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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00015841 ID=TCONS_00015841|Name=TCONS_00015841|organism=Clytia hemisphaerica|type=transcript|length=1997bp
ACGTGCCAAAAAtaccaatttaaaaacaaagcgAAATTTCGAAATAACTT
GGAGAAATACGTTCCAACAAAAGCGGAAAATTACTGGGAAACTTGCTTAA
ATCGATTGTAGTTGAGAAATCAGACATCGTTTTCTGGTATTATTTCTTTC
ACTGTCAAGTGAAACTTTCGCATcttcaaaaacatattttaatTTGAGAG
AGAAGCGAAACAACAAGATGGTAGCTTTGACAGAGAAAGAGAAAGAAGCT
TTGGGAAAACATATTCGGGATGCTGAAAACTCTGATTCTGGgGAGGAGAT
GTCAGAAGACGCAGAACTCCAATCCAAAACCTTGGCAATGAGGATCCAGG
GGAAAATTGCCAGCAAGATGTCAACCAAGGGGCTAGCTAAGCAGGTGGTA
GATGGCCCCACGTCAGACCTTATCGATGATTGTTacaaaatcgccaaaat
ttATCTTGGGAATAAAAAAGACGCCGAAAAAGTGATGAAAAATATGATCA
AGATTGTTGTGAAAGTTGCCATTTTATCTCGGAATAGTGTATTTTCAGAT
GATGAGCTTATCCTGGTACGANCAAGATTGTTGTGAAAGTTGCCATTTTA
TCTCGGAATAGTGTATTTTCAGATGACGAGCTTATCCTGGTACGTGATTT
TCAGAAGAAATTTAAAACCATTGCAAAAACAATCATCAGTTTTTATGAAG
TTGATTTCACATTCGATGCTGAGTATATGATCAAAATTATGGGTGAGTCA
AAAGAACTGTTAAAGAAATCTGTTAAGAATCACCTAACGGAGAAATCTTT
GAATCGCATAGACAGTGTTTATACCGTGTATTCGAATGAAGCTCTCCTCA
GTGACGCGTTTACACCCGATTCAAAATACAGATCACATCTGGGAAATATC
GTCAAAGGCCTGAATACGCTGATAGAACAGGGTGAGCTATGATTGGTCGA
TACGGATCATgtgatttttacgttttttcaaaaatcttctaatttttttc
cgttgttttttttgtgacTAAAGTATTATCTAATTAGGCTTcctttttaa
aataatgaaattccTTATTTTCTAATAGAAATTTTACGACAAAATGatga
acaatttttttaagaCTATATGATAATAGTTACCTACTTATACACTGCTT
GCCCCTTTCCTAGGAGATTTTATTGatgatttttaggaatttttagagat
agaaaacaaatttcttttattttatttgtgtATTATACTTTTGTTATATG
GACATTTTTTGTAGCATAGAAGGTCGTTTCGTTTTTCTCCTCTTTTAGTG
CCAAACGTAATTTTTGCGTTGTGTTCAGGTGAGAAGCTTCTTAATTGGTT
ATCTCTAAATTTTGGGctagtttttcctttttcgtaATACCTAGATTTTT
ACAATGAACTTTTAGAGAtaaatttcaatcaatcaattgccataaatttt
tttaacgGAAATCCTTTCTCGAAAGTTTTTTAATACAGGCAATGGgtaat
gaaaaaatataattatcaCATAGTTCAAGCCACAGCCCCTTCCACATGTC
TCAGTTAGCTGTTGAGTCTGTAAACAAGCCCTCTCCCCCCGCCACTCTTC
AGTGAACGTCCACGGACTAACTTAACCTTCTGCCCCCTGTTTGTTTTCCC
GCTCCTCCACTTATTTAACAACGTACTTACGCCCAACGTACGCCCCAAGC
ACCCGTCCCTTTAACTATCTATCCTGCTAACCCTCGTGCATTAGGtgtat
tttagcatttaggtATTAGTTTATTTCGAgggaaacttattttttctgtA
CTGTATTACGTTTACTATACCAATTTTTTTCTAAGCACGCATATGTACTT
TGTAATATTCAttacactttttaattttttgtcgtttctgtaattttttt
cctttttctttctttgtaaactttttttagcagtttattttgtaaaaagt
caAAAGTATGATATAAAAGATAAAACGATACATCTACTAAATCTTAC Run BLAST on NCBI protein sequence of TCONS_00015841-protein >TCONS_00015841-protein ID=TCONS_00015841-protein|Name=TCONS_00015841-protein|organism=Clytia hemisphaerica|type=polypeptide|length=122bp
MVALTEKEKEALGKHIRDAENSDSGEEMSEDAELQSKTLAMRIQGKIASK
MSTKGLAKQVVDGPTSDLIDDCYKIAKIYLGNKKDAEKVMKNMIKIVVKV
AILSRNSVFSDDELILVRXRLL Run BLAST on NCBI transcript from alignment at sc0000217:156061..161770- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00015841 ID=TCONS_00015841|Name=TCONS_00015841|organism=Clytia hemisphaerica|type=transcript|length=5710bp|location=Sequence derived from alignment at sc0000217:156061..161770- (Clytia hemisphaerica)
ACGTGCCAAAAATACCAATTTAAAAACAAAGCGAAATTTCGAAATAACTT
GGAGAAATACGTTCCAACAAAAGCGGAAAATTACTGGGAAACTTGCTTAA
ATCGATTGTAGTTGAGAAATCAGACATCGTTTTCTGGTATTATTTCTTTC
ACTGTCAAGTGAAACTTTCGCATCTTCAAAAACATATTTTAATTTGAGAG
AGAAGCGAAACAACAAGATGGTAGCTTTGACAGAGAAAGAGAAAGAAGCT
TTGGGAAAACATATTCGGGATGCTGAAAACTCTGATTCTGGGGTAATTTA
TTTTTCTTATGAATTTTCTCACATTTTACCAAAAATATGTCCGTCATTCA
GATGTGAGTCGCTTTAAAAAAGAAACTCATTTCAGTCATTACTTTAGAGT
TCAGTAAATATTTTCGATTTAATTGTGGGTTTTAGTGTGCTTAAAAGGGC
TCTGTTTCAGTAGCGTGGTGGGTCGACCAAAATTCAGGCAAACTGGGGAG
ACAATTTTAGAAGATTTGAATTTGGCGCCCCCTCTGAAAAATGAATATCT
TTGTAAAAATTAGGCGAGTGAAGTGAGCGCGAAATTTTCGGGGTACTTTC
TCTTTTTTTTTTGGCTGAAAAATGCCATATCTAAGTTGTAAAAGAGCAAA
GGGGCGCCGAAATTAGTAATAAGAGGCGTCTTTTTGCGTCCTTTGTATTT
CGGTGCCCCCCCCCCCAAAAAAAAAAAAAAAAAAATCGGCTGCTGGGGGA
CGGGCACTGCCACCACGCTACTGCTCTGCTTAGAAAAGAATTTTCACCTC
TGGATTTTTGTGATTTTAATTTTGGTAAAGTTTGAAAAAGTAGCCGTTTT
TTTTTCTTCTTAATCATGGGGCTCATTTGAGCTGAGGCTGGGCACGCGCT
TAAATTTCTATTGTTTTATAACAATAGATCTTTGTTTTTCTATAACAGTA
GATCTATAGCTTTCAAGCCAAATCTCAGCCTGGCTATGCTTACAAGCGTG
GTTATGCTTAATAAAAAACGTGTATTCGTCTTTTCAGCCACTAGCAAAGC
TTGTTCTCTTTTTTTATAAAATTTTGCTTTCGGAATATTTGCTTGTGTGA
CCTTCCTGGAAAGTTGTACAATACTCAACTTGGGCTCAAAAAAAATCTCT
GAAAAGAATGCTCAAGCAATTGACAAGAAAGAGTTTTAAAGATTGAAATT
TAACTATTTCTTGTTTCTCAAACTTTCCGATGAGGGACCCTTTAAAGGGG
GGGGGTGAGATTGAAGTTTCACTTTTGTTAAAATCTCTTACAACCATGAG
AATGGAGAATTTTTTGAAGCAAGTTCTCTCTCAACTTTTCTCTAGTTTAA
ATTATTGTTCTCGCTCGAGCCAACATTTAAAGTTGTATTTACATTTCAAG
CACTTGAAAAATAATGAAGGTTGTTAGGTCACTATTTACATTGCTAACCA
AGGAGTTGAGAAAATGTTTATCTGTTAGGAGCTAAGCTATTCAACGGTCT
ATTCTTTTTTCGTCGAGAGGAAATTTGAAAAAATAGCTTATTGGTGTATT
AAAGCTGGCGATTTTNGGCTGCTGGGGGACGGGCACTGCCACCACGCTAC
TGCTCTGCTTAGAAAAGAATTTTCACCTCTGGATTTTTGTGATTTTAATT
TTGGTAAAGTTTGAAAAAGTAGCCGTTTTTTTTTCTTCTTAATCATGGGG
CTCATTTGAGCTGAGGCTGGGCACGCGCTTAAATTTCTATTGTTTTATAA
CAATAGATCTTTGTTTTTCTATAACAGTAGATCTATAGCTTTCAAGCCAA
ATCTCAGCCTGGTTATGCTTACAAGCGTGGTTATGCTTAATAAAAAACGT
GTATTCGTCTTTTCAGCCACTAGCAAAGCTTGTTCTCTTTTTTTATAAAA
TTTTGCTTTCGGAATATTTGCTTGTGTGACCTTCCTGGAAAGTTGTACAA
TACTCAACTTGGGCTCAAAAAAAATCTCTGAAAAGAATGCTCAAGCAATT
GACAAGAAAGAGTTTTAAAGATTGAAATTTAACTATTTCTTGTTTCTCAA
ACTTTCCGATGAGGGACCCTTTAAAGGGGGGGGGTGAGATTGAAGTTTCA
CTTTTGTTAAAATCTCTTACAACCATGAGAATGGAGAATTTTTTGAAGCA
AGTTCTCTCTCAACTTTTCTCTAGTTTAAATTATTGTTCTCGCTCGAGCC
AACATTTAAAGTTGTATTTACATTTCAAGCACTTGAAAAATAATGAAGGT
TGTTAGGTCACTATTTACATTGCTAACCAAGGAGTTGAGAAAATCTTTAT
CTGTTAGGAGCTAAGCTATTCAACGGTCTAATATTTTTTCGTCGAGAGGA
AATTTGAAAAAATAGCTTATTGGTGTATTAAAGCTGGCGATTTCATTTTC
CATAAAAGTCTTCATCCTTGAAAACCTTGAACTCGATTTGAATTCGCTTT
TTAGACGTCGATCATCACTGTTAAGATGGCTGTGAGTTTTTTTTATTAAT
TTAAAGGATACTCAGATTGTTGGAGATAAGACATAAAGATTCCTTTTATT
GTCAAAACCTCGCAAAACCTCGCAATATTTTTGCCTAACTATTTTCCGAA
GTCGCAATATATGAGTTGCAAGTTTTTGTAAAACACTTCTACGTAAAGAC
TTTTAAATTTCAAATTGTGATATCTCGACTTTGGAAAATTATTTAGACAA
AAATACATGGAGGTTTTACTCATCAGGACCACAGAAGGTTCTACAATACA
AGCCAAAAACTAGTACACATTTCTTTATTTAAGCAACTCCAATTTTCGGG
TCAGGGGTTTCTTAGCATTCTAGCTCATTTTCTGAAAAATTTGCCTTGAC
GCATAATTTTATACCATATTTATGCCTATTGGGTCATGGGGTACCGTTTG
CCATGCTTAGATAATAAAACCTTTTACTCTACGAGAAAGTGAAAAAAGTT
GAGCAATTTCAAGGCTTGAGCCTTAGCAACTTGGTTGCTTTTAAAGAAAG
AAATGTGTTCTTGAATAAAGAGGGTTTTAAGGAATCGAAAGTACTTCAAT
ATTCGATCTCTGGTGCGCAATAGGGATGAATCAAGTACCCTTATCGGCCC
TTTTTACGCCGGCCCTTTTTGGCGTTATTTTTGGGCTTGTGGCGTAATAA
GGGCCGGTGTTAAAAGGGCCGGCGTAAAAAGGGCCAAATTTTTGCAATTT
TTACCTAAAAGCAGCGTTAATTTTTGACAATTTTTTCTCAATTTAAAGGA
TTTTAGGCATGATTAAAGGATGAAAACTATCCATTTTTATATTCATATCC
AAGACTTCACGAAAATCAATGATTTTCAATGGAATTTTCAACAGTTTGAT
ACTGAAAGATGACATTTTAATGTAAATTTTGGCTAATACTTACTGTTTTG
AAGCCTGAATAGCGATTTTTACAAGTTTTGGCGTTATTTATGGCCCTAAT
GGCGTAAGCCCAAAATTAGGCTGTGGCGGAATAAGGGCCGGCGTAAAAGA
GGCCTGATAAGGTAACTCTTTCTAGAGCCGTCGCAACCTTTTTAAAGTTT
TGGTAGATTTTCTTCTTGCAGGATTTCTTCCTGGTGGCTTCACTTTAATT
GTTTTTTGTTATTGGGAAGATTCGTGATTCGTTTTTTTTTTACTCACCGT
TTGAATCAAATTGAAATTTAGCTTAGGGTGGTCTGCACTGACACTTTGAT
GGTGCGGGGAGCGGAAGATGAGGAATTTCAAAAACCTATATTGTTTTATG
ATTTAAAAAACCTATCTATATCCCCGATTTTTTGTTAAAAAACTGAATTT
TTTTAGCTAGAAATATACTTTGAAAACGGCTCTGGCCGAAACATGTTGGA
AATTTCTAGCATCTAATGGTATTTTTGTCTCGATCCTCCGTCCGATATAT
ATATCCCCGTTCCTGGTGTAATGTAGCCTACCTTCTAGGACCCCTTCTTA
ATACAACCATGAGTTGTCAGATCTTATTCTTATCTCTTCTCGTTTTTTTC
ATCAGGAGGAGATGTCAGAAGACGCAGAACTCCAATCCAAAACCTTGGCA
ATGAGGATCCAGGGGAAAATTGCCAGCAAGATGTCAACCAAGGGGCTAGC
TAAGCAGGTGGTAGATGGCCCCACGTCAGACCTTATCGATGATTGTTACA
AAATCGCCAAAATTTATCTTGGGAATAAAAAAGACGCCGAAAAAGTGATG
AAAAATATGATCAAGATTGTTGTGAAAGTTGCCATTTTATCTCGGAATAG
TGTATTTTCAGATGATGAGCTTATCCTGGTACGANCAAGATTGTTGTGAA
AGTTGCCATTTTATCTCGGAATAGTGTATTTTCAGATGACGAGCTTATCC
TGGTACGTGATTTTCAGAAGAAATTTAAAACCATTGCAAAAACAATCATC
AGTTTTTATGAAGTTGATTTCACATTCGATGCTGAGTATATGATCAAAAT
TATGGGTGAGTCAAAAGAACTGTTAAAGAAATCTGTTAAGAATCACCTAA
CGGAGAAATCTTTGAATCGCATAGACAGTGTTTATACCGTGTATTCGAAT
GAAGCTCTCCTCAGTGACGCGTTTACACCCGATTCAAAATACAGATCACA
TCTGGGAAATATCGTCAAAGGCCTGAATACGCTGATAGAACAGGGTGAGC
TATGATTGGTCGATACGGATCATGTGATTTTTACGTTTTTTCAAAAATCT
TCTAATTTTTTTCCGTTGTTTTTTTTGTGACTAAAGTATTATCTAATTAG
GCTTCCTTTTTAAAATAATGAAATTCCTTATTTTCTAATAGAAATTTTAC
GACAAAATGATGAACAATTTTTTTAAGACTATATGATAATAGTTACCTAC
TTATACACTGCTTGCCCCTTTCCTAGGAGATTTTATTGATGATTTTTAGG
AATTTTTAGAGATAGAAAACAAATTTCTTTTATTTTATTTGTGTATTATA
CTTTTGTTATATGGACATTTTTTGTAGCATAGAAGGTCGTTTCGTTTTTC
TCCTCTTTTAGTGCCAAACGTAATTTTTGCGTTGTGTTCAGGTGAGAAGC
TTCTTAATTGGTTATCTCTAAATTTTGGGCTAGTTTTTCCTTTTTCGTAA
TACCTAGATTTTTACAATGAACTTTTAGAGATAAATTTCAATCAATCAAT
TGCCATAAATTTTTTTAACGGAAATCCTTTCTCGAAAGTTTTTTAATACA
GGCAATGGGTAATGAAAAAATATAATTATCACATAGTTCAAGCCACAGCC
CCTTCCACATGTCTCAGTTAGCTGTTGAGTCTGTAAACAAGCCCTCTCCC
CCCGCCACTCTTCAGTGAACGTCCACGGACTAACTTAACCTTCTGCCCCC
TGTTTGTTTTCCCGCTCCTCCACTTATTTAACAACGTACTTACGCCCAAC
GTACGCCCCAAGCACCCGTCCCTTTAACTATCTATCCTGCTAACCCTCGT
GCATTAGGTGTATTTTAGCATTTAGGTATTAGTTTATTTCGAGGGAAACT
TATTTTTTCTGTACTGTATTACGTTTACTATACCAATTTTTTTCTAAGCA
CGCATATGTACTTTGTAATATTCATTACACTTTTTAATTTTTTGTCGTTT
CTGTAATTTTTTTCCTTTTTCTTTCTTTGTAAACTTTTTTTAGCAGTTTA
TTTTGTAAAAAGTCAAAAGTATGATATAAAAGATAAAACGATACATCTAC
TAAATCTTAC Coding sequence (CDS) from alignment at sc0000217:156061..161770- >TCONS_00015841 ID=TCONS_00015841|Name=TCONS_00015841|organism=Clytia hemisphaerica|type=CDS|length=738bp|location=Sequence derived from alignment at sc0000217:156061..161770- (Clytia hemisphaerica)
GAGGAGATGTCAGAAGACGCAGAACTCCAATCCAAAACCTTGGCAATGAG
GATCCAGGGGAAAATTGCCAGCAAGATGTCAACCAAGGGGCTAGCTAAGC
AGGTGGTAGATGGCCCCACGTCAGACCTTATCGATGATTGTTACAAAATC
GCCAAAATTTATCTTGGGAATAAAAAAGACGCCGAAAAAGTGATGAAAAA
TATGATCAAGATTGTTGTGAAAGTTGCCATTTTATCTCGGAATAGTGTAT
TTTCAGATGATGAGCTTATCCTGGTACGANCAAGATTGTTGTGAATGGTA
GCTTTGACAGAGAAAGAGAAAGAAGCTTTGGGAAAACATATTCGGGATGC
TGAAAACTCTGATTCTGGGGAGGAGATGTCAGAAGACGCAGAACTCCAAT
CCAAAACCTTGGCAATGAGGATCCAGGGGAAAATTGCCAGCAAGATGTCA
ACCAAGGGGCTAGCTAAGCAGGTGGTAGATGGCCCCACGTCAGACCTTAT
CGATGATTGTTACAAAATCGCCAAAATTTATCTTGGGAATAAAAAAGACG
CCGAAAAAGTGATGAAAAATATGATCAAGATTGTTGTGAAAGTTGCCATT
TTATCTCGGAATAGTGTATTTTCAGATGATGAGCTTATCCTGGTACGANC
AAGATTGTTGTGAATGGTAGCTTTGACAGAGAAAGAGAAAGAAGCTTTGG
GAAAACATATTCGGGATGCTGAAAACTCTGATTCTGGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
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| TCONS_00015841-exon-sc0000217-1575043694:161479..161770 | TCONS_00015841-exon-sc0000217-1575043694:161479..161770 | Clytia hemisphaerica | exon |
| TCONS_00015841-exon-sc0000217-1575043694:156061..157765 | TCONS_00015841-exon-sc0000217-1575043694:156061..157765 | Clytia hemisphaerica | exon |
| TCONS_00015841-exon-sc0000217-1510915933:161479..161770 | TCONS_00015841-exon-sc0000217-1510915933:161479..161770 | Clytia hemisphaerica | exon |
| TCONS_00015841-exon-sc0000217-1510915933:156061..157765 | TCONS_00015841-exon-sc0000217-1510915933:156061..157765 | Clytia hemisphaerica | exon |
| TCONS_00015841-exon-sc0000217-1491911889:161479..161770 | TCONS_00015841-exon-sc0000217-1491911889:161479..161770 | Clytia hemisphaerica | exon |
| TCONS_00015841-exon-sc0000217-1491911889:156061..157765 | TCONS_00015841-exon-sc0000217-1491911889:156061..157765 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| sc0000217 | supercontig | sc0000217:156061..161770 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
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| IPR008477 | DUF758 |
Blast
BLAST of TCONS_00015841 vs. Swiss-Prot (Human)
Match: TP8L2 (Tumor necrosis factor alpha-induced protein 8-like protein 2 OS=Homo sapiens GN=TNFAIP8L2 PE=1 SV=1) HSP 1 Score: 99.7525 bits (247), Expect = 1.941e-23 Identity = 49/122 (40.16%), Postives = 76/122 (62.30%), Query Frame = 1
Query: 574 KIVVKVAILSRNSVFSDDELILVRDFQKKFKTIAKTIISFYEVDFTFDAEYMIKIMGESKELLKKSVKNHLTEKSLNRIDSVYTVYSNEALLSDAFTPDSKYRSHLGNIVKGLNTLIEQGEL 939
K+ +KVA+L RN F EL L F++K + A T +SF EVDFTF+A + ++ E +++L + V++HLT KS RI V+ +S+ LL+ + PD + HLG I GL L+++G+L
Sbjct: 65 KVAIKVAVLHRNGSFGPSELALATRFRQKLRQGAMTALSFGEVDFTFEAAVLAGLLTECRDVLLELVEHHLTPKSHGRIRHVFDHFSDPGLLTALYGPD--FTQHLGKICDGLRKLLDEGKL 184
The following BLAST results are available for this feature:
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