TCONS_00016422 (transcript) - C. hemisphaerica

Overview
NameTCONS_00016422
Unique NameTCONS_00016422
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2253

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00016422 ID=TCONS_00016422|Name=TCONS_00016422|organism=Clytia hemisphaerica|type=transcript|length=2253bp
CTAAAGAAGATTGATAAAACCAAAGATGAACTGGTCCAAATGCAAGCCAC
TAAAGATGAATACGTGAAAGAATACCTGAAATCAGCAGACGTTGACGACT
CGTCCGAAACGGCGATCAAgaacaaaatgaatttcgagaaaaacaatcaa
aagaccAACGCCAGCATTCAATTACTACAAAAGAAGTTGGAAAAATATCA
GGAGAAGCTGAAGGTCCTCGAAGAAAGAGGGATTCATGGACCAAAAAGAA
TTATCAGGGCTGTACAAGACTCAGTGAGATCTGGTGCGTCAAGTATCACA
GGGGCCGTCTCAAAGCCGTTAGGTTCACTTAAcaattttatgaagaaaga
CAAACGGAACACAAGTTCAGACAATGTTTCTTTACATACTTCACAAACGG
AAGATGGGATGGAGAGGATGACAAATAGCATGAATAATATCAGTGACGAA
GACAGCTCGAGTTGCTCCAACAACATCCTGGGATCGTCCCATCACAGTGA
TATAGATTGTGGTGGCATGAATGAAAACCATCCTCTACATGGTATCCATT
TTACCGAACGCATTAATTCGCAGAACGAACAGATCGAAGATTTAGTAAAG
GAGAATGAGGAGATGAGAGAAGGATTCACAAAAATGAAGGACGACATGGA
GCGAATGTTACAAAGCTTCCAAGAAGAGAGATATAAGAATGAACAATTGA
GTAATGAAGTCAGTGACATGTATCATCAATGGCATGATCTGACTGAACTA
CACCAAAACGAGATGTCTGGCTTGAAGCAAGAAATGGACCAGACACTGGA
ACGAATCGAATGTATGGAATATCGATTCTCTGAGAGATCGGGTGATATCG
AAGAAGCAATCGGTGGATGTGAAACTCGCATCACTAAGATGGAGTTGcaa
caacaacatcaacaacaacTCTTACTTTCGGTTGACGGTTATTTCGACGC
TGGCGGGAACACGAAAGCTCTTTTAACCAAACTTCTTTCTCTCGTGCTTA
ACATGTTCACTATACTACTTTTACTATTATCCACTTTATCGAAAATCCTG
ATGCCGTTCACTTCTACAAGGACTCGTATAATTACAACTTCAATCACGAT
ATTGTGTCTTATAATTTTCTGTCGGAATACCGAAAACGGACTAATGACAT
TATATGATATCGCAAGACAAATATTTCTCCCGTTATATAATAGGATACCT
TATAGGACTGCATCTAGTGAAATGAGTAATAGTGAATCCAGTGAAATGGG
AACCGAATCTAGGTAGCATATGACGTGTCGTGTTACCATACAACTCATGA
CCTACACTGCAGATTGTTTATATATAATTGGATGTGTACGAGGCTGGCCT
CGTCTTGATgtagaaaattaaattattgaTGTTGTTTTATTATTGGTACT
TCGatactttaaaaagaaaattccaaTTTACCATTGCAGTTCATTTTTCG
AAGGTTGCTTAAAATTATGATGGAGCGTTGATTGGCTTTGAAATGATATC
GAAATGAGTTTACCACTTTTTATGGATTGATGATTGGATAAATTTGAATG
TATAAAATCTAATTAGTTATGTGGTTCCATCATGTTTAGGCGTTTAAAAT
CAAATATCCATCGAGAGAATACTAATTTGCTAAGGAATATGATGTACTTG
ATGAATGAGTTGTTGATTTTATGGATCAATCTTTTGAATGGTCACTTGGG
AATTGTTTTCACAATCGGTTTATGTTTTTGGTTCCCATGCACGAATTTTG
GAGATTTATGTTATAACGTCTGTGATATATTACTTATTTTAACAAGTAAC
TGTGTCTTAAATTATCTGCCAAACAATTCgatcttcttcaattttcttct
aGCAATTCCACTAATGATTAATAGTGTAGCTCAAAAATCTGCGGTCGAAA
CTCTCATCTAACCCGGACTCTAATGAATTCATCTACAGGGATTTTCATAT
TTGGTTAAGTTACATAGCTTCCGCAATTATGGAAGTAAACGTTCAATTTA
CAGATTCgaatgtttgcttccataatggcggaaatcgTATGAATTAACAA
AACACGAAGAACCTTTATGTGCCTgaaattttctcagttttcttTTAAAC
GTACTATCAAAGCTCCATATCATTTTGCAAAGAACgtcttttgaatgatt
tttcatGAACGTTGAGTTGGGTGTTGATTCGATAGACGATGGCTAGGATA
ACAATCCTGTAATCTTCATCAAAAGATTGAACATCTTGTCTCTAATATGT
TTT
Run BLAST on NCBI

transcript from alignment at sc0000237:353292..365221+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00016422 ID=TCONS_00016422|Name=TCONS_00016422|organism=Clytia hemisphaerica|type=transcript|length=11930bp|location=Sequence derived from alignment at sc0000237:353292..365221+ (Clytia hemisphaerica)
CTAAAGAAGATTGATAAAACCAAAGATGAACTGGTCCAAATGCAAGCCAC
TAAAGATGGTATGGAATTTCATTCTCTCGATTTCTAGTGTGATAACGAAT
GAATGAACTAGAAAACCTTACACTTGAGGTgtgttttttaatcaaaagga
GTTTTTTCCTTTGTGTTTATGGTTATCGATTACGAGAAAGAAAGAGTTTC
TTGACATCAAATCGCTGGTAAATTACTAAAGCCTAGgctgaatcacagac
ctctacaaaaccgcaggtagtataaggagcgTGAATCCATCAGTGGGTGC
CAGCAGCCGAGAGATGCTAGCTTGAAGCCGAGACAAATCAGTACAAACTC
TACAGTTTGAAGCCTAACTTGTTTTACTTTTCCTTTGTGCTATAGAATAC
GTGAAAGAATACCTGAAATCAGCAGACGTTGACGACTCGTCCGAAACGGC
GATCAAGTAAGCCAACTTCATTTCTATAGGCCATTCCAGTAACCAGGACC
AATGGTCTCTTCTAATTGGTCTAAAATTTTTGCGATGAgagtaattcatg
atatgcaccattgcaatgtcttccattccacccaatagctgattggttga
aagtgacgtattgactgattttacgtcacttacaaccaatgaaCTACTGG
TTCCGTggtgtaatgtcagaagacattgcagtggtgcatatcatgaattc
tagTTCTAACATAGGATTCTTTTTTACAGgaacaaaatgaatttcgagaa
aaacaatcaaaagaccAACGCCAGCATTCAATTACTACAAAAGAAGTTGG
AAAAATATCAGGAGAAGCTGAAGGTACTATTTTGATTTATCACCGATACT
CATCTTGTCAAAACAACTAATTGTTCAACAACGTTATTCCTTAAAACGGA
AGTCTTTCTGGTCTGTGATTCATAATTAAGCAAGCTAGCATACATTCAAA
GTCGTCCTATGACTTCTGAATCTATGTATTTTGATGGCcagaaaagtgtt
ttttttggGAGGTATTgtgagaaacatttttttatggTATGTAGTAAGCT
ATTGTAGATCAGATGCATTTTATCAAATcaagttttagctttttgttacC
GAGCTGCGAGGTTTGTCAATCTGTTTGTCTTACCGATCCGAATCAGTATC
GGAAATTTCGATAATGAATATTTCCTACCTCGGTGGTCACATTAGTTTTA
CATGGTGGCCACGCTCCTGGAAATTCCTGGAATATCCTGGAATTAATGTT
TTCTCCTGGAAAGTCCTTGAAACTCCTGGGatttcttgtaatttttcaaa
atgtcctggAATGTCCTGGATATTCTAAAttctttgaatatatttttttt
tcaatcaacttTTTCGTTTCGCAttctaaaattggaaaaatcattTGATA
TTTTCCTTGCTGAGAtagtaatattttatttttttatcctggAAAATCCT
TGAATTTTTCTGTTTAATGCTATTTTGTCCTGAAATATCCTGGAATTTGA
TGTTCTAAAGTCCTGGAAAAAGTCGAAATTTGTCCTTGAAAGTCCTTGAA
AGTcctggaatttgaaaaaaataattctgtgGCCACCATGTTTTAGCAAg
aactcaaaaaagttcattatatctcaaattttttattaaGCTCTTTGATC
AGTTTTTAACGAAATTATCATTTTACATTCGGAACAACGttcaaattcaa
agaatttcgtCATTTTTACATCACtccaaaattccaaaaaaacctGTGGT
CTGAGAACTGAggtcaattttcaaaagatctttatcgtatcaaaaaattg
attcaaagtttgatgtatttttatacTATATCTTTCTTTGATTATCTATA
AGTATATAGTGTTTTTGATGTTCTACTATAAGTTTAAGAGTTTGTTTGTT
GTATTGTAATAGTTATTGTAGAGAACTACTTAAATTTCAAGATGAATTCA
AGTGAAAAGATCTTCATTGTATGGCTgtattttttcctatttttcattaa
aattgccGCGTATCATGTCTTAAAAGTGCCCCTTATTCCTAAAACTTGCC
ATGTTATTATTGTACATAAGGCTCTACGTTTTGGATTTTTAAGTTTAATC
AAGGCCGAACAAAGCCTATTCAAAGTTAACTTTGACATTTTACTTATTTC
AGGTCCTCGAAGAAAGAGGGATTCATGGACCAAAAAGAATTATCAGGTAT
ATTTGCAAACACACATTCCACAGGCTTTCAACTCCTTCAGCACAAGAGAA
AAGCTATTTTAAAAGATGGATTCATAAATCTCGATGCTTTCTGGTGAATC
GCTTGCATGTTTGTCTTGtggttttttgaaaacttatcacCGCTTATTAA
CACCAAAGACTAGGCTTTTAGATGGAGCCCTTTTTAAAGCGTTAAGTTCT
TTCCACTTCCTATCAATCAATGTCTCGAAACTTATGCAAGAAAACTGTTG
TCGGCATGACTAATTTGAGCACACTTCTTATCTTGATAATACTTTATAGT
AGCTCTTATAACATCTTGACATTAACTCTCTTGTAAGATCTTAACATTAT
AATTTCTTTAAACCATTTTTATATGAAGGGCTGTACAAGACTCAGTGAGA
TCTGGTGCGTCAAGTATCACAGGGTAAGAAAATTATAAACTATCGTTTTG
GATAAAATTTTGTCAAGCATATCGCCGTGTGAACCAGCAGTGCGAATCAG
TCAAAAGTTCGTCCGCCTCAGTGAAGTATATGAAGAGGAACTTCTGTCTC
AAAATCCTACATAATTCCTCAAAATTTCAatgtgctaatttgctgtgtaa
aatcaattttatggCTCTGATGAAAGACTTTACTTTGACTACTGAAAAAG
ACTAGACACcgattaaataaaaaatagcgTACAAGTAAAGGTTGCTAACA
ATTGTTGCTCACCAAAAACCGACTAAGTTCATTATACAGTTgcaggtttt
gttttgattggttcACAGTAAGGAGTACTTTGCTTCTCAATTTCCTCGCC
TCGTTTCCATTATCTCTCTCAAAAACTATTTCCAAAATACACAAAAACAT
AACATACTATTCAACGTTCGTTTCCCTTtaataaaatatgtttttaaggA
TATTATTCCCTTACTCGTTCCTGCAAGAAAATAATAAGCTCTCTTATTTT
TCTCGCCTGTGAGATTATTTTATCggttcaaaaaatatattttcagcaAA
GATAAGAACCTGCATGTATTTTCTCCGTTTTGAAGATCTAATTAtttcat
ttgaagaaaaattcgaaGTTTTGTGTTTTTAACTGGGTTTTACTTGTTTA
CGATCTGAAGTAAGGTACAGCAAAATACATGTTccacttttctattttga
aattgCCACTAGTTGTCTTTATAGTTAATATTGAAATTTAAGGTCagtaa
aaaaagaagattttagtTTTCTCAGACACTATTTTTAAGATTAATAAGAC
CTTTTGGTTTGATGTTGGTGACTGTAATACAGTTATTATATTTACCGTTG
AGGATTATGTATTTGTTGGAGAGAATTAAAACAGGAAACATAAGTAGTAG
TTATCAGACTTTGAAGAGCTGAAAATAAACTATTTTACTCATTCTGAAAT
AAAATTCATTGTATAAGGTTCACCGATAGCAGTCAATTTAATTTTACATT
TTGCACTTTGAATTCAGGATattcaagtttagaaaaaaagttgtgTGAAG
TTTAAAGATACAATCTCATAGAAAACCGAGCTCACTGGAGCTATTTAGTT
AAAAACAAACGTTTTTTTTAGAACGCGTTAAAAATAAGCAACCACTTCTT
TGCCTAGATTGACTTATTAACTTGAAACATTTTTGCTGGTTGATCTTTCA
TGGGCTATAGTGCTGCTGTCTTCTCTCAAGATGAGATTCTAAAAATTATA
TCAAGTTATgagtttttcttgatttttgggaaGGTTCTTACAGTAGTGCG
TTTCTAAAACTACTCAATATTAAAGCAGTCaaaatattcattaaaaaaGA
CAACGAACGAAACGCGACGATAAAAAGGGACGAGATAAAAGCACACATGA
AACCTCTTAGTGGGAAAGAAATATCCCCATTTTTCgtttaaatgaagaag
aaaacaaaaataaaagtcaacattttaactgaaaaacataatcaattttt
gaaaagtaaagtCTAAGAAAGTCAACTGAGTCGTACACATAGGTCGTGTT
CGgtcttttttcatttgttgttgtggttgttgttgttgaaaaaaACACTT
CAAACTTTGCTTGAATGGTTTTTATTTGAAGAAGAAGATTCTACTTTAGC
CTTACATTTCCTGTTAGCACGACGAATGGCTTCTATTATGCCTCGGTCCC
CATACCGGCCATCTCTTAGACGGTTAGTAAACAATCTCCACCTCCTGTAT
CATAGATTAGATTAGACTGTTTCGATAAAATTAAAGACACATAGACGAAC
AAAGGGCTGGAATAGCCCTATTACGTAGCCCgcttaaatttcattttttt
cccaattccggccatttaaaactaaaaaacttGGATTGTGGTGACAAACT
TGAGTCTATTGTACGTAGGTAGCTTAGGCAGTATTTGCTATCTAGTTTAT
CAGgaacttctttctttttttctagtgTAGTGTAAATCTTTtctgtctgt
agaaaatgttaCATCAATTTCAAAACCTGATCATTCCCCTAATGTCAAGG
TCGAAAGTTCGAATGAATTCAAATGTCTaagtagtaagtctgcgactgcA
GTAGTAGTTTCTATGACATTCACACCTATCGTAAACTTTTAttaattaat
gaaatttaaaatttctcttcaTTTACAGGGCCGTCTCAAAGCCGTTAGGT
TCACTTAAcaattttatgaagaaagaCAAACGGAACACAAGTTCAGACAA
TGTTTCTTTACATACTTCACAAAGTAAGTGACGGAGAAtgtcaattcatg
atatgcaccattgcatcACGAAACCCAAAAGCTGATTGGttataagtgac
gtaaaatcagtcaatacgtcactttcaaccaatcaactgttgggtccgtg
gaagacatttcaatggtgcatatcatgaatggGAAAAAACTGAGGTTGAT
TTTTTGTGTTATTTTTAATAttactctctaattcgacttcTCTTTATAAA
CAAgatttttattcgaattagagaaagattgaGATTGTGATTGTGAAGAA
GATATAGGTGTTCTATGATAATATGATCATTTTTACGGGATAATTTTAGT
TTGTATATATATATACTCCTATAATTTTCCTGGACCTACTTTGTATTAAA
TTTAGCCGTGTCTAGCATGTTATACCTTAGACTatagttttcattaaaat
aatgCTTTAATCTTTTTTTATGGTCAATCTAATCCACAGATTgataaagc
ctgaagggctagatatcgtgctttaagccatcgcaggcaaagaaaaattg
aatatccatatcggaaaaaatattgttgatattGTTTTGGAAAACCtgtg
aagcttctgattggtcaatcgctgaaattctattgtaatgtcacttgacc
taggtaggatttcctacctaaccaaggcacacttttcagccgaagcacga
catctagcccttcgggctttataaatctatggtctaGCCCACACCGATGA
GACTGGGTTCAAGGCATTGTCTAACTTTCTCTAATATTTTTGCAGCGGAA
GATGGGATGGAGAGGATGACAAATAGCATGAATAATATCAGGTTCGTGTT
TATTCCATTCTTGAATCGGATCACTGATCTCTAAATCGGTGTTAAAATGT
TTTCCGCCGAATTTACGTCTCAGCGAAGTACTCTCAGGTCGAAATAAGCG
GGGGGCGGCATAACTTAATAAagcagggggggttggaataaaaatgtcct
gggtgtaaaattttcgaaaaactaaTTAGCGAGGGGGATGGTTATTAATT
ACCCGAAAGTATGAAGATGCTTTGTTcaccaaaaatttcaagaatacgtg
ctaatttgctgtgtaaaatccattttccgtctctAGGCtagttcgaatgt
tttgaaattaaagtgtttgaaaatcttgaaatgaGCAGTTACCATATCTA
GTgtcaaaagaaatattttcccaaTTTCGAAGTGTGAACATCAGTTAAAA
TTCATCGAATGATGAACACACTAAACTCAATTGGGATCCAGTACCGTTAT
TGAGAATTCCATGATTTAATTGAATATATCAACACATTTATTTTCGATAT
TTCCTTTTTCTAGTGACGAAGACAGCTCGAGTTGCTCCAACAACATGTAA
GTTTCCTTCGATTTGACCTTTCATCATGTTGTTTAAAATTTGAGGACGAG
AAGGTTCCAGTCTGTTCTAcgcacagatatcttatataaaacactagata
gaaaGTTTGTTCTACactattgaatttttttttgattatgGCTTTATTGA
TTGAGTAATGAATTATGAATGCAGCAACGTCTCGTTCTTGCGAGAGCTGG
CAATAAAAGAGCCTTCTTGTTTAAACATTGTCTTGGAAGTAAGTATTTAA
TCTTTCCGAATGAAGAAGGGCGAAGCTAAAAGATCAATTAACAGCAATCA
AAGTCCAAAATCAAACAAGAAAGGCAGTTAATCTGAGACCGTTTTTGCCT
CCTTCTTTTAGCCTGGGATCGTCCCATCACAGTGATATAGATTGTGGTGG
CATGAATGAAAACCATCCTCTACATGGTATCCATTTTACCGAACGCATTA
ATTCGCAGAACGAACAGATCGAAGATTTAGTAAAGGAGAATGAGGAGATG
AGAGAAGGATTCACAAAAATGAAGGTAGTCTTTTCTATACACCAAGATCT
TCACATGTTTTGTTAAGGTACGTAATTTCCACCATCATGGAAGCAAAcat
tcgaatctgtagaggcgattctatgcaaatcgaacgtttgctttcataat
ggctgaaattacgtaacttaacaaaacatgaaacATGAATATCCTCAATC
CACCGAGATCTTCATGGATAGCTCGAGTGAGTATCTGGCGTAGTCGTTTT
ATTTTCCAGAAGTTTAGTGCCGCAGGAAGCATATTGTTATGTGCTCTAAT
TTGGAAGGATTCTGCGTGCGAATGCAATGGAACGACTTCTTTCAAGGGGG
GTTAATAAACGATTCCTCAATCTTTCTAAAGCAAAGATTGAATTGAAAAC
GAAAAATCGGACACTGACAGTGTTAACAATTTATCTGTCTCAAACGGATT
ACCGTCTCAGTTAAGCATAAAAAGAGACTTTTTCGCCCTTAGAAAAGTTc
tgaaaattattgaaaatctaGACTAATTTTTCATGTTGAGTCTGTTTCCG
TCtgagatgaaaaaaattgcctttGACCATTATCAATCAAATGAGGAGCC
CAGAAAAAAGTTAGTCTACTAAACTAATGTTCTCTTTCTGATTGACTTTC
TGCATCTCTTCTTCAGGACGACATGGAGCGAATGTTACAAAGCTTCCAAG
AAGAGAGATATAAGAATGAACAATTGAGTAATGAAGTCAGTGACATGTAT
CATCAATGGCATGATCTGACTGAACTACACCAAAACGAGGTTAGTGAAct
aactcgaacccagtccatTAGTTCGCTCATTTTGGTACAGGtagctctgg
gtacgagattggtTAGTGAAGGTTTCTAGTTATAAATTCTCTCTAGGAAA
ATAACCGATCTTTCTTGTTTGTATTGTAACTAATGAGGAGTGAAACTCTT
TGTTATAGTTTGCAGTCCTCAGTTTCATCTAATACCAAAAGTCATACTTT
AAAGAAACCGATAAACTTTTTTCCTTTGCTTAAAGTTTCtcctcttttta
aattttatgcaCTCAATTTTTTAAACAGTTTGTGAACATTTCAACCTAgt
gaatttcatttcaatttttactgATAATGATGATGATCGGAAGACACCGA
GACGTCTAAATatatgttttaaaaatgttattaaaataaaatgaaaacgc
tATTGTGCTTGAAATTCACGTTAAAAATATTCAGAAGGATCAATCAATTT
AATTAAAATATCTTGCTTTTTCCCGAGCATTCATCAGTTGGTTTTCTCAG
TTATGAAAGTATGAAATTGCTCTGCAAATTACAGTGTTGAGCACTCTGTT
GAATTTAAAGTCAGTTGTACAAATAGTACCAAAAAATAAATGTCTGATTG
CTCTTATTGTTGTATGTTCAATCGTCTTCAAACCAATTTTGTGGCTATTG
TTTTTGTAAGGCAGAAAATCGCCATCTAAATAGGCTAAGAACTACCAGAG
TGTGATTAATTACTTTTACTTCGTTCGGGACTTCATTTTATGCTGAGCTT
AACCACTTGGAATATCACGAACTACCCAcgagatttttttttgacccaCG
ACCTACCcacttaatttttttcaggacccacgaactacccacgtaaTTTC
TTTCGGGACCaacgagggcacgggacgcacgtAATTAATCACACTCGAAC
TACCATAGTCCTATGAAAAACAAACtaggtctggaagcctttttctttcc
attgttaCTTAATTGAACTTGcattgagaaattagtttgttttgctcact
ttttgatcatgtgatcaaATCTTAAGCCAATCCAAAATggagtacttggt
aacgtgatcaaaaactgagcaaatcgattttcatcttttgataataacaa
agaaaaaagctaacaaaaagttaaaacaataagcttccagatcAGGGTTT
TTTATACAGACTATGTTACAAACTTTCCTCTCTCTCTTTTCTTCAGATGT
CTGGCTTGAAGCAAGAAATGGACCAGACACTGGAACGAATCGAATGTATG
GAATATCGATTCTCTGAGAGATCGGGTGATATCGAAGAAGCAATCGGTGG
ATGTGAAACTCGCGTATGTACTTTTCTTATatctttttgcaaatgttttg
ttttctgATACTGATTACAAAGTATAAATTATTATTCTGAGATGTTCTTC
ATGACCTTCCGCCTAGTTACATTAAGAAGTGGGAAAATCTAAAACGAGTC
TTCAACTCGTCCTGTTTTTGTTGAGAGAGAATTTCTTGAGTTGCTACAAG
GTTATGTACCGATATACGTTGTCAATATGTACGTTAAAATTTTGGGTTAT
TTGGGATACTGGGCGTTCCGAAACCAAATAAAGCCATCTCATTGGTCAGA
AATAACGTAATCATTATAAAACAACCAATAGAAAGCCTTCTTTTTTTCAT
TCCACAGATCACTAAGATGGAGTTGcaacaacaacatcaacaacaacTCT
TACTTTCGGTTGACGGTTATTTCGACGCTGGCGGGAACACGAAAGCTCTT
TTAACCAAACTTCTTTCTCTCGTGCTTAACATGTTCACTATACTACTTTT
ACTATTATCCACTTTATCGAAAATCCTGATGCCGTTCACTTCTACAAGGT
GAGAGATCAGTATTCATGCAGTGTACAAAGTATGAAAAAACTCGCTagtg
aatgggcttttccagaaaaaaaccgtataccccctgttgaggaggtcctt
ccctctgtggctggaaatgctgtactctcgggtacctaatagccgggggg
gcccgctaattaatttttcggaaattttccacccaggacattcttattcc
aacccccccgcttattgattttcgNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNaggacatttttattccaacccccccgcttattaattttcgagat
tttttccaacccccctgcttattccaaaccccccggctattaggtacccg
agagtagccccttggaattccaggcaatttcaggtttaaactcCTCtgga
attttagtaggatttaaaaagctacccccatggaattccagttatttttg
acagacttttgtatctccctatggaattctgCCACATAttaaaccttacc
cccttggaacgaaAATGGActtcctcaacagggggtaaacggtgtttttc
tggaaaagcccaattttttctttctaaagCTTTTTATATGAAGGTAGTAG
CAGGGCGCTACTCTTTCTCCCTTTCTACACTTTCCCTTGAGTGTACAATT
TGTTAGTCACCCTTCTTAAGCAATAGCAGCAGTAGCCATCAAATTCTATT
ccagtgtcataaaaatttttatattgttttcaaatttttaactgCCTTTG
ATAAGGAATTGAATGGAAACATTCCTTGACTGCTGCCAACTGTTTTGGCT
TATCACGGCAGCAATCAGTAATGATATTTTCCCGTTTTTCGTTTCAGGAC
TCGTATAATTACAACTTCAATCACGATATTGTGTCTTATAATTTTCTGTC
GGAATACCGAAAACGGACTAATGACATTATATGATATCGCAAGACAAATA
TTTCTCCCGTTATATAATAGGATACCTTATAGGACTGCATCTAGTGAAAT
GAGTAATAGTGAATCCAGTGAAATGGGAACCGAATCTAGGTAGCATATGA
CGTGTCGTGTTACCATACAACTCATGACCTACACTGCAGATTGTTTATAT
ATAATTGGATGTGTACGAGGCTGGCCTCGTCTTGATgtagaaaattaaat
tattgaTGTTGTTTTATTATTGGTACTTCGatactttaaaaagaaaattc
caaTTTACCATTGCAGTTCATTTTTCGAAGGTTGCTTAAAATTATGATGG
AGCGTTGATTGGCTTTGAAATGATATCGAAATGAGTTTACCACTTTTTAT
GGATTGATGATTGGATAAATTTGAATGTATAAAATCTAATTAGTTATGTG
GTTCCATCATGTTTAGGCGTTTAAAATCAAATATCCATCGAGAGAATACT
AATTTGCTAAGGAATATGATGTACTTGATGAATGAGTTGTTGATTTTATG
GATCAATCTTTTGAATGGTCACTTGGGAATTGTTTTCACAATCGGTTTAT
GTTTTTGGTTCCCATGCACGAATTTTGGAGATTTATGTTATAACGTCTGT
GATATATTACTTATTTTAACAAGTAACTGTGTCTTAAATTATCTGCCAAA
CAATTCgatcttcttcaattttcttctaGCAATTCCACTAATGATTAATA
GTGTAGCTCAAAAATCTGCGGTCGAAACTCTCATCTAACCCGGACTCTAA
TGAATTCATCTACAGGGATTTTCATATTTGGTTAAGTTACATAGCTTCCG
CAATTATGGAAGTAAACGTTCAATTTACAGATTCgaatgtttgcttccat
aatggcggaaatcgTATGAATTAACAAAACACGAAGAACCTTTATGTGCC
TgaaattttctcagttttcttTTAAACGTACTATCAAAGCTCCATATCAT
TTTGCAAAGAACgtcttttgaatgatttttcatGAACGTTGAGTTGGGTG
TTGATTCGATAGACGATGGCTAGGATAACAATCCTGTAATCTTCATCAAA
AGATTGAACATCTTGTCTCTAATATGTTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009170XLOC_009170Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00016422-exon-sc0000237-1491911889:353292..353349TCONS_00016422-exon-sc0000237-1491911889:353292..353349Clytia hemisphaericaexon
TCONS_00016422-exon-sc0000237-1510915933:353292..353349TCONS_00016422-exon-sc0000237-1510915933:353292..353349Clytia hemisphaericaexon
TCONS_00016422-exon-sc0000237-1575043694:353292..353349TCONS_00016422-exon-sc0000237-1575043694:353292..353349Clytia hemisphaericaexon
TCONS_00016422-exon-sc0000237-1491911889:353687..353747TCONS_00016422-exon-sc0000237-1491911889:353687..353747Clytia hemisphaericaexon
TCONS_00016422-exon-sc0000237-1510915933:353687..353747TCONS_00016422-exon-sc0000237-1510915933:353687..353747Clytia hemisphaericaexon
TCONS_00016422-exon-sc0000237-1575043694:353687..353747TCONS_00016422-exon-sc0000237-1575043694:353687..353747Clytia hemisphaericaexon
TCONS_00016422-exon-sc0000237-1491911889:354021..354114TCONS_00016422-exon-sc0000237-1491911889:354021..354114Clytia hemisphaericaexon
TCONS_00016422-exon-sc0000237-1510915933:354021..354114TCONS_00016422-exon-sc0000237-1510915933:354021..354114Clytia hemisphaericaexon
TCONS_00016422-exon-sc0000237-1575043694:354021..354114TCONS_00016422-exon-sc0000237-1575043694:354021..354114Clytia hemisphaericaexon
TCONS_00016422-exon-sc0000237-1491911889:355444..355487TCONS_00016422-exon-sc0000237-1491911889:355444..355487Clytia hemisphaericaexon
TCONS_00016422-exon-sc0000237-1510915933:355444..355487TCONS_00016422-exon-sc0000237-1510915933:355444..355487Clytia hemisphaericaexon
TCONS_00016422-exon-sc0000237-1575043694:355444..355487TCONS_00016422-exon-sc0000237-1575043694:355444..355487Clytia hemisphaericaexon
TCONS_00016422-exon-sc0000237-1491911889:355870..355914TCONS_00016422-exon-sc0000237-1491911889:355870..355914Clytia hemisphaericaexon
TCONS_00016422-exon-sc0000237-1510915933:355870..355914TCONS_00016422-exon-sc0000237-1510915933:355870..355914Clytia hemisphaericaexon
TCONS_00016422-exon-sc0000237-1575043694:355870..355914TCONS_00016422-exon-sc0000237-1575043694:355870..355914Clytia hemisphaericaexon
TCONS_00016422-exon-sc0000237-1491911889:358120..358214TCONS_00016422-exon-sc0000237-1491911889:358120..358214Clytia hemisphaericaexon
TCONS_00016422-exon-sc0000237-1510915933:358120..358214TCONS_00016422-exon-sc0000237-1510915933:358120..358214Clytia hemisphaericaexon
TCONS_00016422-exon-sc0000237-1575043694:358120..358214TCONS_00016422-exon-sc0000237-1575043694:358120..358214Clytia hemisphaericaexon
TCONS_00016422-exon-sc0000237-1491911889:358987..359032TCONS_00016422-exon-sc0000237-1491911889:358987..359032Clytia hemisphaericaexon
TCONS_00016422-exon-sc0000237-1510915933:358987..359032TCONS_00016422-exon-sc0000237-1510915933:358987..359032Clytia hemisphaericaexon
TCONS_00016422-exon-sc0000237-1575043694:358987..359032TCONS_00016422-exon-sc0000237-1575043694:358987..359032Clytia hemisphaericaexon
TCONS_00016422-exon-sc0000237-1491911889:359555..359587TCONS_00016422-exon-sc0000237-1491911889:359555..359587Clytia hemisphaericaexon
TCONS_00016422-exon-sc0000237-1510915933:359555..359587TCONS_00016422-exon-sc0000237-1510915933:359555..359587Clytia hemisphaericaexon
TCONS_00016422-exon-sc0000237-1575043694:359555..359587TCONS_00016422-exon-sc0000237-1575043694:359555..359587Clytia hemisphaericaexon
TCONS_00016422-exon-sc0000237-1491911889:359953..360115TCONS_00016422-exon-sc0000237-1491911889:359953..360115Clytia hemisphaericaexon
TCONS_00016422-exon-sc0000237-1510915933:359953..360115TCONS_00016422-exon-sc0000237-1510915933:359953..360115Clytia hemisphaericaexon
TCONS_00016422-exon-sc0000237-1575043694:359953..360115TCONS_00016422-exon-sc0000237-1575043694:359953..360115Clytia hemisphaericaexon
TCONS_00016422-exon-sc0000237-1491911889:360758..360880TCONS_00016422-exon-sc0000237-1491911889:360758..360880Clytia hemisphaericaexon
TCONS_00016422-exon-sc0000237-1510915933:360758..360880TCONS_00016422-exon-sc0000237-1510915933:360758..360880Clytia hemisphaericaexon
TCONS_00016422-exon-sc0000237-1575043694:360758..360880TCONS_00016422-exon-sc0000237-1575043694:360758..360880Clytia hemisphaericaexon
TCONS_00016422-exon-sc0000237-1491911889:362088..362204TCONS_00016422-exon-sc0000237-1491911889:362088..362204Clytia hemisphaericaexon
TCONS_00016422-exon-sc0000237-1510915933:362088..362204TCONS_00016422-exon-sc0000237-1510915933:362088..362204Clytia hemisphaericaexon
TCONS_00016422-exon-sc0000237-1575043694:362088..362204TCONS_00016422-exon-sc0000237-1575043694:362088..362204Clytia hemisphaericaexon
TCONS_00016422-exon-sc0000237-1491911889:362549..362739TCONS_00016422-exon-sc0000237-1491911889:362549..362739Clytia hemisphaericaexon
TCONS_00016422-exon-sc0000237-1510915933:362549..362739TCONS_00016422-exon-sc0000237-1510915933:362549..362739Clytia hemisphaericaexon
TCONS_00016422-exon-sc0000237-1575043694:362549..362739TCONS_00016422-exon-sc0000237-1575043694:362549..362739Clytia hemisphaericaexon
TCONS_00016422-exon-sc0000237-1491911889:364039..365221TCONS_00016422-exon-sc0000237-1491911889:364039..365221Clytia hemisphaericaexon
TCONS_00016422-exon-sc0000237-1510915933:364039..365221TCONS_00016422-exon-sc0000237-1510915933:364039..365221Clytia hemisphaericaexon
TCONS_00016422-exon-sc0000237-1575043694:364039..365221TCONS_00016422-exon-sc0000237-1575043694:364039..365221Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000237supercontigsc0000237:353292..365221 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
8.55472	11.193	1.41305	2.66639	0.148836	0.215292	2.70666	0.196464	0.0636866	0	0.000282628	4.64206e-08	0	0.0099417	0	0	9.70536e-06	1.61386e-07	1.76831e-09	0	5.00784	1.40458	3.74988	4.94357	0.17859	1.08586	7.05238	4.81835	15.3862	16.0437
Blast
[Close]
BLAST of TCONS_00016422 vs. Swiss-Prot (Human)
Match: TMCC1 (Transmembrane and coiled-coil domains protein 1 OS=Homo sapiens GN=TMCC1 PE=1 SV=3)

HSP 1 Score: 93.5893 bits (231), Expect = 1.111e-19
Identity = 115/351 (32.76%), Postives = 167/351 (47.58%), Query Frame = 1 
Query:    4 KKIDKTKDELVQMQATKDEYVKEYLKSADVDDSSETAIKNKMNFEKNNQKTNASIXXXXXXXXXXXXXXXXXXXRGI-HGPKRIIR------------------AVQDSVRSGASSITGA--------VSKP--LGSL--NNFMKKDKRNTSSDNVS-LHTSQTEDGMERMTNSMNNISDEDXXXXXXXXXXXXHHSDIDC-----GGMNENHPLHGIHF------TERINSQNEQIEDLVKENEEMRE-------GFTKMKDDMER----MLQSFQEERYKNEQLSNEVSDMYHQWHDLTELHQNEMSGLKQEMDQTLERIECMEYRFSERSGDIEEAIGGCETRITKME 894
            +KI K  +++   Q  +D+ V EYLK A+  D  + A + K  FEK NQK+  +I  LQKKLE Y  KL+ +E+ GI   PK + R                   V DSV+ G SS + A        VSKP  + SL  N F        S+DN+  L  S  E  ++    ++  IS+              + S+ DC     G +  N    GI        T  ++ Q+   + L+ E +E+RE        F  +K+  +R    ++Q+ QEERY+ E+L         Q +DLTELHQNE+  LKQE+    E+I    Y   ER+ DI+EA+  C+TRI+KME
Sbjct:  239 QKILKLTEQIKIAQTARDDNVAEYLKLANSADKQQAA-RIKQVFEKKNQKSAQTILQLQKKLEHYHRKLREVEQNGIPRQPKDVFRDMHQGLKDVGAKVTGFSEGVVDSVKGGFSSFSQATHSAAGAVVSKPREIASLIRNKF-------GSADNIPNLKDSLEEGQVDDAGKALGVISN--------FQSSPKYGSEEDCSSATSGSVGANSTTGGIAVGASSSKTNTLDMQSSGFDALLHEIQEIRETQARLEESFETLKEHYQRDYSLIMQTLQEERYRCERLE-------EQLNDLTELHQNEILNLKQELASMEEKIAYQSY---ERARDIQEALEACQTRISKME 563
The following BLAST results are available for this feature:
BLAST of TCONS_00016422 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TMCC11.111e-1932.76Transmembrane and coiled-coil domains protein 1 OS... [more]
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