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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00016235 ID=TCONS_00016235|Name=TCONS_00016235|organism=Clytia hemisphaerica|type=transcript|length=2669bp
cattAGTTAAGAAAAAGATGAAATCTTTTAACATTACTATAATACATtga
tgaaaatatgaaatgagTAATGGAAATGAACCAATTTAAGATCATCATTG
CTTAAACATTTTCCAGTAATCACCTCTATGATAGAGAAATGTCGGGCTGG
TTGTTAAAACAATTAGTACCAACGGATGAAAATCCCATAAGCCGTGATGT
TAAAGATGTTGTCGCGATGAATTTGAATGTTGACTGGAAGAAATTTGCAT
ACGGAATTATGTCAGATCAAGATATAGAAAGAATTGACCTTGACAATCGA
ACTGTATATGAGAAATGCTTTGAAATGTTGAACAAATGGACTGAATCGAA
CCCTCATGAGATAACAAATGCCATATTGAAACTGAAATTAAATGAAATGC
AGAGAAGAGACATTCTAATGGACATTGCCGACAAGGTTCCATCTTTTGGG
AGAGTGAAATTTCCAGACGAGCCTACCAGAAGTTATGAGGAGCCGAGACA
ACcacaacaaccacaacaaccGCAACAACCGCAGCAGCCAGCAAGGCAAG
AGAACCTTTATGAGAGAGATGGAGAGTTTTACGTGACTGATCTGTCCTTA
AGAGACACCGATGAACTGGCAACCAAGCTAGATGTCACTTACGGTGCTGG
TATATCAAACTGGAAGAATGTTGCTCACGAACTAATCGGCCGAGATTCAG
AGCTattttatcaaatcaaagaCTTAGACCTGCATTATTATGGAGGGGGG
AATCCAgcattggaattttttaaacagTTAGCTATGAAAGAACCTGATGT
CACTATCCGGCAATTCCAAAGTATTTGTAAAGAATTTCAGAGAATGGATA
TGTCGCTTTACATCGATCAAAAATTAAGTAATAATCTGGACGGGTTTGTA
CGAGATTTGCAGAGTCAGCACAAAGAACGACTAGCGAGTTACATGAATTT
AAATATACCAGGTGTTTATGACTGGGAAATGTTTGCTGACGAATACGGTT
TCAATAGACAACAAATTAATTTGATGCGAGCAGCTCTTAAAGAAGGTGGC
AGTTTTAGTCCGACCAAAAAATTGGTTGAATTGTTACAACAATCAAGACC
CTTAACAACTCTTGAAGAGATCAAAAGAGCATGCGCTAAACTGGGTCGGA
ATGATGTCGTCCTTGTATTGAATAAAGCGATTGagaaaaagaaacaaagg
aTGACGTAATGTTTGTTCGATTTGCTTTAGTTAGAGGAGATTACTACGGG
GTAGCGAGCACTCGCCAACGGAAAAGGATTATCTTCCCATAGGTAAGACA
CTTGAACCTCCACTGTTAGAGACCACCTTATCAACGGTTACCTTTAACTG
CGAAGAGTTTCAAAGCGTGCTAACTGCAAATGAGTatgaataattttgat
ttttcattgtCAAACCATGCGATACTTAACATTAGATTTTGACCATTATA
AACTTCTATATCTTTTCTGTTACACATTTATGCACAATCAGCCTTTTGGT
AACCTATCGTACATTAAAAGACTGTTGTACTGCAAGAAATTGCTTAAGTT
TTGCTTAGGTTTTACTTTCGAAGAGGGCCATTTAAAgcgtgtccgaaaaa
aaaagagGAACAGATTTATGTATTATAAGTATTTATCTttatatataaag
taaaatctttatgtaatagttatcggacagttgcgagtacaatatgagaa
atattttacgagttcccagattttccgtacaatattttccgagcctttag
gcgaggaaaatatacggaaaatccggaacgaataaaatatttctcatatt
gtacgagcgtcaatttatatttaatttaatatttaaaggttttgttttta
aataagagttgTTTACTCatcaagctttttcacattggattgacagggat
gtggagcaagattggtcagaaaaaggaaaagaaactgCTTATaccagcat
aatataacaataggcagaNggttttgtttttaaataagagtgatatcatt
tgcttactcatcaagctttttcacattggattgacagggatgtggagcaa
gattggtcagaaaaaggaaaagaaactgCTTATaccagcataatataaca
ataggcagagactttcctgatatgaaatatgtttctgatatgaaacggga
acacttatataaaaataaaacctttaatcaaATATCTACTGATTGAACga
aacaaaatttcattttattatgATAAATTCAAACTTCAATGATTTTgata
actgttttttttttttgttccacATTTTTCCGGACACAACTCatagaaaa
acatcaaaaagcttacattctttttataagcatttcaCTTATATGCATCG
CACTTTTGTGTATATCTAGGCTCAGAAATTCAAGCTTATGTGAAGCATTT
ACCCGAGcctaaatttttcgattttggctattttttgctggaattttagg
gattttttcgaattttcctaAGATTTTGCTTAATATTTAAACATCCTTCT
AGCATTTTTTAGCCTTGTCCGGCTCTCGATATAATGTATGCTTTAAAAAT
AGCATGTAGACTTTTTTAATTATATCACatcttcttaatatttttgttcC
GTATAATTGTAAgcaattataaagaaaaaagtgtaaaatttgaaaaaagg
gtTAATAATAAAAGAGGGg Run BLAST on NCBI transcript from alignment at sc0000231:393312..400315- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00016235 ID=TCONS_00016235|Name=TCONS_00016235|organism=Clytia hemisphaerica|type=transcript|length=7004bp|location=Sequence derived from alignment at sc0000231:393312..400315- (Clytia hemisphaerica)
CATTAGTTAAGAAAAAGATGAAATCTTTTAACATTACTATAATACATTGA
TGAAAATATGAAATGAGTAATGGAAATGAACCAATTTAAGATCATCATTG
CTTAAACATTTTCCAGTAATCACCTCTATGATAGAGAAATGTCGGGTATG
TATTCTTGATATAGTGTAACTTATGAAATTATGCAGTTCTTGCCCAAAAC
ATCTCCTTTCTATCGCTTTCAAGAGTTTTGAGATATTCTGCGTGTAAATT
CCTCTGAATCAATTTCTACTTTTTTTTCCGAAATAAAGATCTTCAATCAA
GTCAAGCTATTATCTTTTAGCAAGAAAAGAAGTTCTCATAACCCGGCAAG
AACCTATTAGACCCAGAGAAGGGGGTTGGACCCAGAGAAGTGGGTCAGTA
CTAAAATCTCAGACTTATATAATGAAGACTAAAAGAGCAAGTTTCCCTTT
TAAACCAACGTTTTGATATTTTATTATCAAATGATACTAAAATACTTGCA
AGACTAATTCACCACGTGACTAAACGTCATGATATCTGAGATTTTAGTAC
TGACTCTACTCCCCTGTTTAACATAATAAAATGAGAAATATCTACATGAT
TCTCTGGTAATATCTAATTCATATTTTTTTTACTGTTTAAAGGCTGGTTG
TTAAAACAATTAGTACCAACGGATGAAAATCCCATAAGCCGTGATGTTAA
AGATGTTGTCGCGATGAATTTGAATGTTGACTGGAAGAAATTTGCATACG
GAATTATGTCAGATCAAGATATAGAAAGAATTGACCTTGACAATCGAACT
GTATATGAGAAATGCTTTGAAATGTTGAACAAATGGACTGAATCGAACCC
TCATGAGATAACAAATGCCATATTGAAACTGAAATTAAATGAAATGCAGA
GAAGAGACATTCTAATGGACATTGCCGACAGTAAGTGATATTATTGAGTT
TAAAGCCCTGAAAAGGACTAGAGATGAATCTTCAACCTTTTTCAAGCATG
AAAAAGTGAAACCTTAAGATTTGCGTCGCATTTCGAAATTTTGTTTGAAA
AACACACGGGTCACGTGTTCAGGCTAGGAAGTAAGTATCTTCGTCTCCCA
AACTCACATATCACAATCAATCCGCAATGGGGAAAACTCTCTAAAAAGAG
AGTACACGTTTTTTTTAAGAAACTAGTTTTACCAAGTAGCCTCAACGTTT
CTTAAGAAATCGGCCTTTTGAGCCTTAAATGTTTCTTACATGTTTCTAAA
CTTTTTGACACAATCAGCCTATTTTTCATGCAAAAAAAAATTGTTTTGAT
TGGAAGGTTCTTAAAAACAACCGAATTAAAAAATGTCATTTTCTCATTCT
CAGCCTCAGCATGTTTCTTATTTTTTAGGCATTCTGAGCCTCGTGTTTCT
TAAAAGTGTGTTTCTTAAAAATAAAAAAAACGTGTAACGCCTCAATACCA
ACATCACATTTATTATTAACCACTCTTGTGTTTCGGATCTAGCTCCTTCA
GGGCTTTGAAATCAATGAGTAATACACTATTTACTCTACTGTTTTATTTT
GAATTTAAAGTCTGTGGATACTGTACACGTAAAAATTTATACACCGTTGG
AAAGATTTTTTTGGAGGCATATAATCTAAAAGATCAAAGATTTTTGAGAA
ATTGAAAATTGGAGATGAAAAAAGAAGATGGAAAAAATGAAGATAGACAG
TTTCAGTCAGACTTAAGAAATATAATATGGCTCCCAATGTTTGACAATAA
AGTTCTGCCCGTGAGGGAGTAGAAATGAGATTATTGCCAACCATTACAAT
CTGTCTAACATTGGCTTGCATTGACAGTTCAACGACATTGTAGTAACCAT
TTTCTCAAAGGACTATTTCCAAATTTTTCTTACAAATAGAAAGAACTATT
GCTACACTCTTGATATTAGTATTTATAATCTGATGTATACAGGATACAGG
ATACAGGACGAAGATACAGAATGTATACGGGTTTGATCCGCGAATACAAT
TTTGGACTAAGAAAAACTGTTGGAAATTTCGAATTTAGCGCTTTTCTCAC
TAAGATAGAAAACAAATGCGTTTTTTTTCTAAGATAGTGTGACCAGTGAA
ATAATGATATAATTCCATTTACTGTCTTATCAATTGTTTTTTTGGAGGTG
GGAAATTCATAGAAACCAAATTCAACTCGTATAGCTCAAACCATGCAATT
AATTTCAAAATTTGTATATGAGAAAAGAAATTATAACATGGGTATGACCC
TTCTTTCTCTGTGTGCAGGCTAAAATTATTGCTACAGATTTTTAGGCCTT
ACTCTTGAGTAGGAGTTTTACGCTCGAAACGAAGGAAGATATGACGTAGC
CTAAGATTGTCATATTATGTATGCTTCTTAGAATTTAATAGAGGAATGTT
TACATACCGTTGGTTAAAAAAATGTGATTATAATATTAGTTTTGTACTTG
TGTTATGTCAATGTATAATAAGTTTGAACATGCATACACGGATGCTCTAA
CTATTTTGTCAACTTTTTTAATTACTCATGACATTCGGCTTTTTCTGAGA
AATAGGAAAGTCAAAAATGAAATTCAATAATTCAAAGGAATCTATATGAT
GAAAAAAATGGTCGAAATACTTATCAATCATGGAATGTAGGCCTTTATGT
AGTGTTGTCTATTCCTTCATATTTTTTTTAAAAACCAAGTATAAGTTGTG
GTTTGTTGCTGTTTGTGTAAAGTGGTGCATTTTGTTGTTGTTTTGTTGTT
GGTGTTTACTTAGGATTTTGGTTTAATTAATGTTGTCTTTCGAAGAGTGC
TGTATGAAAAATAAAAGTTTTAGTTATAGAAAACTGTTAACTTCGTGGCT
TCACTTTTTTTCTGGCCATACATAAGGTATCATTCAGTAGCAAAAACACC
ATCAAATAAGAAATATACAAACACAACACAATAAACATAGACGGCCTAAG
ATCTTTTTATATCGTCCAATATATATAAGGTATCATTCCATACAGCACGC
TGATTTCTCACCATTTTAGAGGTTCCATCTTTTGGGAGAGTGAAATTTCC
AGACGAGCCTACCAGAAGTTATGAGGAGCCGAGACAACCACAACAACCAC
AACAACCGCAACAACCGCAGCAGCCAGCAAGGCAAGAGAACCTTTATGAG
AGAGATGGAGGTAATAAAGGTAAAATATAATGTGATATGGAAAATTGCAT
GTTAATTGCAAATATTAATTACATATTCTTAAGGAGCGATAGCCAAGTGG
TCAAAGGCGTCAGCGTTTCAAACTAGGGATTTGTGTTTTGTCGCCCCTTC
CAATGTTCCGTTCAGCTCATAGATAGCCGAGCCGGCTAGCCGTGGCCCCG
TGAAAACAATTGAATAACTTCTGAAAGTTATAGATTACTGGGCTATCCAC
GTTAAATATCGACTCTGTCTATCTATCTATGTCTCTATTTGTTTTATATA
ATGTTCTTTTCATATTTATTTATACTGTCGACCCCTCATTTAATGCAGAT
AATACCCGGGGGGTACTAGGTTTGCGAGGTGACGGGTATGTCCGNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCCCCCCCCGGGAG
ATAATGTTAGTTAGAGGTGTCTAAAAAGTTCAGGGGTAATTCTCAATCAA
TCTGTTCTATATCCGTTACTTTTTTCTTATTTAGTTATACAGTGACCTCC
CCCCTCTGAGATGACAATTTTGAAATTGACTAAAAAGTTCTGGAGTTATT
CAATCCATGATCAATCATTTTTAGAAATATATCTCAATCTAGTTTTTTGT
CAACATGATCCAATTTCTTTGCAAATTGTTGCATTTGTTTTTCTACTCGA
TTCTTTCCAGTATTAAGGTGTCATGGGCAACCCTGGAAAAAAATATCAGG
AGTTAAAATCAAAAAGATATGTTGTAAATTACCATCTATAAGTTTCCCAA
AGTTGACGTTGTTAACTACAGTACAAATACATTAGAACCATTTCCTTTTA
ATTAATGAACCCATTTTAATGTTGATTATTGTAAACAAGTTGTCTAGTCT
AATAGACTAATGAGTAGTTAAGCCATTATTAACATGAGATAATTTAAATT
CAATGCTTTTACAGGTCTTTTAACATAAAGATAAAGCTTACCGAAAAAAA
TTATCATGGGTCTTTTTTAAAGTAGTGTACTACGTTGCTTTTTACTTTCA
ATTTTATGTATGTTGAAAAACTTGAAATTTAGGAACATAATGTTGAAAAT
AGGCAGTAGAGACTTTGTCAAACATTTCAGCTGAAAGAATTGGAATGTTT
GTTGTGGAAGGGGGTTGAAGTTTGAATGTATGAAATTTTAGTTTTCTAAC
TTTATAAAATGACTGTTCCATAAACTACTGTGTTGTTTTCTTTGTTTCTT
TTTCATAAGAGTTTTACGTGACTGATCTGTCCTTAAGAGACACCGATGAA
CTGGCAACCAAGCTAGATGTCACTTACGGTGCTGGTATATCAAACTGGAA
GAATGTTGCTCACGAACTAATCGGCCGAGATTCAGAGCTATTTTATCAAA
TCAAAGACTTAGACCTGCATTATTATGGAGGGGGGAATCCAGCATTGGAA
TTTTTTAAACAGTTAGCTATGAAAGAACCTGATGTCACTATCCGGCAATT
CCAAAGTATTTGTAAAGAATTTCAGAGAATGGATATGTCGCTTTACATCG
ATCAAAAATTAAGTAATAATCTGGACGGGTTTGTACGAGATTTGCAGAGT
CAGCACAAAGAACGACTAGCGAGTTACATGAATTTAAATATACCAGGTGT
TTATGACTGGGAAATGTTTGCTGACGAATACGGTTTCAATAGACAACAAA
TTAATTTGATGCGAGCAGCTCTTAAAGAAGGTGGCAGTTTTAGTCCGACC
AAAAAATTGGTTGAATTGTTACAACAATCAAGACCCTTAACAACTCTTGA
AGAGATCAAAAGAGCATGCGCTAAACTGGGTCGGAATGATGTCGTCCTTG
TATTGAATAAAGCGATTGAGAAAAAGAAACAAAGGATGACGTAATGTTTG
TTCGATTTGCTTTAGTTAGAGGAGATTACTACGGGGTAGCGAGCACTCGC
CAACGGAAAAGGATTATCTTCCCATAGGTAAGACACTTGAACCTCCACTG
TTAGAGACCACCTTATCAACGGTTACCTTTAACTGCGAAGAGTTTCAAAG
CGTGCTAACTGCAAATGAGTATGAATAATTTTGATTTTTCATTGTCAAAC
CATGCGATACTTAACATTAGATTTTGACCATTATAAACTTCTATATCTTT
TCTGTTACACATTTATGCACAATCAGCCTTTTGGTAACCTATCGTACATT
AAAAGACTGTTGTACTGCAAGAAATTGCTTAAGTTTTGCTTAGGTTTTAC
TTTCGAAGAGGGCCATTTAAAGCGTGTCCGAAAAAAAAAGAGGAACAGAT
TTATGTATTATAAGTATTTATCTTTATATATAAAGTAAAATCTTTATGTA
ATAGTTATCGGACAGTTGCGAGTACAATATGAGAAATATTTTACGAGTTC
CCAGATTTTCCGTACAATATTTTCCGAGCCTTTAGGCGAGGAAAATATAC
GGAAAATCCGGAACGAATAAAATATTTCTCATATTGTACGAGCGTCAATT
TATATTTAATTTAATATTTAAAGGTTTTGTTTTTAAATAAGAGTTGTTTA
CTCATCAAGCTTTTTCACATTGGATTGACAGGGATGTGGAGCAAGATTGG
TCAGAAAAAGGAAAAGAAACTGCTTATACCAGCATAATATAACAATAGGC
AGANGGTTTTGTTTTTAAATAAGAGTGATATCATTTGCTTACTCATCAAG
CTTTTTCACATTGGATTGACAGGGATGTGGAGCAAGATTGGTCAGAAAAA
GGAAAAGAAACTGCTTATACCAGCATAATATAACAATAGGCAGAGACTTT
CCTGATATGAAATATGTTTCTGATATGAAACGGGAACACTTATATAAAAA
TAAAACCTTTAATCAAATATCTACTGATTGAACGAAACAAAATTTCATTT
TATTATGATAAATTCAAACTTCAATGATTTTGATAACTGTTTTTTTTTTT
TGTTCCACATTTTTCCGGACACAACTCATAGAAAAACATCAAAAAGCTTA
CATTCTTTTTATAAGCATTTCACTTATATGCATCGCACTTTTGTGTATAT
CTAGGCTCAGAAATTCAAGCTTATGTGAAGCATTTACCCGAGCCTAAATT
TTTCGATTTTGGCTATTTTTTGCTGGAATTTTAGGGATTTTTTCGAATTT
TCCTAAGATTTTGCTTAATATTTAAACATCCTTCTAGCATTTTTTAGCCT
TGTCCGGCTCTCGATATAATGTATGCTTTAAAAATAGCATGTAGACTTTT
TTAATTATATCACATCTTCTTAATATTTTTGTTCCGTATAATTGTAAGCA
ATTATAAAGAAAAAAGTGTAAAATTTGAAAAAAGGGTTAATAATAAAAGA
GGGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00016235-exon-sc0000231-1575043694:400171..400315 | TCONS_00016235-exon-sc0000231-1575043694:400171..400315 | Clytia hemisphaerica | exon |
| TCONS_00016235-exon-sc0000231-1575043694:399386..399673 | TCONS_00016235-exon-sc0000231-1575043694:399386..399673 | Clytia hemisphaerica | exon |
| TCONS_00016235-exon-sc0000231-1575043694:397156..397296 | TCONS_00016235-exon-sc0000231-1575043694:397156..397296 | Clytia hemisphaerica | exon |
| TCONS_00016235-exon-sc0000231-1575043694:393312..395406 | TCONS_00016235-exon-sc0000231-1575043694:393312..395406 | Clytia hemisphaerica | exon |
| TCONS_00016235-exon-sc0000231-1510915933:400171..400315 | TCONS_00016235-exon-sc0000231-1510915933:400171..400315 | Clytia hemisphaerica | exon |
| TCONS_00016235-exon-sc0000231-1510915933:399386..399673 | TCONS_00016235-exon-sc0000231-1510915933:399386..399673 | Clytia hemisphaerica | exon |
| TCONS_00016235-exon-sc0000231-1510915933:397156..397296 | TCONS_00016235-exon-sc0000231-1510915933:397156..397296 | Clytia hemisphaerica | exon |
| TCONS_00016235-exon-sc0000231-1510915933:393312..395406 | TCONS_00016235-exon-sc0000231-1510915933:393312..395406 | Clytia hemisphaerica | exon |
| TCONS_00016235-exon-sc0000231-1491911889:400171..400315 | TCONS_00016235-exon-sc0000231-1491911889:400171..400315 | Clytia hemisphaerica | exon |
| TCONS_00016235-exon-sc0000231-1491911889:399386..399673 | TCONS_00016235-exon-sc0000231-1491911889:399386..399673 | Clytia hemisphaerica | exon |
| TCONS_00016235-exon-sc0000231-1491911889:397156..397296 | TCONS_00016235-exon-sc0000231-1491911889:397156..397296 | Clytia hemisphaerica | exon |
| TCONS_00016235-exon-sc0000231-1491911889:393312..395406 | TCONS_00016235-exon-sc0000231-1491911889:393312..395406 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000231 | supercontig | sc0000231:393312..400315 - |
Blast
The following BLAST results are available for this feature:
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