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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00015855 ID=TCONS_00015855|Name=TCONS_00015855|organism=Clytia hemisphaerica|type=transcript|length=3294bpRun BLAST on NCBI protein sequence of TCONS_00015855-protein >TCONS_00015855-protein ID=TCONS_00015855-protein|Name=TCONS_00015855-protein|organism=Clytia hemisphaerica|type=polypeptide|length=551bp GKLKEKKEKMKSDYLEDLTPRAEIFRSKLIEDFQLLASFNNSSSESPKYYRun BLAST on NCBI transcript from alignment at sc0000217:267524..310660- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00015855 ID=TCONS_00015855|Name=TCONS_00015855|organism=Clytia hemisphaerica|type=transcript|length=43137bp|location=Sequence derived from alignment at sc0000217:267524..310660- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000217:267524..310660- >TCONS_00015855 ID=TCONS_00015855|Name=TCONS_00015855|organism=Clytia hemisphaerica|type=CDS|length=23184bp|location=Sequence derived from alignment at sc0000217:267524..310660- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00015855 vs. Swiss-Prot (Human)
Match: CTSR2 (Cation channel sperm-associated protein 2 OS=Homo sapiens GN=CATSPER2 PE=1 SV=2) HSP 1 Score: 227.639 bits (579), Expect = 6.353e-64 Identity = 178/533 (33.40%), Postives = 284/533 (53.28%), Query Frame = 3
Query: 60 PRAEIFRSKLIEDFQLLASFNNXXXXXXXXXXXDLCESQELMDKMLKENPHGLVKFQVYSTKGES-TYEDRRLNR--VKTKNAIPFGPWAKMIVENQFFQNLMLAIILANSIVLGIQAELTQTEASSYKGLKLVLDIFDYISMLVFILEILLKWVDAFWDFWKNGWNNFDFLVTVMSLVPEMIKLLSGEQTAQLAVVAENLRVFRILRSLKMVSRFAQLRIIVLTILKAFKSMVFISTLLAVFMYIFAVAGTIMFSRQPGDPYPHIEGK--FNTLGQSLATLFQLFTLDHWFDVLNELTIVS--NDIVSKCYIILWICFGAFVFRNIFAGIMVMNFQNIRADFTTQCNEREMEIQEVSNERLLENELAVQYRRASSIVSGDGRRRSTVLDSIQRTTTIYSNQHLSVIAEDAQSKEEEEVEDNGDNKENDYLPNNENMRTEEEDATKPAWPLHRHSYNKGSEFPEST-----------SWNNAVRLNLKNLSSMNK-ETLWPRDYLFKYLQLMEALQDNLVERHQLQRLAGELL 1601
PRA+ RS+LI+ F L+ S P++ +L + K++ + H LV+F + + E ++ R L+R V+ P WA ++E F+N ++ ++ N+I+L ++ EL ++ + LKL L++ + +L+FILEILLKW+ F FWK+ WN FDF+VT++SL+PE++ L+ T Q +V + LR+ R+LRSLK++++F Q++II+L +++A KSM F+ LL +F YIFAV G +FS P +E F+ L SL T+F LFTLDHW+ +L ++ V + I S Y ILW+ G+ +FR+I +MV NFQNIR + + RE++++ +R + RR + S + DS + + + LS E EVE N E D + + +TEE + K + + S + S+ W V NL L M++ + +WPRD LF+Y +L+E LQ NL ER +LQ A + L
Sbjct: 13 PRADAIRSRLIDTFSLIEHLQGLSQAVPRHTIRELLDPSR-QKKLVLGDQHQLVRFSIKPQRIEQISHAQRLLSRLHVRCSQRPPLSLWAGWVLECPLFKNFIIFLVFLNTIILMVEIELLESTNTKLWPLKLTLEVAAWFILLIFILEILLKWLSNFSVFWKSAWNVFDFVVTMLSLLPEVVVLVGV--TGQ-SVWLQLLRICRVLRSLKLLAQFRQIQIIILVLVRALKSMTFLLMLLLIFFYIFAVTGVYVFSEYTRSPRQDLEYHVFFSDLPNSLVTVFILFTLDHWYALLQDVWKVPEVSRIFSSIYFILWLLLGSIIFRSIIVAMMVTNFQNIRKELNEEMARREVQLKADMFKR------QIIQRRKNMSHEALTSSHSKIEDSSRGASQQRESLDLS---------EVSEVESNYGATEEDLITSAS--KTEETLSKKREYQSSSCVSSTSSSYSSSSESRFSESIGRLDWETLVHENLPGLMEMDQDDRVWPRDSLFRYFELLEKLQYNLEERKKLQEFAVQAL 524 The following BLAST results are available for this feature:
BLAST of TCONS_00015855 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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