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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00015832 ID=TCONS_00015832|Name=TCONS_00015832|organism=Clytia hemisphaerica|type=transcript|length=2560bpRun BLAST on NCBI transcript from alignment at sc0000217:73813..88979- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00015832 ID=TCONS_00015832|Name=TCONS_00015832|organism=Clytia hemisphaerica|type=transcript|length=15167bp|location=Sequence derived from alignment at sc0000217:73813..88979- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00015832 vs. Swiss-Prot (Human)
Match: RRNAD (Protein RRNAD1 OS=Homo sapiens GN=RRNAD1 PE=2 SV=2) HSP 1 Score: 112.849 bits (281), Expect = 3.473e-26 Identity = 63/177 (35.59%), Postives = 100/177 (56.50%), Query Frame = 2
Query: 1307 SEFYGFPMSDFIRKIPVQPLKYKSFETACHFLGDYADKLLGNSPNIKLHCYRAIMEVFIRHVDPSLVLAAIRCKKIKNASAMSFEEYAAKVFERL----KLPFHESQLEEINYKEMLKQTKNVTVIHSLALLLGPLIESIALMDKYMFLVESGFETELIPIFDPKISPRNFAVIATR 1825
S+ G+P+S ++ +P L Y+ E ACH L +YA++L P ++ HCYRA +E IR P L + + I + EEY + +R+ +LP + + L+ + Q V SLALLL PL+E++ L+D+ ++L E GF EL+PIF P++SPRN ++AT+
Sbjct: 291 SDPGGYPLSQWVAGLPGYELPYRLREGACHALEEYAERLQKAGPGLRTHCYRAALETVIRRARPELRRPGV--QGIPRVHELKIEEYVQRGLQRVGLDPQLPLNLAALQA-----HVAQENRVVAFFSLALLLAPLVETLILLDRLLYLQEQGFHAELLPIFSPELSPRNLVLVATK 460 HSP 2 Score: 107.071 bits (266), Expect = 3.443e-24 Identity = 67/199 (33.67%), Postives = 109/199 (54.77%), Query Frame = 2
Query: 86 NQMKVCLTQAFMFLNEYQWIANSYVAEFFTQDLWSRLPEAWRKCFEEATLDDIANNILLSSAHKS---YKSVWPLSLLSFIATCHGLSLNR----QQKEEF-KNPTKLPKEIADVFKKHIKPKKRHELAILPDLVNHVCERTKVKNVVDVGSGLGHMARVLAYKYGCNVTAVERTEEQLPIARQYDLQ----IEKELRR 646
Q+ V LT+ Y+ I ++Y+ EFFT +LW LP +W++ + +A +L Y+SVWPL+LL+ +T L+ R Q EF +NP++ + A F+KH++PKK+HE+ L +LV + + T VVDVGSG GH++R +A G V ++E + + A++ D + +EKE +R
Sbjct: 15 KQLAVNLTRVLAL---YRSILDAYIIEFFTDNLWDTLPCSWQEALDGLKPPQLATMLLGMPGEGEVVRYRSVWPLTLLALKSTACALAFTRMPGFQTPSEFLENPSQSSRLTAP-FRKHVRPKKQHEIRRLGELVKKLSDFTGCTQVVDVGSGQGHLSRFMALGLGLMVKSIEGDQRLVERAQRLDQELLQALEKEEKR 209 The following BLAST results are available for this feature:
BLAST of TCONS_00015832 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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