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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00016181 ID=TCONS_00016181|Name=TCONS_00016181|organism=Clytia hemisphaerica|type=transcript|length=1469bp
CAGAAACCGTTTTAAACATAAAGATACTTCTAAAGTTACTTCATCGAAAA
AAACAATCTGTTCAACTCATCAATTCTTTGATTCTAGCGATAAACATACG
AATGAACATAGGGTTTGACAAATCTTCGtaagataaaataaaagacCCAT
CGATTCGGAGTCTTGGTGACTCGCTAATGGAGTCAAAAACATGAAGGGTA
AGCAGCTGACGAAAAACAAATCCACGTTTGGCGATCTGAGAACCTGTAAG
ATGTTCGATGATATTGATGTTTAGAACGCCAGGGTCAGGTTGTATAAACA
TGTCCAAGAATTCAGCTTTCGAAACAAAACGAGAGCTCATTTTTTTGCTG
CTTCTATTAGATTGAAAAAGATATTCGGCAAACCCATCAAATACAGAACG
GTTATGGGTTGGAAGAACAATCAACATCTCCATCTGAATATTGAAGAATG
AGTTGAAAATACTCAAGAAGTAATCATACAGCGAACCGGATCCATAAAAA
CGTTGACGGATCGCAAACCGCAAAACAAGTTTGCTACTTCTATCCCTGTA
TTCATCAAGAGAACCATATTCTTTATATCGATCATAATCGGAGTTCATCA
TCAAATCGTATAAAGCTTTCTGAACATAACGGTTTGCGCTTCTGCTTTGA
AAAGTAATGAACCGATACCTTGGCATCCAACCAAAATAATCTTGATGGTT
TTGCTGACATAAAGAAGTAATGCTTACGCACCAGACCACAACACTCGTAT
TTGGGACACCATCTATTTCTTTTAACAAAGAGGACGATTCAGTGTAATAG
CATTCATTTAAGTGTATCCAAAAGAACTGTTCGATGACCAGAAGCGTCTG
TATCTCTCTGCCAACCATCATTGAAAAGTCGCGTAGAAATTCAACAAATA
AACTCCTGACTGGTGATGAAGTCATAATCTGCATTTCCGTAGTTAGAAAT
TGTTTATAATTATGTCTTTGTTGGCGAATCGAACGTGCTTGTAAAGGTGA
ATAAATCCAAACCATCACACATGGTGTATCCAATAATGATTTCACTAGGA
TTGCTACAGGTTGTAGCATATCTGCATTTTGTTCCTGATACCGTGAAAAC
TCATTGTGAATATTGAGCAAGAGAGTTACATTTCTTATTTCGTCACATGT
AAAGAATCCTTGTTTAACGCCGTCAAACATTCCCTTCACTGACATCGATG
ACCAAAGAAGAGTATTAATAATGAACATGTAGAAAAATGTTTGTTTCATT
TTCGAGCTTGAAAAGaagcttttttttcaaattcatgatacgcaccactg
caatgtcttctgacattacatcacggacccaacagctgattgtttgtaag
tgacgtaaaatcagttaatacgtcactttcaaccaatcagatgttGGGTC
CgaggaagacattgcaatggtgcatgtCATGAATATTCAAATTGAACGAT
AACTCCCTTATAAATTGAG Run BLAST on NCBI protein sequence of TCONS_00016181-protein >TCONS_00016181-protein ID=TCONS_00016181-protein|Name=TCONS_00016181-protein|organism=Clytia hemisphaerica|type=polypeptide|length=395bp
MKQTFFYMFIINTLLWSSMSVKGMFDGVKQGFFTCDEIRNVTLLLNIHNE
FSRYQEQNADMLQPVAILVKSLLDTPCVMVWIYSPLQARSIRQQRHNYKQ
FLTTEMQIMTSSPVRSLFVEFLRDFSMMVGREIQTLLVIEQFFWIHLNEC
YYTESSSLLKEIDGVPNTSVVVWCVSITSLCQQNHQDYFGWMPRYRFITF
QSRSANRYVQKALYDLMMNSDYDRYKEYGSLDEYRDRSSKLVLRFAIRQR
FYGSGSLYDYFLSIFNSFFNIQMEMLIVLPTHNRSVFDGFAEYLFQSNRS
SKKMSSRFVSKAEFLDMFIQPDPGVLNINIIEHLTGSQIAKRGFVFRQLL
TLHVFDSISESPRLRIDGSFILSYEDLSNPMFIRMFIARIKELMS Run BLAST on NCBI transcript from alignment at sc0000226:274037..275505 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00016181 ID=TCONS_00016181|Name=TCONS_00016181|organism=Clytia hemisphaerica|type=transcript|length=1469bp|location=Sequence derived from alignment at sc0000226:274037..275505 (Clytia hemisphaerica)
CTCAATTTATAAGGGAGTTATCGTTCAATTTGAATATTCATGacatgcac
cattgcaatgtcttcctcGGACCCaacatctgattggttgaaagtgacgt
attaactgattttacgtcacttacaaacaatcagctgttgggtccgtgat
gtaatgtcagaagacattgcagtggtgcgtatcatgaatttgaaaaaaaa
gcttCTTTTCAAGCTCGAAAATGAAACAAACATTTTTCTACATGTTCATT
ATTAATACTCTTCTTTGGTCATCGATGTCAGTGAAGGGAATGTTTGACGG
CGTTAAACAAGGATTCTTTACATGTGACGAAATAAGAAATGTAACTCTCT
TGCTCAATATTCACAATGAGTTTTCACGGTATCAGGAACAAAATGCAGAT
ATGCTACAACCTGTAGCAATCCTAGTGAAATCATTATTGGATACACCATG
TGTGATGGTTTGGATTTATTCACCTTTACAAGCACGTTCGATTCGCCAAC
AAAGACATAATTATAAACAATTTCTAACTACGGAAATGCAGATTATGACT
TCATCACCAGTCAGGAGTTTATTTGTTGAATTTCTACGCGACTTTTCAAT
GATGGTTGGCAGAGAGATACAGACGCTTCTGGTCATCGAACAGTTCTTTT
GGATACACTTAAATGAATGCTATTACACTGAATCGTCCTCTTTGTTAAAA
GAAATAGATGGTGTCCCAAATACGAGTGTTGTGGTCTGGTGCGTAAGCAT
TACTTCTTTATGTCAGCAAAACCATCAAGATTATTTTGGTTGGATGCCAA
GGTATCGGTTCATTACTTTTCAAAGCAGAAGCGCAAACCGTTATGTTCAG
AAAGCTTTATACGATTTGATGATGAACTCCGATTATGATCGATATAAAGA
ATATGGTTCTCTTGATGAATACAGGGATAGAAGTAGCAAACTTGTTTTGC
GGTTTGCGATCCGTCAACGTTTTTATGGATCCGGTTCGCTGTATGATTAC
TTCTTGAGTATTTTCAACTCATTCTTCAATATTCAGATGGAGATGTTGAT
TGTTCTTCCAACCCATAACCGTTCTGTATTTGATGGGTTTGCCGAATATC
TTTTTCAATCTAATAGAAGCAGCAAAAAAATGAGCTCTCGTTTTGTTTCG
AAAGCTGAATTCTTGGACATGTTTATACAACCTGACCCTGGCGTTCTAAA
CATCAATATCATCGAACATCTTACAGGTTCTCAGATCGCCAAACGTGGAT
TTGTTTTTCGTCAGCTGCTTACCCTTCATGTTTTTGACTCCATTAGCGAG
TCACCAAGACTCCGAATCGATGGgtcttttattttatcttaCGAAGATTT
GTCAAACCCTATGTTCATTCGTATGTTTATCGCTAGAATCAAAGAATTGA
TGAGTTGAACAGATTGTTTTTTTCGATGAAGTAACTTTAGAAGTATCTTT
ATGTTTAAAACGGTTTCTG Coding sequence (CDS) from alignment at sc0000226:274037..275505 >TCONS_00016181 ID=TCONS_00016181|Name=TCONS_00016181|organism=Clytia hemisphaerica|type=CDS|length=1188bp|location=Sequence derived from alignment at sc0000226:274037..275505 (Clytia hemisphaerica)
ATGAAACAAACATTTTTCTACATGTTCATTATTAATACTCTTCTTTGGTC
ATCGATGTCAGTGAAGGGAATGTTTGACGGCGTTAAACAAGGATTCTTTA
CATGTGACGAAATAAGAAATGTAACTCTCTTGCTCAATATTCACAATGAG
TTTTCACGGTATCAGGAACAAAATGCAGATATGCTACAACCTGTAGCAAT
CCTAGTGAAATCATTATTGGATACACCATGTGTGATGGTTTGGATTTATT
CACCTTTACAAGCACGTTCGATTCGCCAACAAAGACATAATTATAAACAA
TTTCTAACTACGGAAATGCAGATTATGACTTCATCACCAGTCAGGAGTTT
ATTTGTTGAATTTCTACGCGACTTTTCAATGATGGTTGGCAGAGAGATAC
AGACGCTTCTGGTCATCGAACAGTTCTTTTGGATACACTTAAATGAATGC
TATTACACTGAATCGTCCTCTTTGTTAAAAGAAATAGATGGTGTCCCAAA
TACGAGTGTTGTGGTCTGGTGCGTAAGCATTACTTCTTTATGTCAGCAAA
ACCATCAAGATTATTTTGGTTGGATGCCAAGGTATCGGTTCATTACTTTT
CAAAGCAGAAGCGCAAACCGTTATGTTCAGAAAGCTTTATACGATTTGAT
GATGAACTCCGATTATGATCGATATAAAGAATATGGTTCTCTTGATGAAT
ACAGGGATAGAAGTAGCAAACTTGTTTTGCGGTTTGCGATCCGTCAACGT
TTTTATGGATCCGGTTCGCTGTATGATTACTTCTTGAGTATTTTCAACTC
ATTCTTCAATATTCAGATGGAGATGTTGATTGTTCTTCCAACCCATAACC
GTTCTGTATTTGATGGGTTTGCCGAATATCTTTTTCAATCTAATAGAAGC
AGCAAAAAAATGAGCTCTCGTTTTGTTTCGAAAGCTGAATTCTTGGACAT
GTTTATACAACCTGACCCTGGCGTTCTAAACATCAATATCATCGAACATC
TTACAGGTTCTCAGATCGCCAAACGTGGATTTGTTTTTCGTCAGCTGCTT
ACCCTTCATGTTTTTGACTCCATTAGCGAGTCACCAAGACTCCGAATCGA
TGGgtcttttattttatcttaCGAAGATTTGTCAAACCCTATGTTCATTC
GTATGTTTATCGCTAGAATCAAAGAATTGATGAGTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00016181-exon-sc0000226-1491911889:274037..275505 | TCONS_00016181-exon-sc0000226-1491911889:274037..275505 | Clytia hemisphaerica | exon |
| TCONS_00016181-exon-sc0000226-1510915933:274037..275505 | TCONS_00016181-exon-sc0000226-1510915933:274037..275505 | Clytia hemisphaerica | exon |
| TCONS_00016181-exon-sc0000226-1575043694:274037..275505 | TCONS_00016181-exon-sc0000226-1575043694:274037..275505 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000226 | supercontig | sc0000226:274037..275505 . |
Blast
The following BLAST results are available for this feature:
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