TCONS_00016383 (transcript) - C. hemisphaerica

Overview
NameTCONS_00016383
Unique NameTCONS_00016383
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length610

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00016383 ID=TCONS_00016383|Name=TCONS_00016383|organism=Clytia hemisphaerica|type=transcript|length=610bp
CTTGTACGTTAAGTTATACCAATGAAAATTAAGTGTTTTTAAGCCAGGGC
CAACTTTGCAGTTCAGAACTAACCCCTTTATCATTCTCTCAAACGTTATT
TCTAAATGCAAACCAAAGAATTAACCATAAAAAATAAACTATACACACTA
GCAATCCTGAATTTCTAGCAAAAATTgtatatcaaaaattttgaacattg
aaaaattaacaatatTTGTATGAAAAATTAAGTCTACAGCGTGTCCGGAA
ATAAAGTAGGCAAGAAAGAGATTATGTAATAGATATTCCATACCCTAGGA
AATTCAATATGTTAGTacgcgtttttttatgagagcaaactatataagaa
catagggcttcgatgactctaaaacacccaatttcttaggaaaacaaaat
actcaaaaaaatgtgaaaataagaacatgttaagaacatttttaagctta
agaCTAAAAGAgtcgaagacttcaaaaatttcggatgttcttataaaaaa
acgtgtaaactgGAATCTAGTTATTAagacataaaaaaaattaacattca
aACGTTAAGACGATTTTCATCTTTTAACAAATTATGTCCAATTTCCCCCC
CAGACACACT
Run BLAST on NCBI

transcript from alignment at sc0000233:44210..44819

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00016383 ID=TCONS_00016383|Name=TCONS_00016383|organism=Clytia hemisphaerica|type=transcript|length=610bp|location=Sequence derived from alignment at sc0000233:44210..44819 (Clytia hemisphaerica)
AGTGTGTCTGGGGGGGAAATTGGACATAATTTGTTAAAAGATGAAAATCG
TCTTAACGTttgaatgttaattttttttatgtctTAATAACTAGATTCca
gtttacacgtttttttataagaacatccgaaatttttgaagtcttcgacT
CTTTTAGtcttaagcttaaaaatgttcttaacatgttcttattttcacat
ttttttgagtattttgttttcctaagaaattgggtgttttagagtcatcg
aagccctatgttcttatatagtttgctctcataaaaaaacgcgtACTAAC
ATATTGAATTTCCTAGGGTATGGAATATCTATTACATAATCTCTTTCTTG
CCTACTTTATTTCCGGACACGCTGTAGACTTAATTTTTCATACAAatatt
gttaatttttcaatgttcaaaatttttgatatacAATTTTTGCTAGAAAT
TCAGGATTGCTAGTGTGTATAGTTTATTTTTTATGGTTAATTCTTTGGTT
TGCATTTAGAAATAACGTTTGAGAGAATGATAAAGGGGTTAGTTCTGAAC
TGCAAAGTTGGCCCTGGCTTAAAAACACTTAATTTTCATTGGTATAACTT
AACGTACAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009145XLOC_009145Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00016383-exon-sc0000233-1491911889:44210..44819TCONS_00016383-exon-sc0000233-1491911889:44210..44819Clytia hemisphaericaexon
TCONS_00016383-exon-sc0000233-1510915933:44210..44819TCONS_00016383-exon-sc0000233-1510915933:44210..44819Clytia hemisphaericaexon
TCONS_00016383-exon-sc0000233-1575043694:44210..44819TCONS_00016383-exon-sc0000233-1575043694:44210..44819Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000233supercontigsc0000233:44210..44819 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.41557	0.693277	1.00174	0.893276	0.715866	0.197171	0.457487	0.319464	0.372773	0.554088	0.563487	0.593034	0.592414	0.54996	0.351666	0.485218	0.199249	0.204224	0	0.590493	0.59992	0.500686	0.405766	0.922251	0.0949897	0.508656	0.485257	0.38841	0.492284	0.618774
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00016383 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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