAATTATAGAAAAAAATTA
CACCCTTGAATTTGTTGAAAAAGAAGGCCGCCATGGAATTATTTTCCCAG
GAATGACAAAAGAGCAAAAAATCCCTTTTTGTATTTTTAACAATAAAAAA
ATTAAAAAGGGGGTAACTCAAAGTTGGGGGATTACTTTAGTTAGAATTCT
AAAAAAATTTGGGGGTACCAAAATGATTGGGGGTACCTGAATTTTTTGGG
TGTACCTGAACCCTGGAGGACCCTATGCCCGTTGTTTATCGTGCTATTTA
GACCAATTATGTTCAGCAAAATACAATTATCATTTTGATTACGCATCTAG
TTAACTTAAAATTAGTCGGCAAAAACATGTATAATTAATTACATAATTAC
AGAATTAATTAGAACTTGATTAATTATACATGCTGATTAATTCAAGCAAT
TATTGAAATAAAATCTTTTTCTAAACTCACTTACACAAAACTGAATTACT
TTTTGCAAACGTTATTTGAATTTGAATAGATGCGAGCAATGATTAGATTT
GATAATTTGACAAATTATTATATCTGACAATTACTGTTAAAAATACTCTA
GAATAGCATTCTTAGGTTCAATTTCCTAATCCCATGAATAATATTCTTAA
AGTCCTGTTTCAATATAATTTGCAGCGGAGACGAAAAAAACTTTTGATAG
AATTCTAATTAGATAGCAGTTCTGTGCTCGTTAAAAGATATTTTGGAGTG
GAATATTGTCAAAAAGAAAAAGATTTAAAAAATGGAAAAGTTATGATGAA
AAATGAAGAAGAAAATGAACTTCTTATAGAATAATGGGCTCTTCCAGAAA
AAAAATTTACATGGGGGGGTGGAGGATATATTGTCCGGGGGTAGCAAAAA
AACATCAAAATTTGCCTTGTCCGGCGTGTAAATTTGCTCTGTCCGGGGGT
AATTTGGTGTGCCCCGGGGTCAGCAGATGCTTGCCCGGGGGGTAAAACCT
ATTGTCCGGGGGGGGCCAAAAGTCACCCTCTCCGGGGGGGGGGGGAAACC
GCACCCTCGGGGGGGGGGGGGGAAACCGCACCCTCGGGGGGGGGGGGGGA
AACCGCACCCTCGGGGGGGGGGGGGGAAACCGCACCCTCGGGGGGGGGGG
GGGAAACCGCACCCTCGGGGGGGGGGGGGGAAACCGCACCCTCGGGGGGG
GGGGGGGAAACCGCACCCTCGGGGGGGGGGGGGGAAACCGCACCCTCGGG
GGGGGGGGGGGAAACCGCACCCTCGGGGGGGGGGGGGGAAACCGCACCCT
CGGGGGGGGGGGGGGAAACCGCACCCTCGGGGGGGGGGGGGGAAACCGCA
CCCTCGGGGGGGGGGGGGGAAACCGCACCCTCGGGGGGGGGGGGGGAAAC
CGCACCCTCGGGGGGGGGGGGGGAAACCGCACCCTCGGGGGGGGGGGGGG
AAACCGCACCCTCGGGGGGGGGGGGGGAAACCGCACCCTCGGGGGGGGGG
GGGGAAACCGCACCCTCGGGGGGGGGGGGGGAAACCGCACCCTCGGGGGG
GGGGGGGGAAACCGCACCCTCGGGGGGGGGGGGGGAAACCGCACCCTCGG
GGGGGGGGGGGGAAACCGCACCCTCGGGGGGGGGGGGGGAAACCGCACCC
TCGGGGGGGGGGGGGGAAACCGCACCCTCGGGGGGGGGGGGGGAAACCGC
ACCCTCGGGGGGGGGGGGGGAAACCGCACCCTCGGGGGGGGGGGGGGAAA
AAACTAAAAAATGTTATATCCTCCATCCCCCATGTAAAAAATTTTTCTGG
AAGAGCCCAATGCTATGATCTTCATTTTTATATTAGAAATTTTTTTTTTT
AAATCTATAGTATAGGTAGCACGGACAAATATTACAAATCTACAGGTTCC
TAGCCTCCCGCAAAAGGACCACAGATCATACCGCCAGGAGGAAGGAAACC
CAAATAAGCTAAACAATAAAAACTAACTACATAGGATAATTATTAACAAA
ATGAAAAACAAAAAGAGCTAGGAGAGCAAAAGACTAGAATAACGGTCCCC
CAAAACTTCCAGTATCCCAGATTAATTTTATTGTTATGCTCAATATATCA
TGATTTTGGACAACGCTAAAATCGGGGTCGCCATAAAGAAGTATTCTACA
CAGTGTTTTGGGATTAAATGGAAACAAGGTCATGTCAAGTTGAAGAAGGC
TGTCGAACATAACAAGTCTGTCATTGGAGTAATCAGAGCAATGCATCAGG
AAATGTTGTGTCATTTTGAACAGAATTACTTCGACAGTTGCAGAATGGGT
CGATTGTGTCTGCAAAGTTATGTCTAAATTTTTGGTCCCGAAGGTGACTG
AAACCAACCCTTAATTGGTTAAGTAGAACCACGCCATCGTTGTCACTAGC
CCTGAAAACTGAGTTAGTGCAAGGTCTAAAAAATTTAAGAATCGCTTGTT
TGAATAATGAAATAGAGGGAAGACTTTGTATATTTTCGCCCAGGTTATTC
CATTCATTGATGCAAAAGGGAAAAATGGAGGCACGGTAACGTTCAGTCCT
ACAAAATGGTGCCTCAAATGGTGGTTCTGGGTTGTATCCTCCGCCCTGCC
CTACGTTCTTCCTCCCCTCTTTGGGGAGGAAGAACATTTGAAAGATAAGC
AGGTGCAAAGCCATTGATTATTTTGTAAAAGTAAATTAGTCTTCGACTTA
GTCGCCTGTCCGACAGACTTTCAAGACCTAGCTCAAGATAAGTTTTTTCT
CTGGATGTTCCTCTGAAACATCCAGTTATTGCAAGACAAGCATCATATTG
AACTGATTCTAGATTTTCAGAAAAAGTGGAATTACCTGGACGATCATACA
CGATCTCCACAATCTAGATGTGGCCTAACATGGGTTTTAAATATCGTGAC
TAGTGAATCTCTAGGTAGGAATGCACGAAGCCGACGAATAAGCCCAATAC
CTTGATCAAGTATGAGACCAAGATGTTTTTGATGATCTTGTCGAGCAATG
GCTGCATTGTTAAAATAAATTTCTGGAGCATCAGGTAGATTTATCCTCCG
AGTGAAGTACACTTCAACGGCCTGTTTAGAAGGGTCAGGCTTGAAGGTCA
TTTTCCATTGATGAGCCCACTCACTAACCTTCTACATGTCACTGTTCAAT
TCGTTTTGGACAGCGAATATGATCAAGGATAAGGGAGAATATTGACGAGT
CATCAGCAAAAATTTTGATCATGGAAATAATTCCTTCGGGGAGGTCGTTA
ATATATATCAGAAAGAATAGTGGTCCTAGAATAGAGCATTGAGGTACACC
GGCCAAGACCTCCGTCCAATTGGAAGCTTGGCCTTCAAACCACCCGCTGC
AACCTACCTGAGAGAAAATTTTGGAGTAATGAGAGAAGGGGCCCGGACAC
ACCATATGACTTAAGTTTGAAAATCAGCCCATTGTGCCAAACTCTGTCAA
AAGCTTTGGAAATATCAAGAAATACTCCACGAGTATATAGAGGTGGATTT
GAATCGAAACCTACCAGGATGTCGTGCGTTATGGACAAAAGCTGAGACAC
ACAAGAGCCACCCTTGCGGAAACCAGACTGGGAATTAGTAAAGAGATTGT
TATTTTCAAAATAGGTGTAGACAGAGTCAAAGATGCATTTTTCATAGATT
TTACCAAAAATAGGTAGAAGAGACACTGGCCTGTAGTTTTTTTAACACGC
TCTTGTCCCCTTTGTTTTTATAGACAGGGACAACTTTTTTTCCAATTCGA
TGGAAAAACACAAGAATCTAGGGAAAATTGATAAACTTTCATAAGAGGTT
TAACCAAGGATTCATTACAGATCTGAATCATCTGTATGGAGATGTCATCC
CAACCATGCGCTTTGTTAGATGTAAGTGCACGTATAAAGGGCTAAAATCT
TTGCTTCATCAAGAGCGATATTGTTTATTTCAAGATTCGTAGCAAAGCTT
TGTTGTGGCAAAACACTATCAATGTCTATGAGAGAGCACTGATACGCAAA
AAAATTGTTAAACATATTTGTTTTTGTTGGAACATCAGCAATAAGATTAT
TGCTGGAGTCTCGAACAGGGGGAATCCTTGGCGACTTCCTCTTATGAAGA
AATTGATTTAAAATGGGCAAGTATCTTTTCGTTCCCAGATTTGGATCACT
TAGATTAGTTGCTAAACGAGAAAAATAAGAATTTTTAGCATCTCTGACTG
AAATTCTTAATCTTAGCAACGTCACAAATGCGAAAAAGAAATTCAAAAAA
TATTTATTCAGTCTGGTTCATTCAAAAAAAACATAACTTAAAACATTGCC
CTGGTTGACTTAAAAAAGGGACCTTTTTTGTTTTTTGATGGTTTTGAAGT
CAATCAGTGATAAAACCTTATATTAGAATATATCTTTCAATGGAATAAAT
ATATTTTAAAATTTATTCCCATTAATGATGTTCTAAGATCAAAGATTCAC
TTTTGTGAAAATGATAATCATAGCACAATTATTTAAGAAGTTGATTTTCT
TCTTCTTCATTTTAAATTTTAAATTTTCGAGATTTTTTGATTTTTTTCTT
TATTGCGATATTCCACTCCTGTTTGTCTTTTCAGCAAACACAAAATCACT
ATCTAATTCTATCAAAAGTTATAGCCTTATTTGTCTCCGCTGCAAATTAT
ACTGAGACAGACTTTAGTATATTTTTTATTAAAGTCATATTCTTAGAGAG
TATCATAAAAAAAACCCTGTTAAGGTGGTCATTTATTTTCAAGCTAATGT
AATCATCTAAGACTCGTATATTTTCGCAATATGACATCATTTTTCTAGAC
TAATACAGTAATTTCTGAGCTATATTTCTTTATCCCTCGAAAACCTTAAA
CAAAAACGTTTTCCTGTTTTTTAAGTATGTGATATTTCGTGAACAAACGT
GTTTTTCACGAATTCTTTTGTCTAAACAAAACCTATTTAAGTCTTCATTT
CCCAAGGAATTCTTTACACAAGTTTAGCTTGATCTGGTCATTGAAAGATG
ACGTTTTGTACCAACACTTTCCTTCTTATTGTCACCTTGATGATGTGTGC
ATGAAAGGACGTGCTTCATTGAAAACAAAGTTCTTTGCAATGTTTTCCCC
TTTCTTCTGTCAAATGCCATTAACTGACTCATTTGATAAATCAGAAAATA
TTACTTTCAACAAGTTACTGTCACAAAAGACTTTGTTACCGTTAATAACT
GATTGGTCTTAAAGCGTTAAACAGCTTCCTGCGTAGGACAACCTCTTGCT
TTGCGAAACGAATTTATTGCTGTCACTTTCCACGAAAGTCAGGTGTTTGG
GAGGTGCTTCATGATTTATCTTGAGTCACCTTTCTGAAAAATAAAGTGCC
TGATGGCCTATTTACACTGATTGCTTGTCATTCGCACTCCACACCTGGCA
ATCTTACANGTGCCTGATGGCCTATTTGCACTGATTGCTTGTCATTCGCA
CTCCACACCTGGCAATCTTACACAACCTTTACCATTAGCGGGCAAATTTC
ACCCGAAATGTCAGTCTTAACTTGTTTTTAATAACACTCTGGATGACCAC
ATTTTTTCGTTCAACGCATCAAAAAATATTTTTGGAAAAATACAAATTTG
TTTCACCTGTCAACCAGGGTAGCAATGGTAACGATTAATGAATAGAGAGT
AATTGTTTGTTTTACCCAAAGTAATTGCCTCAAATCGCAAAGCAAGAAAA
AGCAAGAAAAAAAAACATACAGTTTCTATCACTAAATCGACCATGACCTG
TATAATTTCACCCTGTTAAGGTATTAACTTCTTAAAGAAATTATTTTGGA
TTATTTCCAACATGCGAGAGACGATCAATCATTGAGATTTTCGGGACTCT
TTAGTGGTCGAGTGACTCGACTCTTATTCCAATTCAGTAAGAGGACTGCA
GCAAACGGGCTGTAAAGCTGCTAGTAACTATGAAATTAGAAATTTCCATC
TGAGGGGTTACACTCTCCAATCTCCTTTAAAGTCTCAAAAGACCGAAGAG
AAGAGCTTGTTCTTGCATACAGTACCCATATACAGCAGACAGAGCGTACA
CGTGCGGGTGATTAAATACGATCGCGCGGGATGCGGGTCAAAAAATTCCC
GTGAGCAATCTCGTTATTTATCAAAAAGTATGAATAGAGAGTAATTGTTT
GTTATACCCAAAGTAATTGCTTCAAATCACAAAGCAAGAAAACTGTTCGG
GAGGAAAATTTAAACACTTTAAATCTTAAAAACATACAGTTTCTATCACA
AAATGAACACAAAACTATTTTTCTGAATGACACTCATTCTATCGTATTTT
TTTAGCAATCAAAACGTTCGATTCCGATGTTATTCATTCGAGGTGACGGT
GTCATCCTGATTTCACCCTCTTTACGTGTCGGATTGTGAACATTCTGCGC
TCCTATTGGTTGGTTGTGTTATCCGGTCATAATGGCTGCCATGTTGAAGA
AGAAGACCTTTTTCATTGACACTGTATTACAAAAATAAAGGACAAACTTG
CTTTGTTGTGTTCGGTTGCTATGGAAGGTATGACCTTGGGAATATCAGTT
TTTTTTAATGTTGAATTTTTGTACATATTTTTACTTATTGCTTTATTATC
TCAAAGGAAGAGAAAAATGATGAGACTCGAAATATTTTGCTTCAAAATTC
AAACTCGCTCTTGAATAACTGAAATAAAAAGTAATTGCTCTTGAAATTTC
GACTTAAACAATAAAATTGTTCTTTCTTTATTTGGCATTTATCGACAAAG
TATGACATAATGAGACACAAAGGTTT

Coding sequence (CDS) from alignment at sc0000240:112952..121577-

>TCONS_00016486 ID=TCONS_00016486|Name=TCONS_00016486|organism=Clytia hemisphaerica|type=CDS|length=606bp|location=Sequence derived from alignment at sc0000240:112952..121577- (Clytia hemisphaerica)
CAATCAAAACGTTCGATTCCGATGTTATTCATTCGAGGTGACGGTGTCAT
CCTGATTTCACCCTCTTTACGTGTCGGATTGTGAATGGCTGCTGGTGAGG
GTGAGATGCACACTGTAATGGAACCTTTAGATTTGATCAAATTCAGTCTG
GATGAGAAAGTATACGTCAAGATGCGCAACGATCGTGAATTGCGCGGTAA
ATTACACGCGTACGATCAACATTTGAACATGGTGCTGGGTGATGTGGAGG
AGACGGTCACCACTGTCGAACTGGATGAAGAAACAATGGAAGAAATTTTC
AAGCAATCAAAACGTTCGATTCCGATGTTATTCATTCGAGGTGACGGTGT
CATCCTGATTTCACCCTCTTTACGTGTCGGATTGTGAATGGCTGCTGGTG
AGGGTGAGATGCACACTGTAATGGAACCTTTAGATTTGATCAAATTCAGT
CTGGATGAGAAAGTATACGTCAAGATGCGCAACGATCGTGAATTGCGCGG
TAAATTACACGCGTACGATCAACATTTGAACATGGTGCTGGGTGATGTGG
AGGAGACGGTCACCACTGTCGAACTGGATGAAGAAACAATGGAAGAAATT
TTCAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009209XLOC_009209Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00016486-proteinTCONS_00016486-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00016486-exon-sc0000240-1575043694:121323..121577TCONS_00016486-exon-sc0000240-1575043694:121323..121577Clytia hemisphaericaexon
TCONS_00016486-exon-sc0000240-1575043694:112952..113422TCONS_00016486-exon-sc0000240-1575043694:112952..113422Clytia hemisphaericaexon
TCONS_00016486-exon-sc0000240-1510915933:121323..121577TCONS_00016486-exon-sc0000240-1510915933:121323..121577Clytia hemisphaericaexon
TCONS_00016486-exon-sc0000240-1510915933:112952..113422TCONS_00016486-exon-sc0000240-1510915933:112952..113422Clytia hemisphaericaexon
TCONS_00016486-exon-sc0000240-1491911889:121323..121577TCONS_00016486-exon-sc0000240-1491911889:121323..121577Clytia hemisphaericaexon
TCONS_00016486-exon-sc0000240-1491911889:112952..113422TCONS_00016486-exon-sc0000240-1491911889:112952..113422Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000240supercontigsc0000240:112952..121577 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
177.251	165.286	165.574	163.432	16.7499	12.7241	29.1142	32.2121	47.7649	40.7562	25.5152	30.3462	25.5576	27.2054	32.8873	38.2621	66.0416	52.9591	13.4223	17.6331	42.131	40.5822	87.2572	71.9617	29.3233	27.354	37.8261	26.4106	42.5765	39.8867
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001163LSM_dom_euk/arc
IPR034105Lsm3
IPR010920LSM_dom
Vocabulary: Biological Process
TermDefinition
GO:0000398mRNA splicing, via spliceosome
GO:0000956nuclear-transcribed mRNA catabolic process
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0000398 mRNA splicing, via spliceosome
biological_process GO:0000956 nuclear-transcribed mRNA catabolic process
Blast
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BLAST of TCONS_00016486 vs. Swiss-Prot (Human)
Match: LSM3 (U6 snRNA-associated Sm-like protein LSm3 OS=Homo sapiens GN=LSM3 PE=1 SV=2)

HSP 1 Score: 117.472 bits (293), Expect = 1.060e-32
Identity = 71/91 (78.02%), Postives = 86/91 (94.51%), Query Frame = 1 
Query:   61 HTVMEPLDLIKFSLDEKVYVKMRNDRELRGKLHAYDQHLNMXXXXXXXXXXXXXXXXXXXXXIFKQSKRSIPMLFIRGDGVILISPSLRVG 333
            +TV EPLDLI+ SLDE++YVKMRNDRELRG+LHAYDQHLNM+LGDVEETVTT+E+DEET EEI+K +KR+IPMLF+RGDGV+L++P LRVG
Sbjct:   12 NTVEEPLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEETYEEIYKSTKRNIPMLFVRGDGVVLVAPPLRVG 102
The following BLAST results are available for this feature:
BLAST of TCONS_00016486 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
LSM31.060e-3278.02U6 snRNA-associated Sm-like protein LSm3 OS=Homo s... [more]
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