TCONS_00015808 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00015808
Unique Name	TCONS_00015808
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1464

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0000217:240114..247972+

transcript sequence

>TCONS_00015808 ID=TCONS_00015808|Name=TCONS_00015808|organism=Clytia hemisphaerica|type=transcript|length=1464bp
CTGGTAAAAAATGAACTATAATTGGTCACTTAAAACCGTTTGGTTCTCAC
AGACCTCCAACAAAGGTTGAAGAATTGAAATATATGATTTCgcctgaaga
tttttacatgaattttgTTATCAAGCACAAGCCAGTTCTATTTAAAGGAG
TAACAAAAAACTGGCCAGCTTATACACAATGGAATGATGAATATTTGAGA
GATCATTATGGCGATAATGAAATGAACATGGAAACAAAAGATGATGATAA
ATACAATCTTCCAACATCAAGAACATTCAAAGATTTTCTGAAAGTTTATA
AAGATTCAAATATTTATATGGTAGATGAGGTCTTACCAGAGATGAGAGAA
GACATTATATTACCCCATTGTTTACGTTGTGAAGAAATGGATcgcttttt
ctttgtttcttatTATTGGCATTCGAATGGTAACACAATGTCAACGGTAC
ACGTCGATACTGATGAAAATCTACTATGCGTCGTCACAGGTCATAAAAAG
GTCATTTTAGTATCACCTTTGTACAGCCACGATCTTTACGCGAACGGTGC
GCGTAGAATGGGCGTTCTAGACTTGAATGCCAGTGCAGTTGACTTGGAGA
GATTTCCGAAAGTGATGAATGTTCCTTACTATGAAGCATCAGTTGAAGAA
GGTGATTGTGTTTACATTCCACAAATGTGGTGGCATCAAGTCTATTCGAG
GAAGGAACGTCAGCAAGCAGTCTCTTTGTGGTGGAAGTCAAAACCTTTTT
GGAGGAAAGTCAAAGACCAAAACCCGTCTCTATCTGGACCCATGTCCAAT
GaCGAAAAAGGCTTTTCATATGCAGACGCACTCATCGATTATGAGAATTG
GGTTCAAAATGTGTCCGAATCGATTGTCCGAATTCGCTGTCAAGAACAAG
ACGTCAGAATGAGCCATTATGAATGGGAAACGGACAAAGATCCGAATGCA
CCGACAACGCTAGGTGACGGCGGAGACTTTGAAGAGGTAGTCTGAGATTT
cagaaataaaaagtaataGTTGgcaaagatcaaaatttgactaaaaatga
tttttagtttgatttGCGAAATTTTAGGCTCGGTCGAGCCcgaaaaaaac
ttaatttttttcagtggtcaaagcaatatttttcttctgaaaagTCTTAT
ATATCCTTggtctgagacggaaaatgggTTTTGCACAGCAAATTAGCaga
tattcttgaaattttgatgaattaGGCAAATTTTTGAGACGGAAAACCTC
ATTATAAACTTCACTAAGACGGAAATCCGCAtacatgttttgttttttta
taagcatacaaaaatccgaaaacaggctcagagatgcttaggtcgaaagc
ttaataaggctgaaaaatgcttgaggggatgtttaaatctaaagcataaa
tttagggaaatactgaaaatccgtaaaattccagccaaaaaaagccaaaa
tcaggaaaaaaaca

Run BLAST on NCBI

transcript from alignment at sc0000217:240114..247972+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00015808 ID=TCONS_00015808|Name=TCONS_00015808|organism=Clytia hemisphaerica|type=transcript|length=7859bp|location=Sequence derived from alignment at sc0000217:240114..247972+ (Clytia hemisphaerica)
CTGGTAAAAAATGAACTATAATTGGTAATTCTTGCATAATTTCTCTATTC
AATACCATGAACATGCTTCTCACATCAACAAAAATTGTGGAATATTTAGA
GTTGGTTGGCTGAGGTTGTGTTTGGTGTTGTTGGTAGTTTCTCTTAAAAT
ACAAATTATTGTTCACAATATATTCAATATTATACAGACGTAAACCAAAG
ATTTAAACCACAATAACTACAGCTAAAACCACTGATGAGGAAAAGACAAC
CCATTTTTTGCATAAATGCTCAGTTGGGTGCtaggaaaaatgttttcaat
tcaAATTATCCATTGTGATTGAGTGTCAATTGTGCATGTATCTAATCACT
TTTATACAAAGGGTGCTTGTTTTTCAGGCATTTTATTCTTGCAAGTATTT
AAGCAAAGGTTCCCAAGAATGAATTAAAATCTAAGATAATATTGCTAGTC
AGGTTTAACTTTGGTACTTTTTCGTCATCTGCCAagtgaaaaattgtttt
gttgtaTTGTTTAAACtggattgtttttatattaTCTCAAACCTTGTTTG
TATTCTAAAGTGTTGAGAATGTTCTGTTTAAAAGCTTTTGCAATTTTAAT
GCAAAAAATAATTCTGGTACCATGTGTGCtacaaaaattgtcaaaaattt
tgattgtgggatcgaaatttgaaaaattagattttttgaaGCTTGAACCT
GACTAAGTTCCTTTTTTGTTACTTGGTCAACaggaaattaaatatttttt
tggttcGTCTAACATGATGgttgaaaaagataaaatacattaattttcaa
aaaaagggtcTGTATTTGTTTATTATAACCTTATCTACAGAAACATATCA
TCAGTTGAAAAATATGATTAATTATGTGCAATTATTTATTTCTGCTTGAA
ACTTAGTTCCTTTTTTTGTATATACCTTTGTCTTTAAACACATATGATCA
TCTAACActtaattttaataaatataTAGTAATAATTTGTAATTTTAAAA
GGCACAAAAATTAGTCACACAAGAATTTAATTGGATTAGAATAATCAATC
AGGAATAATTACTGCAACtattgtaataaaaaaattaaaagaaatgaaaa
ttgataCTGTAATGGCAATAAAAATTCAAACTATTCTATTATTTTTGGAT
CCTatattttgacttttctttGTTACAGTACCCTATATACACTCAAAATA
GTTTGAAATtcagataggtagcttttttttGCTGTGTTGAGTGTGGTGTT
TGGTGTTGAATATACAATGTTTAAAATAATTCTCATGATATAGAAACAAT
AATTTTCAACTTTGTTAGATTATACTAAATGCTagatatgaaaatgaaaa
tctttccaAAACTTATAATTGGTATAACTATATGCTTTCTTATGATTGGC
TTTGGTAATCTcaatcaacaattttgtccaaTTTTGCAGTCTTCACGTGA
GGATATCAATTCAGACTTCTCCAGCCTGGGGATGTTCTTAAATGGTTTGT
TGCATGCTTTAATAAATCTTTAGCCATTCAGGatttcatgttgaataatt
aaaaactccagcattagAACAATTCCACGTAAATGAATTATCATTTTGTG
TGCACAAATTTATTTCTTATCATTGTTTCGTTCTGGagtttttattattt
aaaatgATGTCTTTACTAGCAAAAGGTTTATTCTTACGTTTTATAtgtat
gaaattgaaaatattccctgtatttgaaaatttctatgcctgtcccttga
aaattgaattagaaaAAGTCAACCGTGGATCAGCAACTGAACTCTATTTA
TAGTTATCCTTGTAAAAGTCTTTTATCTTCTAATAAGTATCtgacatttt
aagaaaatttattgaaaatttgtatcATGTATCTTGTTTTGTTGAAATCA
TCAAAATGCTTTATAAATTatattctttttggacctaccccggtggggta
gaggtcctataaattaaccgatgtccgtccgttcgtccgtctgttcgtcc
gtccgtccgtctgttaacAGCTTTTCttaggattggctcattagtttttt
ttgatttttggcaccatgatgcaaaatggtaatgcccaaaatgtgacgga
gccagattttcgaaaaaaatttatttccggccgaaaatgccggaaatatg
ccggaaaaaccggttttttggcattttctcaagatttcatcattagtttt
ttctgaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNtttttccggtcgaaaatgccggaa
gtatgccggaaatcgccatttttgcagattttcatcggaatttttcctta
tatttcgttgtttttcacacaaaaacattattattagcGATTcccaccat
gaagcatggttcaatcgtcaatagaactgagttttgaagccggaactttc
taaaaatcgccggtgcagcccattttcgccggaAAAACGGTATTTCTTGA
TTTTCTCGAGCTGTACTTTATATTTTTTTATGAaatttttgcacactgat
gcaaaatgataatacctaaaatgtgacggagcccgattttggaaaaaaaa
attttccgccggaaaaacaggttttttggcattttctcgagattttatca
ttagttttttctgattttttgctcaaagatgcgtattaacaatgcccaaa
acatggccgagtccgatttttgataaaaaattttttcaggccgaaaatgc
cggaaatatgccggaaaaactgtttttttggtattttctcgagatttttt
cattagtttttgctgattttttgcttaaagatgcgtattaacaatgccca
aatcattgtcgagtccgatttttgagaaaaagatttttccggccgaaaat
gccggaaatatgccggaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNtaaaaaaattattgataacaataccaccatcaagcatgattcaattgt
caataaaacttttgcaattctgcaaccggaactttctatttctttttttc
ctaaacccctccccccccatcaacaatcaatgatgacatttaatgcattt
tcgctaagcgctatattttcttaatgattgtttttctccttattgctatt
taagtttcatcatcaggtaggtccattcagcatgttgcttgttttaacTA
GGTCACTTAAAACCGTTTGGTTCTCACAGACCTCCAACAAAGGTTGAAGA
ATTGAAATATATGATTTCgcctgaagatttttacatgaattttgTTATCA
AGCACAAGCCAGTTCTATTTAAAGGTATTTATTTATCATTACatgatttt
tctaaataaaGGAAATCTTGCCATATTTGAGTGAATTTAAGCCAAAATCG
TTTGCATGTTTAAGGGAAGTTGTCTTCACTTGACAAAATGTTATCAGGTG
AAATTTTAGGGCTTCTTGAGCCAAGGTTGTTTGAAAAAGCTCTTttatat
tgggctcttccagaaaatgtccgtggTATATTGTCCGGGgttagcgaaaa
atcaaaatttgccttgtccggggggtaaatttgctctgtctgggggtaaa
acccgttttccggggggcaaaaGTCACGACAaagggggtaaatcactgaa
aattgttatatcctccacccccccccccccNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNcccccccccccccccccccatattcaattttt
tttctagaaaagccaATTGGTAATTTTTTAAATACGCATCAATTTATTTG
AATTTCCATAAACTTATTCAGGAGTAACAAAAAACTGGCCAGCTTATACA
CAATGGAATGATGAATATTTGAGAGATCATTATGGCGATAATGAAATGAA
CATGGAAACAAAAGATGATGATAAATACAATCTTCCAACATCAAGAACAT
TCAAAGATTTTCTGAAAGTTTATAAAGATTCAAATATTTATATGGTAGAT
GAGGTAGTTACATGTCAGAATATtcattaaaaatagaaaatgctaTATCA
TTTGTTATCTATGTGTTAAAGGTTAAGCGATGCTTCAATAGTGCACTACA
AGGTGAAGGAGCatgattttttcagaaaaaatacacaatttgcTTCACAT
TACTTTTAAGTTTCATGTTAATACAATCATCAGATGTACAAGACATtata
tcattgatatcatttgTTATCTGTATAACAATCGAGAAATGGTTATATCA
GTTTTATGTGTGATTTTGTAATTTCAGCATAATTTGAATATCTGCAGGTC
TTACCAGAGATGAGAGAAGACATTATATTACCCCATTGTTTACGTTGTGA
AGAAATGGATcgctttttctttgtttcttatTATTGGCATTCGAATGGTA
ACACAATGTCAACGGTACACGTCGATACTGATGAAAATCTACTATGCGTC
GTCACAGGTCATAAAAAGGTATTTAGAGTACGTTTGTAAGATTTAGTATT
GATAAAAAGAATCAGTACTTACAATCATGggcgtaatatttgagaaaaag
ggaCATTCActgggaagttttgaaaccacaatcgatttgtaagtgctcta
aagtacttcggaagggtagagttttaacatgagacttaagacttgaactg
aggatccaaaagttcaaaaatgatcCAATAAGGTTCATAATATAGCCTCg
aagtctataaacccgtgccaaattgaaatatgcgattaaatttaagaaat
ggcccaaaatcgacCTTCTCGCCCGAAccccaaatttcgaaaaacgagga
aataagcctaattctcaatagatttcgaccatgattgtacaacGGAGTTT
CGCTAATATTGAcgataaagtaaaaattttcataaactaAAGAAACTTAG
GGGTAAGAAGAAACTGTATTTTCAATTAACCCCTTGATGTTCCTTAATGT
TCGAACTGGATACATTTGAGTCTCTATTTTATACGAACCTCAATAATAAT
TCGAATGTCCCTTAAACTGGAACAAGATTGCTACTcgcttcagttaacaa
tgccatATAAACCTGTCTCCAATAAGAACAAGAAACTATATAAGAGGCTT
CGAAgaccgaaatattaagaacacattaagaatattttaaggctttatgg
acaaaaatatacaacaaatggtgaaaatggtgaaaataaaaccaTGTTTT
Ggcataaaacttaaaaagttaagaacatccaaaggcttcaaaagttttgg
atgctcttataaaaaagtgtattgtcCAGAATGGCGAAAATTTAATCAAC
TGATACGTTTTATTACAGGTCATTTTAGTATCACCTTTGTACAGCCACGA
TCTTTACGCGAACGGTGCGCGTAGAATGGGCGTTCTAGACTTGAATGCCA
GTGCAGTTGACTTGGAGAGATTTCCGAAAGTGATGAATGTTCCTTACTAT
GAAGCATCAGTTGAAGAAGGTGATTGTGTTTACATTCCACAAATGTGGTG
GCATCAAGTCTATTCGAGGTACACATTTTTTTCCATTAGCAAATCCACTT
TTCGGGTAGGCCATGGGGTCGcttagaattttttgaaaagtttgctTCAC
CtttagagaagaaattttcgcggaatttaatttcgcggcgGAGAGGAAAT
TTGACCTACTctgccctaaaaagaccaattttatagGTGATTTTTAAATC
TTGAGAATGTTCATGTTTCGCGGATTTGTCataaaaaaccgcgaaaattt
gttctgcgaaaatttcttcccttaaggtaccccTGTTATTATGGgtgcca
tccatatagtacgtacgcagtgaagtgGGGAGAGGGGgatttagcaaaag
cgtacatctattgtttaaatgacatcatttctattgttctctgcgtacaa
gggggagggggtatccaatttttggaaaatctttgcgtacgttctatatg
gacggccccatGTTATTCCTTTAGTGGATGAAACTAATATCATTGCAATT
CGTTGACTCTTACTTTTTTACTATCTGGTATTTTAACCAAATACTGAGAC
ctaaaaatacaactttttcaCGTCCTTCAAtctaaaaaataccccaaatT
ACTTTACAAGGTTTCGAAACAGCTTTTCACCGTCTATTGTtagatattat
tattatattattattatacgGTGAATTTTGTGAACGTTGCAGACGTTTCA
TGCAATTTAGGCAATAACTTTATTTCTCATTCTGCTCTAGGAAGGAACGT
CAGCAAGCAGTCTCTTTGTGGTGGAAGTCAAAACCTTTTTGGAGGAAAGT
CAAAGACCAAAACCCGTCTCTATCTGGACCCATGTCCAATGGTAAATCAA
TACTTTAAGGGAACTAAGTTTGCAAAAATAAGTTATATTTCGCATAAATT
GANATCAATACTTTAAGGGAACTAAGTTTGCAAAAATAAGTTCTATTTCG
CATAAATTGACACTGGGTGAAATAAGCGATTTCCAATCCtgaaaatatct
taaaaatatGGTATTTTGGAAATACAGTATGATATTTCCAAAAGTTAGAA
ATATTTAGAAAATATGATGTTTCGATCctggaaatatcatgaaatatgat
atttcctaaactttggaaatatagaaaagtcatatttccatatttactaA
TGTTCATGGAAATATcacattttcaagatatttccagagTTGGAAATCTc
tttatttcgcccagtgtgaAAATCAGTTTCGAGCTGAtctttgaaaatca
ttttgccaaaatttatcATTGGTCATATAATGCCCTGTTATCTAGCCGAG
AACCCTGAGACAAAGTtgctttcaaaattatttttgatattttcagaCGA
AAAAGGCTTTTCATATGCAGACGCACTCATCGATTATGAGAATTGGGTTC
AAAATGTGTCCGAATCGATTGTCCGAATTCGCTGTCAAGAACAAGACGTC
AGAATGAGCCATTATGAATGGGAAACGGACAAAGATCCGAATGCACCGAC
AACGCTAGGTGACGGCGGAGACTTTGAAGAGGTAGTCTGAGATTTcagaa
ataaaaagtaataGTTGgcaaagatcaaaatttgactaaaaatgattttt
agtttgatttGCGAAATTTTAGGCTCGGTCGAGCCcgaaaaaaacttaat
ttttttcagtggtcaaagcaatatttttcttctgaaaagTCTTATATATC
CTTggtctgagacggaaaatgggTTTTGCACAGCAAATTAGCagatattc
ttgaaattttgatgaattaGGCAAATTTTTGAGACGGAAAACCTCATTAT
AAACTTCACTAAGACGGAAATCCGCAtacatgttttgtttttttataagc
atacaaaaatccgaaaacaggctcagagatgcttaggtcgaaagcttaat
aaggctgaaaaatgcttgaggggatgtttaaatctaaagcataaatttag
ggaaatactgaaaatccgtaaaattccagccaaaaaaagccaaaatcagg
aaaaaaaca

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_008843	XLOC_008843	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000217	supercontig	sc0000217:240114..247972 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.66423	2.18044	11.733	11.1253	9.02434	5.56445	6.76438	7.43539	6.77469	7.33953	5.40452	4.90119	2.99924	1.45379	4.64843	5.71612	1.70149	2.79102	2.77657	3.62253	2.78343	3.13823	3.35799	2.68082	1.53578	2.41949	3.63087	2.4469	3.28093	3.20709

Blast

[Close]

BLAST of TCONS_00015808 vs. Swiss-Prot (Human)
Match: KDM8 (Lysine-specific demethylase 8 OS=Homo sapiens GN=KDM8 PE=1 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 1.317e-18
Identity = 59/227 (25.99%), Postives = 106/227 (46.70%), Query Frame = 3

Query:   90 SPEDFYMNFVIKHKPVLFKGVTKNWPAYTQWNDEYLRDHYGDNEMNMETKD---DDKYNLPTSRTFKDFLKVY-----KDSNIYMVDEV---LPEMREDIILPHCLRCEEMDRFFFVSYYWHSNGNTMSTVHVDTDENLLCVVTGHKKVILVSPLYSHDLYANGARRM-GVLDLNASAVDLERFPKVMNVPYYEASVEEGDCVYIPQMWWHQVYSRKERQQAVSLWW 734
            S + F   F++  +PV+ KGV  +WP   +W+ EY+++  G   + +E      D++++  T  T  +F+  Y     +D       ++   +PE+++DI +P      + +        W     T+S +H D  +N L  V G K + L SP  S  LY +    +     ++    DLE+FPK    P+    +  G+ ++IP  +WH V +  +   +VS WW
Sbjct:  191 SLQHFREQFLVPGRPVILKGVADHWPCMQKWSLEYIQEIAGCRTVPVEVGSRYTDEEWS-QTLMTVNEFISKYIVNEPRDVGYLAQHQLFDQIPELKQDISIPDYCSLGDGEEEEITINAWFGPQGTISPLHQDPQQNFLVQVMGRKYIRLYSPQESGALYPHDTHLLHNTSQVDVENPDLEKFPKFAKAPFLSCILSPGEILFIPVKYWHYVRAL-DLSFSVSFWW 415

The following BLAST results are available for this feature:

BLAST of TCONS_00015808 vs. Swiss-Prot (Human)

BLAST of TCONS_00015808 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
KDM8	1.317e-18	25.99	Lysine-specific demethylase 8 OS=Homo sapiens GN=K...	[more]

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TCONS_00015808 (transcript) - C. hemisphaerica