TCONS_00016410 (transcript) - C. hemisphaerica

Overview
NameTCONS_00016410
Unique NameTCONS_00016410
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3390

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00016410 ID=TCONS_00016410|Name=TCONS_00016410|organism=Clytia hemisphaerica|type=transcript|length=3390bp
TCAGTACTAAATTATAAGAATTATAcgtaaaaaatcaataaaatgttGGA
GAAGCTACGAGAACAAGGTTGGCACCTATCAGAAGAAGGTTACCAGAAAT
GTGTAGCAGCCACTGGGCAGAAAGAACCTTCCTTATCTAAACTCACCACT
ACAGCTTTGGCAATGGATTTGAGACATATTGGGGACAAAATTCTTCCAGA
GAATATCAATTCTGGTCAAGTCCCCTCAATCGAAGGTCCAATAGTGATGC
AGATCCAGAAAATCAGGAATATTACCGCACCAACTATTAATCAAGATTCT
CAAGGTTCGCCAAGAATGATCAAGTTGAACCTTACAGATGGCGTGGTTCA
TTGTGTGGCAATCGAGTTTCAACAAATTGGTTGCCTGAAATTATCGATTG
TTCCTGGAACTAAATTATGCCTGCAAGGTACAATTCCTTTATCACATGGA
GTGTTGTTTTTGGAAGATCAGAATGTCAAAATGCTTGGCGGTGAAGTACA
GAAGATGAAAGAGAAATGGAACGCATCTAATTCACTGAAAAAGACGAcAT
CAAAGAAGACTTCTGACGCACCTCAATTTGTTGAGTTTGATCctaataaa
aaaactaaacgaAAAGGAGCTCCGAAGTATCAAGAAGAAGACACCACTAA
AGATTATTCAAAACCTCCTCAATCAAATCAAAGAAGCGAGGAACAACCAA
GAACTGATAatccaaaacaaaatcaaaacaaaccttctTACAACGATCGA
CCGAATACTGGTCCACAAACAAAAAGCCAACAAGGAGATAATACTAATCC
ACAGACAAAAGGGAAGCAATACGATTCAGCAAAAGAGAACAAGTCCACCC
AAAATTATAAGCAGAAGAATGATACAGATTCAAGAAAGTACGATAACAAT
ATTGGAAAATCTGGCGCTACTGCTCGCAAGGAGAAAGGAGATGCTCCACG
TGATCAGCATCAGAAAAATCGTGATTTTGGCAAGAATTCACGTGATTTTG
ATCGAGATTCACGTGACAATAAGTCGACTGGAAACCGTAAAGATGAGAAA
CAAATACCCGCtcaacaacaacgacaacaacaGTCAGGGAACAAAAAACA
GGACCAGAAGGAATTTGAGAAGGGGAGACAACAAGGAAAAGGGACATCAA
AGGGAAAAACAGAGGATGGTAAAAGATTTGATCGTCGAAATGATTACGTA
GATGACTATCGTCCTAATGATCGCAGTGATCGGCGCAACCAACGTGAAGA
TAGCAAAGATTACCGCCGTAATGATAGAGAAGATATAAAAAGTGATCGGC
AGAACCAACGAGAAGATAGCAAAGATTACCGCCGTAATGATAGGGAAGAT
ATAAAAAGTGATCGGCAGAACCAACGAGAGGACAGAAAAGATTTTCGCCG
TAATGAGAAGACAGATCGATCAAACCAACGAGAAGATAGCAAAGATAATC
GCCGTAATGAGAAGACAGATCGATCAAACCAACGAGAAGATAGCAAAGAT
AATCGCCGTAGTAACAACCAAGATATGAAAGGTGACCAGAGTCAGGATTA
CCGCCGTAATGATAGAGGAGATACAAGAAGTGATCGTCGCAATCAACAAC
AAGATACTAAAGATTATCGCCGTGATAATTATGAAGACTCAAGGGACAGT
CGGAAAGGTTATTACGAAGATAAGAAAGATACTCGCCGCAATGATCATGA
CGATAATAAATATCAACGTCGCGGTGAAAACCAAAAATTGGAAGGTAGCA
AAAAACCGTATCGTGAAGATAggaaagaaattgagaaacaaGGCCCAAAT
AAAGCCAAGGAAGAGGATAAAAAACGCCAAGATTACTCTAAGGAAAGCAA
ACAGGGCGCTTCTCAAGATATGAAGAAAGGTGAGCGTGGTCCTGGTCGCG
ATACAAAGAAGAAGATATACGAGGATGATAAAAGATACGATTCAAAGGAC
TTTAAGAAAGATCGGGAAGATAGATATACGCAACAGGGAGATGTCAGAAA
CGCCAAGTCTGATCGTAAAAACTATCGTGATGGCGGGTACTCCAAGGACA
GCGACAAACGTTGGGGGTATCAGGGCGATAGCAGATACACGAGTTACGAT
GATCGCGACTCTAAGAAGGGTCCTCAAGTTGGAAAGAAGTATAGTTATCG
TAGCGATAGATACGACGATTACGACTACGAATATGGTTACGACGACAGAG
ATTATTCGGGCAACGACAAGAAATCGCGTCACGGCAACAAGCAGTCAGGA
TATGGCAGCAAGCAAAATTATCGCGACGATACATACTATGACGATAGTAG
AGATTATTCGGGTAACGACAAGAAATCGGGTCACGGTGACAAGCAGTCAG
GTCATGTCAGCAAACAAAGTTATCGTGACGATAGATACTACGATGGTTAC
GATGATGGGTATTACAATGACCGTGgtagtaataaaaaaaattatgagcg
cAAGGATATTCAAAGAGATAAAGGCGGCAGCAAGAGGGATGATCATCAGA
GCGAGCGGAAACAAGACGTAAAGAAGGAATACCCTAATGGCAAACAAAGT
GACTATCATGGGCAGAAACAACAACTAGATCAAGTCAACCATAAATCTAC
TCATGAAAACGGAGGAAATACCAAACAATCAGATTCAGACCCTTCTCAAG
ATCAACGAAACCAAAACGAAGCCGCGACAAACCACTTAACACAAATGCTG
AAAACTAACTTAAACATCAACCAACCCAGCCCTCAACTACAATCCGCCCA
CCCACCACACATGCCTCCACCCGGCCTCACTGGCAACCCCCCGAATCCCT
CAAACTACGGTCTAACTGCAGAACAACAAATGATGTTATCAATGCATTAC
CAATATATGATGAATCCAAACATCACTGGAGCAGATTCTTCAAACTATCC
TCAACAACCACCAGGCTTCCAAATGAACCCCAACTTCAtgcaacaacagc
aacaacagtTCATGATGTATCAACAACACTTTCCGAATCAACGAcaacaa
aactttcaacaaaattctgGCCAACATCAACAGAAATTCCCTCCTGGGTT
TAATGAATATTCTCATCAAGGGCCGTGATTTTGAAATAGTCCTTTCTATG
GTTTTTCATTATGTTTGAAATATTAGGAATCGTGTTCAATAATCTTTTTT
TCTCGCTGCAAATAAATTATCTACTCGATTTCTCCCGTCATGAGTTTTTC
TCATTCTACctgtatttttttaataaacccTTTTTAGACACACAAGTCGA
TAAAGCTCTACTGTTTTCCTGATTTCTCTGTGCCTGAGAAGGAATTCTCA
TTTAGTAATTTTTGCACTTTAATATAttgaattttgtattttttcttgtT
GACAGTTGCATTTATTGACTCataattattgaaaatattg
Run BLAST on NCBI

transcript from alignment at sc0000237:181567..186641+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00016410 ID=TCONS_00016410|Name=TCONS_00016410|organism=Clytia hemisphaerica|type=transcript|length=5075bp|location=Sequence derived from alignment at sc0000237:181567..186641+ (Clytia hemisphaerica)
TCAGTACTAAATTATAAGAATTATAcgtaaaaaatcaataaaatgttGGA
GAAGCTACGAGAACAAGGTTGGCACCTATCAGAAGAAGGTTACCAGAAAT
GTGTAGCAGCCACTGGGCAGAAAGAACCTTCCTTATCTAAACTCACCACT
ACAGCTTTGGCAATGGATTTGAGACATATTGGGGACAAAATTCTTCCAGA
GAATATCAATTCTGGTTAGTCCTGTCAACCCTATTAAAATGTTTAATAGT
CGACTTGAGTACATTAAACCTTACCCTAATCCCTTCTAATGCAGTGGTTC
TTAGGTGCTTGGCTGTATTGGAAACGAATCCTACTTACAACtacagtcga
ctctctctaattcgaacttttataattcgaacctctataattcgaacctc
tatgaTTCAAACTAAAGCTTTGGTCCCTTCATCTGGATAGTAGTGCAAAA
TgtcctctataattcgaatctttctctaattcgatgagAACTTTTATtac
cccttgaagatcgaattagagagacgTAGCTGTAAAACAAAACTAGTGca
ttttttagaacttttctcTTGTTGTTCTCCGTAGGTCAAGTCCCCTCAAT
CGAAGGTCCAATAGTGATGCAGATCCAGAAAATCAGGAATATTACCGCAC
CAACTATTAATCAAGATTCTCAAGGTTCGCCAAGAATGATCAAGTTGAAC
CTTACAGATGGCGTGGTTCATTGTGTGGCAATCGAGTTTCAACAAATTGG
TTGCCTGAAATTATCGATTGTTCCTGGAACTAAATTATGCCTGCAAGGTT
TGTCTGGATTGTTTTTATGAATATTTAATGGACTTTGCTTTGATAAAAGT
CCCGCCTCGAAGTTTTCCAACTTTTAGAAACATTGCTTTGGCTTTTTCTG
TTTTTACAACCCTATAAATCCtggaaaattctaaatatggtCATACTTCT
AAAATACATTAGTTTTCACCTTTGTTGAGTTAAAATTGGACAATCTTTGA
GGGtataattatttcaattttctttttacacaATGCTGTTCTAGCCTAAG
AAAGAGTTTTCACAGCTGCTACAGCTCTGATTAGCTTCTCGGTATTTGAT
TTTTCAGGTACAATTCCTTTATCACATGGAGTGTTGTTTTTGGAAGATCA
GAATGTCAAAATGCTTGGCGGTGAAGTACAGAAGATGAAAGAGAAATGGA
ACGCATCTAATTCACTGAAAAAGACGAcgtgaattttttatttcatttga
ttttaatttcgaATGGAGAAGAAGGCCCTTGAATTGATCTGGATGGAAGA
TCTGTTAGAATCTTTTGATTAATTGGATTCTTATAACCAAGAACAACCCC
TTTATGATCAAGGGTTCCCAATGATATTGTTCCATTTCTGAGTCAGGTGT
CCCCATGTAATAGACAGATTTCAAGGACAGAGTCTCCATTTTCTAAGACA
AAAGTGTACGTACGACTGATGGAGTTTGGAAGTATGTAAACTTTCACTCG
TGAAGGATagttaaaaaaggaaaatattttttaccagTTGATAATCAAGA
AAATCTAAATTCATAAATTTACCTAAATTGTCCATCAGCAGGCAAATCAT
TCGTTTTGTTCTTCTCTTAGATCAAAGAAGACTTCTGACGCACCTCAATT
TGTTGAGTTTGATCctaataaaaaaactaaacgaAAAGGAGCTCCGAAGT
ATCAAGAAGAAGACACCACTAAAGATTATTCAAAACCTCCTCAATCAAGT
ACAATTCAAGTTTTATTATTTGGTATCTCGATTAGAATAATGCCCGTTGC
TACCTTAagagaattaatttttttgggaactaattttcacttttttcgcg
ttttttaggcaaaatcgcgaaaatttggaCCTGCGAAAAACAGTTTTtgc
caattttatcgaaaaaattcaaaaaaggacAAAACCGCCATTTTATCAGC
CTCCGTTATAGTTGTAGCTCaaaccaaattttcaaaatgaagagtAAAGG
ATTTCTGTTAGAGGAGTTTAAGACTTTCATTTTAGAGCTTAAATTTTCTT
GAACGTTCTTCATTTTAAACCTCAAACGGTTTCTGTAAATCTCAATTCAT
TTTCAGATCAAAGAAGCGAGGAACAACCAAGAACTGATAatccaaaacaa
aatcaaaacaaaccttctTACAACGATCGACCGAATACTGGTCCACAAAC
AAAAAGCCAACAAGGAGATAATACTAATCCACAGACAAAAGGGAAGCAAT
ACGATTCAGCAAAAGAGAACAAGTCCACCCAAAATTATAAGCAGAAGAAT
GATACAGATTCAAGAAAGTACGATAACAATATTGGAAAATCTGGCGCTAC
TGCTCGCAAGGAGAAAGGAGATGCTCCACGTGATCAGCATCAGAAAAATC
GTGATTTTGGCAAGAATTCACGTGATTTTGATCGAGATTCACGTGACAAT
AAGTCGACTGGAAACCGTAAAGATGAGAAACAAATACCCGCtcaacaaca
acgacaacaacaGGCAGGGAACANCAAAGATGAGAAACAAACACCCGCtc
aacaacaacgacaacaacaGTCAGGGAACAAAAAACAGGACCAGAAGGAA
TTTGAGAAGGGGAGACAACAAGGAAAAGGGACATCAAAGGGAAAAACAGA
GGATGGTAAAAGATTTGATCGTCGAAATGATTACGTAGATGACTATCGTC
CTAATGATCGCAGTGATCGGCGCAACCAACGTGAAGATAGCAAAGATTAC
CGCCGTAATGATAGAGAAGATATAAAAAGTGATCGGCAGAACCAACGAGA
AGATAGCAAAGATTACCGCCGTAATGATAGGGAAGATATAAAAAGTGATC
GGCAGAACCAACGAGAGGACAGAAAAGATTTTCGCCGTAATGAGAAGACA
GATCGATCAAACCAACGAGAAGATAGCAAAGATAATCGCCGTAATGAGAA
GACAGATCGATCAAACCAACGAGAAGATAGCAAAGATAATCGCCGTAGTA
ACAACCAAGATATGAAAGGTGACCAGAGTCAGGATTACCGCCGTAATGAT
AGAGGAGATACAAGAAGTGATCGTCGCAATCAACAACAAGATACTAAAGA
TTATCGCCGTGATAATTATGAAGACTCAAGGGACAGTCGGAAAGGTTATT
ACGAAGATAAGAAAGATACTCGCCGCAATGATCATGACGATAATAAATAT
CAACGTCGCGGTGAAAACCAAAAATTGGAAGGTAGCAAAAAACCGTATCG
TGAAGATAggaaagaaattgagaaacaaGGCCCAAATAAAGCCAAGGAAG
AGGATAAAAAACGCCAAGATTACTCTAAGGAAAGCAAACAGGGCGCTTCT
CAAGATATGAAGAAAGGTGAGCGTGGTCCTGGTCGCGATACAAAGAAGAA
GATATACGAGGATGATAAAAGATACGATTCAAAGGACTTTAAGAAAGATC
GGGAAGATAGATATACGCAACAGGGAGATGTCAGAAACGCCAAGTCTGAT
CGTAAAAACTATCGTGATGGCGGGTACTCCAAGGACAGCGACAAACGTTG
GGGGTATCAGGGCGATAGCAGATACACGAGTTACGATGATCGCGACTCTA
AGAAGGGTCCTCAAGTTGGAAAGAAGTATAGTTATCGTAGCGATAGATAC
GACGATTACGACTACGAATATGGTTACGACGACAGAGATTATTCGGGCAA
CGACAAGAAATCGCGTCACGGCGACAAGCAGTCAGGACATGGCAACAAAC
AAAGTTATCGCAACGATGCATACTATGACAACAGAGATTATTCGGGCAAC
GACAAAAAATCGGGTCACGGCAACAAGCAGTCAGGACATGGCAGCAAACA
AAGTTATCGCGACGATACATACTATGATGATAAAGATTATTCGGGTAACA
ACAAGAAATCAGGTCACGGCAACAAGCAGTCAGGATATGGCAGCAAGCAA
AATTATCGCGACGATACATACTATGACGATAGTAGAGATTATTCGGGTAA
CGACAAGAAATCGGGTCACGGTGACAAGCAGTCAGGTCATGTCAGCAAAC
AAAGTTATCGTGACGATAGATACTACGATGGTTACGATGATGGGTATTAC
AATGACCGTGgtagtaataaaaaaaattatgagcgcAAGGATATTCAAAG
AGATAAAGGCGGCAGCAAGAGGGATGATCATCAGAGCGAGCGGAAACAAG
ACGTAAAGAAGGAATACCCTAATGGCAAACAAAGTGACTATCATGGGCAG
AAACAACAACTAGATCAAGTCAACCATAAATCTACTCATGAAAACGGAGG
AAATACCAAACAATCAGATTCAGACCCTTCTCAAGATCAACGAAACCAAA
ACGAAGCCGCGACAAACCACTTAACACAAATGCTGAAAACTAACTTAAAC
ATCAACCAACCCAGCCCTCAACTACAATCCGCCCACCCACCACACATGCC
TCCACCCGGCCTCACTGGCAACCCCCCGAATCCCTCAAACTACGGTCTAA
CTGCAGAACAACAAATGATGTTATCAATGCATTACCAATATATGATGAAT
CCAAACATCACTGGAGCAGATTCTTCAAACTATCCTCAACAACCACCAGG
CTTCCAAATGAACCCCAACTTCAtgcaacaacagcaacaacagtTCATGA
TGTATCAACAACACTTTCCGAATCAACGAcaacaaaactttcaacaaaat
tctgGCCAACATCAACAGAAATTCCCTCCTGGGTTTAATGAATATTCTCA
TCAAGGGCCGTGATTTTGAAATAGTCCTTTCTATGGTTTTTCATTATGTT
TGAAATATTAGGAATCGTGTTCAATAATCTTTTTTTCTCGCTGCAAATAA
ATTATCTACTCGATTTCTCCCGTCATGAGTTTTTCTCATTCTACctgtat
ttttttaataaacccTTTTTAGACACACAAGTCGATAAAGCTCTACTGTT
TTCCTGATTTCTCTGTGCCTGAGAAGGAATTCTCATTTAGTAATTTTTGC
ACTTTAATATAttgaattttgtattttttcttgtTGACAGTTGCATTTAT
TGACTCataattattgaaaatattg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009166XLOC_009166Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00016410-exon-sc0000237-1491911889:181567..181780TCONS_00016410-exon-sc0000237-1491911889:181567..181780Clytia hemisphaericaexon
TCONS_00016410-exon-sc0000237-1510915933:181567..181780TCONS_00016410-exon-sc0000237-1510915933:181567..181780Clytia hemisphaericaexon
TCONS_00016410-exon-sc0000237-1575043694:181567..181780TCONS_00016410-exon-sc0000237-1575043694:181567..181780Clytia hemisphaericaexon
TCONS_00016410-exon-sc0000237-1491911889:182151..182363TCONS_00016410-exon-sc0000237-1491911889:182151..182363Clytia hemisphaericaexon
TCONS_00016410-exon-sc0000237-1510915933:182151..182363TCONS_00016410-exon-sc0000237-1510915933:182151..182363Clytia hemisphaericaexon
TCONS_00016410-exon-sc0000237-1575043694:182151..182363TCONS_00016410-exon-sc0000237-1575043694:182151..182363Clytia hemisphaericaexon
TCONS_00016410-exon-sc0000237-1491911889:182674..182794TCONS_00016410-exon-sc0000237-1491911889:182674..182794Clytia hemisphaericaexon
TCONS_00016410-exon-sc0000237-1510915933:182674..182794TCONS_00016410-exon-sc0000237-1510915933:182674..182794Clytia hemisphaericaexon
TCONS_00016410-exon-sc0000237-1575043694:182674..182794TCONS_00016410-exon-sc0000237-1575043694:182674..182794Clytia hemisphaericaexon
TCONS_00016410-exon-sc0000237-1491911889:183187..183314TCONS_00016410-exon-sc0000237-1491911889:183187..183314Clytia hemisphaericaexon
TCONS_00016410-exon-sc0000237-1510915933:183187..183314TCONS_00016410-exon-sc0000237-1510915933:183187..183314Clytia hemisphaericaexon
TCONS_00016410-exon-sc0000237-1575043694:183187..183314TCONS_00016410-exon-sc0000237-1575043694:183187..183314Clytia hemisphaericaexon
TCONS_00016410-exon-sc0000237-1491911889:183673..184079TCONS_00016410-exon-sc0000237-1491911889:183673..184079Clytia hemisphaericaexon
TCONS_00016410-exon-sc0000237-1510915933:183673..184079TCONS_00016410-exon-sc0000237-1510915933:183673..184079Clytia hemisphaericaexon
TCONS_00016410-exon-sc0000237-1575043694:183673..184079TCONS_00016410-exon-sc0000237-1575043694:183673..184079Clytia hemisphaericaexon
TCONS_00016410-exon-sc0000237-1491911889:184137..185280TCONS_00016410-exon-sc0000237-1491911889:184137..185280Clytia hemisphaericaexon
TCONS_00016410-exon-sc0000237-1510915933:184137..185280TCONS_00016410-exon-sc0000237-1510915933:184137..185280Clytia hemisphaericaexon
TCONS_00016410-exon-sc0000237-1575043694:184137..185280TCONS_00016410-exon-sc0000237-1575043694:184137..185280Clytia hemisphaericaexon
TCONS_00016410-exon-sc0000237-1491911889:185479..186641TCONS_00016410-exon-sc0000237-1491911889:185479..186641Clytia hemisphaericaexon
TCONS_00016410-exon-sc0000237-1510915933:185479..186641TCONS_00016410-exon-sc0000237-1510915933:185479..186641Clytia hemisphaericaexon
TCONS_00016410-exon-sc0000237-1575043694:185479..186641TCONS_00016410-exon-sc0000237-1575043694:185479..186641Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000237supercontigsc0000237:181567..186641 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
6.0092e-10	0.295156	0	0	0	0	0	0	0.271358	0	0	0.131886	1.22935e-09	0	0.295348	0	0.261987	0.314982	0	0	0	0	0	0	0	0	0	9.94252e-05	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00016410 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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