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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00016057 ID=TCONS_00016057|Name=TCONS_00016057|organism=Clytia hemisphaerica|type=transcript|length=1071bp AAGAATATCAAGAACAGATTGGCATTAAACCTCGCGATTCCTTCTTTGTC AAAACACTCAGAAGTTTTGAAGATGAAAGGAGACAGAAAGTTTTCAATAA AGATGAAATTCTGCACGTCAAAGATACCAGCGAATCAAACCAGTATTGGA TAGCATACAGAAAAAATAACATTGGAAATACTCCTCCATTAAAAATACCG TCTATGAGATCACATTTTTCTCGGCAATATGCAGATCACACGTATCAAGT AATCGATGCTGATGAGCCAGCACCACCACCGCCACCGCAGAGAAGaggat tttttaactttggtgGAAATAGAAGCTCTTCCATTCAAGatcTTGACACA TTTTACGAACTACTGGATCCGGTAGAAGTGAGACGTGCGTACGAACAAGA CAATATGGGACCTAGTATTGCTATGAATGGTGTGGTCAACGGATAAATCT GAAAATCTAGCCGGTAACCGGgatctgagaaattgctatacatttcgcca tcagtttatcaaagaagaaatcatagcatggattcccaggctaaagACTT ACGTGACTgatttttgttatatttttgtcgaaattaGATATTGTAGACTT CACAACCCTCTTAGCAAGATTTTGACtatccagaaaaattttcctttgtc cCTCCAAATATCCTAATTATGATTGGAAGAATTTACACAATATACCAGAT AATAATGGACGAAATGTATAAAGGACTTACAGTTATCTGACctgctcctt tagagctttaacgTGGGCGGCCAAATTTTATAGTGGCGCCCGCCAATCCA AAATCGGAATACCACATTATTTCGAACCACCGGGTTTTCGATCATTAGAC TTCAGAATTATCAGAATTAAGAAATAGTTTACGTATGTTTGATATGCAGG CCATTATATAGGGAGTATTTTAAATAGAGAATTTCTCTTTACTCAAatct tttcatttcaaattatgTTATTTACGTATTTTAGAAAATTCTGTATCTAT GTTATGTAAATTTGACAATGGCTTTTGTAAATATAATTGTCTTTTGTATG GAATTTAAAGCTTATATCCAA Run BLAST on NCBI protein sequence of TCONS_00016057-protein >TCONS_00016057-protein ID=TCONS_00016057-protein|Name=TCONS_00016057-protein|organism=Clytia hemisphaerica|type=polypeptide|length=147bp
EYQEQIGIKPRDSFFVKTLRSFEDERRQKVFNKDEILHVKDTSESNQYWI AYRKNNIGNTPPLKIPSMRSHFSRQYADHTYQVIDADEPAPPPPPQRRGF FNFGGNRSSSIQDLDTFYELLDPVEVRRAYEQDNMGPSIAMNGVVNG Run BLAST on NCBI transcript from alignment at sc0000225:228400..234825- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00016057 ID=TCONS_00016057|Name=TCONS_00016057|organism=Clytia hemisphaerica|type=transcript|length=6426bp|location=Sequence derived from alignment at sc0000225:228400..234825- (Clytia hemisphaerica) AAGAATATCAAGAACAGATTGGCATTAAACCTCGCGATTCCTTCTTTGTC
AAGTAAGAAATTTAAATCTATTTTGGTGTCCCAGCTGACTAACAACGTTG
TTTCAACGTTGATGAAATATTCACAACGTCCATACAACGTTAGATGAACG
TTGAAATAACGCTTTTGTCAGCTGGGATTAGACTATTATGTCCCATTTAT
CTGTTCTTATTTTGTTCTAATAATTTTCGCTGAGTATATTCTGGAGTCGA
TGAAGCTAAAATATCACTAAAATGTGAGAGAGTTTTTGTGTCGAATTTTG
CGAAACAAAAAACAAATAAAATCTAATTTCCCCAAATTTTTCAGAATAGG
TACCCTGTAATTCAGGGGTGGTGCCCTCCTTAATTCTAGTGAACTGCAGT
TGCAATACTTTCAACCTTTCTGAGACTAGTACCAAAGTGATTGTACCTAA
CCCTTAGCTTTTTTCTCTTCTCCTATTCCTTCTCTTTATCTGAAAAATTG
GGAGGAAGATTTTGAGAGATTAGCAATAATATTTTTGAGAACCTATTTCA
TATATACATGAAATAGTCAACAATCTCCGTACTAACCCAGTGCCGTAGCA
ACTGGGGGGGGGGGCAAGGGGGGCTATGCCCCCCCCCCCCAANNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNGCTCCCCCCCCCTCCCCTAATAATTTTTTCAA
AAATAGTTATTTTGCAAAATGCAAAGTTTTTCTTTTTTAATTTGTCATAA
TTGTCTTTATGTGCATGTTTTGAGTGTATTTTTAAGCCATCTAGAGCTCA
AATTTTCAGAATTTCCCCCCTCGGGCCAAACCATGGTTGGCCCTCGCGGT
GTCACTAAACTTCATCCCCCCCCCCAATATGAAAATGCCTCCTACGGCAC
TATAGCCTAACCTATATTATTCGAATCGTTCTATAATTTGAACTAAATCA
TCGGTACCCTCCGCTGGAAAGTTGTAAAAAAGAATTTCCATGTTCCTAAT
CTTTTTATGATTCGAAAAAATTTTTGGGTCCTTAAGGATGAAATTTAAAA
AGAATCAACTATATTTTATACGTTTTTTTATAAGAACATTCAACATTTTT
GAAGCCTTCGGATGTTCTTAACTTTTTGGGTTTCCAGCCTAAAAATGTTC
TTAACATTATTTTAACCAAGTTTTGACCATTTTTATTCATTTTCCTGCTA
AGAAATCGAGTGCTTTTGAGTCCATAATGCATTAAAATGTACTTGGCTTG
TTTTTGATATTTTGACCTTCGAAGCCTCATGTTCTTATATGGGTTGTTCT
TATTAAACAAATGTGTATACAATGTTTATTCAGAACACTCAGAAGTTTTG
AAGATGAAAGGAGACAGAAAGTTTTCAATAAAGATGAAATTCTGCACGTC
AAAGATACCAGCGAATCAAACCAGTATTGGATAGCATACAGAAAAAATAA
CATTGGAAATACTCCTCCATTAAAAATACCGTCTATGAGATCACAGTAAG
GATTTTTATTCATGACACTTTTCCACATTTAAAAGTGCGAAAAAAAGTAA
TACCTTATCGGCCAAAACTTAGTCGGCCTTAATTTTAGTCGGCCTTAATT
ATTAATCGTCCCTAATTTTAGTCATCTCGTCAAAATTTAGTCACTAAGGG
CTGACTAATAACTAAGTTTCGGCCATTTCTAAATTTTTAGTCGGCCCAAA
TTTTAGTCGGCCCAAATTTTTAGTCGACCCTAATTTTAGTCACCAAGCCA
AAATTTAGTCACTTAGGGCCGACTAAGTTTTGGCCGATAAGGTATGTGTT
TTTAGAAAACTTATCTAATTCCCCTTGCTACACCCGGCTGACTATTTTTG
AACTTTATCATGCTATCTAACGCCAGAACACTAAGGCCACAACTGCTACG
AGAGAAGGAATCTGCATGATGACTCATAAGAGGACTCGGACTCATTTTCT
AGAAGATGTTTTAAAAAGATAAAAAAAATAACTATAAAATTCGTGAATAG
TCTAAATATTTTCAATTCTTTTTTTTCAAATTCTTACCTAAAACCTTGAA
AGAGGGACTGCTTGTTCAATTTTGTGGTTTCTAACCTCACCTTGGACAAG
TGAAATTAAATAAAAACGTGGTCGCATGGTGTTTTTTCACAAGTAACCAG
GATATTCTTGATATGCGTAAGTTAATATGACGTCATATTTTATAACGGAA
GCACTCGAAAAAAGCCGGATTTCGACCTCCGTGTTTCTATTTTTAGTAAC
AGAGAGGGGTCAAATCCTGGATTTTTTCGGGTTTTTCCGCTAGAAAAATG
ACTTTCGCATATCAAGAATATGGTGACAATAATGTATCTTATATTTCTTT
TTTTCCCGCAGTTTTTCTCGGCAATATGCAGATCACACGTATCAAGTAAT
CGATGCTGATGAGCCAGCACCACCACCGCCACCGCAGAGAAGAGGATTTT
TTAACTTTGGTGGAAATAGAAGCTCTTCCATTCAAGGTAGTTTGTTTAAC
CCTATTCAACCTAGGCTTTTAGGGGCGGTTCAGAACTAGGGGGCTGATCC
TGTACCACCCTTTAACTTTTGATCTAGTGGGTCTTTTTGGATGAAATTTG
GCTCACAAAATCCTTCTCACATAGGGTAACTTTTGACAACATTTTTTTTG
ATGACGTCACTCATCATGCCCAAAGTGAGCAAAAACTTTCCTTTGTTCTT
ATAAATAGCTATTGTATTCTAACAAAGACTTTAGAAAAAAGTTGCCTGAG
TTTAAAATGCTTAATTTATCCTAAATATTTACGGCTTAAACGATATTTGA
CATAAAAAATAAATTTGTATTGGAACAGTGTCAATTTTTGTGACACCTTA
CTGTCAGAAATGCCATCAAACTCAAAGTGTGAAAATTTTTAGGTGTCAAT
TTTTTTTAAATTTTGAAGCTAGATAAAAGTTAGGAATTTACAGAAAATTT
CATGGCAAAAGCTCTTTTATTTCAGGAGCTATTACCAATAATTTGACCTC
CGAATAGAAACAGCCCCCCCCCTAGGCCGAATAGGGCCAAGACCAAGTTA
AGAACATTTTAAGGCTTTGCGGGCGCTAAAACATCAAATTTCTTAAGAAA
AATGGTCAAAAATACTCACCCAATGGGGGAAATAAGAACATGTCAAAAAC
ATTTTTCCAAAAAGTTAAGAACATCTGAAGACTTCAAAAATTGTGGATGT
TCTTATAAAAAAAACGTGTACTGCCAAGAAAATATGTATTCACAAAAAGC
AAATACTTAAAAATGAATACAGCATAAAGTTATAGGGTGTTGTCTGTTCA
ATGGACTTCTATAAAAANCCCCCCCCCCCCCCCCCTAGGCCGAATAGGGT
TAAAAGATTATTGAGTTGAAGTATTAAAGGTTTTGCTTTTAAATAAGAGT
TTAATAATCATTTGCTTACTCATCAATTTTGATTCACAAGCTTTTTCATA
TTGGATTGACACGGATGTGGACCAAGATTGGTCATAAACAGGAAAAGAAA
AACATTTTTTTGCTTATATCAACATAACAATATGCAGACCTGTGATATGA
AAATATGTCTGATATAGAATGGGAACACTTGTTTAAAAATAAAACCTTTA
ATGGTACACTTACCTTTAGTTGAAGCGGTTGCCGAGTGGTCTAAGGCTTC
AGTACCGTAAACAAGAGGTTCTCAATTCGAATCTTATCCCTTCCAATTTT
CCGTTCAATTATTAGATAGCTAAGCCGACTGGCTGTGGACCCCATGAAAA
CAATCGAAAGACTGCCTTAAAAGTCTTAGATTACTGGACATTCAAGCTAG
AATATCGGGTCTATAAATAAGGGGTTCTCAGTTAGATTTCCCGCTCCTTC
AAATGCTCTGTTCATTTTGTAAGGGTTGAATTTTCTGCCCATTTTCCCCG
TGGGAGACCCAGTAGGGCTGTTGAGATGGAGTTTTTATAAGATACTTTAA
TAATTGGTCATTTGAAGTAATAACAATGACGCGTTCTTTAGAAAAAGTAA
CAAAATTGTTTTATTACTGGTTAACGACCAACAAAATCAAATAAGAGCTT
TTAAAAACTCTATCTCGTCCCCAATAATGTGATATTAGGATGATTTGATT
ATGTTCCCTGACCAACAGTTTTTTTTCTTACACGAACTATGAGGCCATAG
TATTATTTGAGGCATCACTTTTTTTTGCTTAAGAAAGTTTGATGATTCCT
CTCTAGCCACTTCGGGGTTTCAAACTCAAAGCTAAGAAAGTGAAAATCCA
AAAGAATTCTGCGATAAAACTAAGACACGATAATAGGTTTCAGGCTGAAG
AAAGTGCGGACCTGCCTGAATGATGTGGTAAAACTTCAAATTAATTCGCT
GGAGGACAGAATCAAGTAATTTGATTGGCCAAATTTGGAGATTCTTGGCT
CACTCGTTAACTAAAAAATGGTCAAAAAACTATCAAAATCTTAAAAAAGT
GGATTTTTTGCAAATTTATGCATTTTTTTGACTTTTTGCATTTTTTTGAC
TTTTTAGCTTAAAATATCGCTGAAAAGACTGACTTTTGATTTTTTTGCTT
GACCCATGAAATCCAATTCAAATCCTACAAGTTAGACTAAAAATGACGAT
TTCTAACTCAAACTGGGCATTACAGGAGGGCTTCGTCCTCCTACATAGCC
CATGTCTGATATACTCAACATTGGCACTTAAAGGGTTAAGCAAAAAAAAG
TGAAGCCTTAAGTTTGCCCCACATTTAGAACTTTAGTTGGATAAACACGT
TGACCACGTGTTTTGGATGGGAAATAGGTGGCTTCATTTCTTATCCAGGA
GTTTGGGATCTAGCCCCTTCCTGGCTTTGAAATCAATTCAATCTTCAAGG
GACCAAGAATTCTCTTCGAATAAGAGAAAGATTCGAATTACAGAGACTAT
TTCATACCACTTTCTAGCTGCGGAAACCAGGATTTTATTTCGAATCATAG
AAATATTCGAATAGTAGAGGTTCGAATTATAGAGAGTTGACTGTCTATAG
GGCTACTTAGACTACACAATATATTGACGAACAATATTTGGCAATATCGT
TTTCGGACCTTAATGTACGAAGTAAATAACAGGTACTTCATTATAAAAGG
AATTTTCTTTCTGTAAAAAATCCCTCTATATTGTTGGAATATTACAAATC
GAGCTGACAATATATTGCAGACACATTTTCAATTGGCACTCAGCAATATA
TCATCAATATATTTCCTGACAATATATTGTGTAGTGTATGTAGCCCTTAT
GCATTTTAAATATTTTTCAGATCTTGACACATTTTACGAACTACTGGATC
CGGTAGAAGTGAGACGTGCGTACGAACAAGACAATATGGGACCTAGTATT
GCTATGAATGGTGTGGTCAACGGATAAATCTGAAAATCTAGCCGGTAACC
GGGTAAAAATACTACTTTATCGGATTACAGTTATTAGTTGCGACTCTTAG
CATTCGAGTACTGCCGAAGAGACGGAAATTTACAAGAAAAAACCAAATTT
TATGAAATGTGTGAACTTGTCGTCCCTCTAAAGTCTAGACTTACGTAGAC
AGGAGACCCGTCGTGTGTTTTTTTATAATCGTTGATGTACACAAGACGGG
TTCGAGCTGTGAGTCTAATATTGGACTCACATTTTTTACAGTGGGAAATT
CGAATTTAGCGCTATCCTCACTTACTAAAATAAAAACCAAATTTCGAAAG
TTGCGCTTTCTCTAAGAAAGTGTGACCAGTAAAAGAATAACAAAATTTGA
TTGGCTATGTTTTCAACCGTTATTAGGATCTGAGAAATTGCTATACATTT
CGCCATCAGTTTATCAAAGAAGAAATCATAGCATGGATTCCCAGGCTAAA
GACTTACGTGACTGATTTTTGTTATATTTTTGTCGAAATTAGATATTGTA
GACTTCACAACCCTCTTAGCAAGATTTTGACTATCCAGAAAAATTTTCCT
TTGTCCCTCCAAATATCCTAATTATGATTGGAAGAATTTACACAATATAC
CAGATAATAATGGACGAAATGTATAAAGGACTTACAGTTATCTGACCTGC
TCCTTTAGAGCTTTAACGTGGGCGGCCAAATTTTATAGTGGCGCCCGCCA
ATCCAAAATCGGAATACCACATTATTTCGAACCACCGGGTTTTCGATCAT
TAGACTTCAGAATTATCAGAATTAAGAAATAGTTTACGTATGTTTGATAT
GCAGGCCATTATATAGGGAGTATTTTAAATAGAGAATTTCTCTTTACTCA
AATCTTTTCATTTCAAATTATGTTATTTACGTATTTTAGAAAATTCTGTA
TCTATGTTATGTAAATTTGACAATGGCTTTTGTAAATATAATTGTCTTTT
GTATGGAATTTAAAGCTTATATCCAA Coding sequence (CDS) from alignment at sc0000225:228400..234825- >TCONS_00016057 ID=TCONS_00016057|Name=TCONS_00016057|organism=Clytia hemisphaerica|type=CDS|length=1776bp|location=Sequence derived from alignment at sc0000225:228400..234825- (Clytia hemisphaerica) ATCTTGACACATTTTACGAACTACTGGATCCGGTAGAAGTGAGACGTGCG TACGAACAAGACAATATGGGACCTAGTATTGCTATGAATGGTGTGGTCAA CGGATAATTTTTCTCGGCAATATGCAGATCACACGTATCAAGTAATCGAT GCTGATGAGCCAGCACCACCACCGCCACCGCAGAGAAGAGGATTTTTTAA CTTTGGTGGAAATAGAAGCTCTTCCATTCAAGAACACTCAGAAGTTTTGA AGATGAAAGGAGACAGAAAGTTTTCAATAAAGATGAAATTCTGCACGTCA AAGATACCAGCGAATCAAACCAGTATTGGATAGCATACAGAAAAAATAAC ATTGGAAATACTCCTCCATTAAAAATACCGTCTATGAGATCACAGAATAT CAAGAACAGATTGGCATTAAACCTCGCGATTCCTTCTTTGTCAAATCTTG ACACATTTTACGAACTACTGGATCCGGTAGAAGTGAGACGTGCGTACGAA CAAGACAATATGGGACCTAGTATTGCTATGAATGGTGTGGTCAACGGATA ATTTTTCTCGGCAATATGCAGATCACACGTATCAAGTAATCGATGCTGAT GAGCCAGCACCACCACCGCCACCGCAGAGAAGAGGATTTTTTAACTTTGG TGGAAATAGAAGCTCTTCCATTCAAGAACACTCAGAAGTTTTGAAGATGA AAGGAGACAGAAAGTTTTCAATAAAGATGAAATTCTGCACGTCAAAGATA CCAGCGAATCAAACCAGTATTGGATAGCATACAGAAAAAATAACATTGGA AATACTCCTCCATTAAAAATACCGTCTATGAGATCACAGAATATCAAGAA CAGATTGGCATTAAACCTCGCGATTCCTTCTTTGTCAAATCTTGACACAT TTTACGAACTACTGGATCCGGTAGAAGTGAGACGTGCGTACGAACAAGAC AATATGGGACCTAGTATTGCTATGAATGGTGTGGTCAACGGATAATTTTT CTCGGCAATATGCAGATCACACGTATCAAGTAATCGATGCTGATGAGCCA GCACCACCACCGCCACCGCAGAGAAGAGGATTTTTTAACTTTGGTGGAAA TAGAAGCTCTTCCATTCAAGAACACTCAGAAGTTTTGAAGATGAAAGGAG ACAGAAAGTTTTCAATAAAGATGAAATTCTGCACGTCAAAGATACCAGCG AATCAAACCAGTATTGGATAGCATACAGAAAAAATAACATTGGAAATACT CCTCCATTAAAAATACCGTCTATGAGATCACAGAATATCAAGAACAGATT GGCATTAAACCTCGCGATTCCTTCTTTGTCAAATCTTGACACATTTTACG AACTACTGGATCCGGTAGAAGTGAGACGTGCGTACGAACAAGACAATATG GGACCTAGTATTGCTATGAATGGTGTGGTCAACGGATAATTTTTCTCGGC AATATGCAGATCACACGTATCAAGTAATCGATGCTGATGAGCCAGCACCA CCACCGCCACCGCAGAGAAGAGGATTTTTTAACTTTGGTGGAAATAGAAG CTCTTCCATTCAAGAACACTCAGAAGTTTTGAAGATGAAAGGAGACAGAA AGTTTTCAATAAAGATGAAATTCTGCACGTCAAAGATACCAGCGAATCAA ACCAGTATTGGATAGCATACAGAAAAAATAACATTGGAAATACTCCTCCA TTAAAAATACCGTCTATGAGATCACAGAATATCAAGAACAGATTGGCATT AAACCTCGCGATTCCTTCTTTGTCAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00016057-exon-sc0000225-1575043694:234774..234825 | TCONS_00016057-exon-sc0000225-1575043694:234774..234825 | Clytia hemisphaerica | exon |
TCONS_00016057-exon-sc0000225-1575043694:233281..233442 | TCONS_00016057-exon-sc0000225-1575043694:233281..233442 | Clytia hemisphaerica | exon |
TCONS_00016057-exon-sc0000225-1575043694:232290..232414 | TCONS_00016057-exon-sc0000225-1575043694:232290..232414 | Clytia hemisphaerica | exon |
TCONS_00016057-exon-sc0000225-1575043694:229374..229505 | TCONS_00016057-exon-sc0000225-1575043694:229374..229505 | Clytia hemisphaerica | exon |
TCONS_00016057-exon-sc0000225-1575043694:228400..228999 | TCONS_00016057-exon-sc0000225-1575043694:228400..228999 | Clytia hemisphaerica | exon |
TCONS_00016057-exon-sc0000225-1510915933:234774..234825 | TCONS_00016057-exon-sc0000225-1510915933:234774..234825 | Clytia hemisphaerica | exon |
TCONS_00016057-exon-sc0000225-1510915933:233281..233442 | TCONS_00016057-exon-sc0000225-1510915933:233281..233442 | Clytia hemisphaerica | exon |
TCONS_00016057-exon-sc0000225-1510915933:232290..232414 | TCONS_00016057-exon-sc0000225-1510915933:232290..232414 | Clytia hemisphaerica | exon |
TCONS_00016057-exon-sc0000225-1510915933:229374..229505 | TCONS_00016057-exon-sc0000225-1510915933:229374..229505 | Clytia hemisphaerica | exon |
TCONS_00016057-exon-sc0000225-1510915933:228400..228999 | TCONS_00016057-exon-sc0000225-1510915933:228400..228999 | Clytia hemisphaerica | exon |
TCONS_00016057-exon-sc0000225-1491911889:234774..234825 | TCONS_00016057-exon-sc0000225-1491911889:234774..234825 | Clytia hemisphaerica | exon |
TCONS_00016057-exon-sc0000225-1491911889:233281..233442 | TCONS_00016057-exon-sc0000225-1491911889:233281..233442 | Clytia hemisphaerica | exon |
TCONS_00016057-exon-sc0000225-1491911889:232290..232414 | TCONS_00016057-exon-sc0000225-1491911889:232290..232414 | Clytia hemisphaerica | exon |
TCONS_00016057-exon-sc0000225-1491911889:229374..229505 | TCONS_00016057-exon-sc0000225-1491911889:229374..229505 | Clytia hemisphaerica | exon |
TCONS_00016057-exon-sc0000225-1491911889:228400..228999 | TCONS_00016057-exon-sc0000225-1491911889:228400..228999 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
sc0000225 | supercontig | sc0000225:228400..234825 - |
Blast
The following BLAST results are available for this feature:
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