XLOC_008843 (gene) - C. hemisphaerica

Overview
NameXLOC_008843
Unique NameXLOC_008843
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0000217:240114..247972+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_008843 ID=XLOC_008843|Name=XLOC_008843|organism=Clytia hemisphaerica|type=gene|length=7859bp|location=Sequence derived from alignment at sc0000217:240114..247972+ (Clytia hemisphaerica)
CTGGTAAAAAATGAACTATAATTGGTAATTCTTGCATAATTTCTCTATTC
AATACCATGAACATGCTTCTCACATCAACAAAAATTGTGGAATATTTAGA
GTTGGTTGGCTGAGGTTGTGTTTGGTGTTGTTGGTAGTTTCTCTTAAAAT
ACAAATTATTGTTCACAATATATTCAATATTATACAGACGTAAACCAAAG
ATTTAAACCACAATAACTACAGCTAAAACCACTGATGAGGAAAAGACAAC
CCATTTTTTGCATAAATGCTCAGTTGGGTGCtaggaaaaatgttttcaat
tcaAATTATCCATTGTGATTGAGTGTCAATTGTGCATGTATCTAATCACT
TTTATACAAAGGGTGCTTGTTTTTCAGGCATTTTATTCTTGCAAGTATTT
AAGCAAAGGTTCCCAAGAATGAATTAAAATCTAAGATAATATTGCTAGTC
AGGTTTAACTTTGGTACTTTTTCGTCATCTGCCAagtgaaaaattgtttt
gttgtaTTGTTTAAACtggattgtttttatattaTCTCAAACCTTGTTTG
TATTCTAAAGTGTTGAGAATGTTCTGTTTAAAAGCTTTTGCAATTTTAAT
GCAAAAAATAATTCTGGTACCATGTGTGCtacaaaaattgtcaaaaattt
tgattgtgggatcgaaatttgaaaaattagattttttgaaGCTTGAACCT
GACTAAGTTCCTTTTTTGTTACTTGGTCAACaggaaattaaatatttttt
tggttcGTCTAACATGATGgttgaaaaagataaaatacattaattttcaa
aaaaagggtcTGTATTTGTTTATTATAACCTTATCTACAGAAACATATCA
TCAGTTGAAAAATATGATTAATTATGTGCAATTATTTATTTCTGCTTGAA
ACTTAGTTCCTTTTTTTGTATATACCTTTGTCTTTAAACACATATGATCA
TCTAACActtaattttaataaatataTAGTAATAATTTGTAATTTTAAAA
GGCACAAAAATTAGTCACACAAGAATTTAATTGGATTAGAATAATCAATC
AGGAATAATTACTGCAACtattgtaataaaaaaattaaaagaaatgaaaa
ttgataCTGTAATGGCAATAAAAATTCAAACTATTCTATTATTTTTGGAT
CCTatattttgacttttctttGTTACAGTACCCTATATACACTCAAAATA
GTTTGAAATtcagataggtagcttttttttGCTGTGTTGAGTGTGGTGTT
TGGTGTTGAATATACAATGTTTAAAATAATTCTCATGATATAGAAACAAT
AATTTTCAACTTTGTTAGATTATACTAAATGCTagatatgaaaatgaaaa
tctttccaAAACTTATAATTGGTATAACTATATGCTTTCTTATGATTGGC
TTTGGTAATCTcaatcaacaattttgtccaaTTTTGCAGTCTTCACGTGA
GGATATCAATTCAGACTTCTCCAGCCTGGGGATGTTCTTAAATGGTTTGT
TGCATGCTTTAATAAATCTTTAGCCATTCAGGatttcatgttgaataatt
aaaaactccagcattagAACAATTCCACGTAAATGAATTATCATTTTGTG
TGCACAAATTTATTTCTTATCATTGTTTCGTTCTGGagtttttattattt
aaaatgATGTCTTTACTAGCAAAAGGTTTATTCTTACGTTTTATAtgtat
gaaattgaaaatattccctgtatttgaaaatttctatgcctgtcccttga
aaattgaattagaaaAAGTCAACCGTGGATCAGCAACTGAACTCTATTTA
TAGTTATCCTTGTAAAAGTCTTTTATCTTCTAATAAGTATCtgacatttt
aagaaaatttattgaaaatttgtatcATGTATCTTGTTTTGTTGAAATCA
TCAAAATGCTTTATAAATTatattctttttggacctaccccggtggggta
gaggtcctataaattaaccgatgtccgtccgttcgtccgtctgttcgtcc
gtccgtccgtctgttaacAGCTTTTCttaggattggctcattagtttttt
ttgatttttggcaccatgatgcaaaatggtaatgcccaaaatgtgacgga
gccagattttcgaaaaaaatttatttccggccgaaaatgccggaaatatg
ccggaaaaaccggttttttggcattttctcaagatttcatcattagtttt
ttctgaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNtttttccggtcgaaaatgccggaa
gtatgccggaaatcgccatttttgcagattttcatcggaatttttcctta
tatttcgttgtttttcacacaaaaacattattattagcGATTcccaccat
gaagcatggttcaatcgtcaatagaactgagttttgaagccggaactttc
taaaaatcgccggtgcagcccattttcgccggaAAAACGGTATTTCTTGA
TTTTCTCGAGCTGTACTTTATATTTTTTTATGAaatttttgcacactgat
gcaaaatgataatacctaaaatgtgacggagcccgattttggaaaaaaaa
attttccgccggaaaaacaggttttttggcattttctcgagattttatca
ttagttttttctgattttttgctcaaagatgcgtattaacaatgcccaaa
acatggccgagtccgatttttgataaaaaattttttcaggccgaaaatgc
cggaaatatgccggaaaaactgtttttttggtattttctcgagatttttt
cattagtttttgctgattttttgcttaaagatgcgtattaacaatgccca
aatcattgtcgagtccgatttttgagaaaaagatttttccggccgaaaat
gccggaaatatgccggaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNtaaaaaaattattgataacaataccaccatcaagcatgattcaattgt
caataaaacttttgcaattctgcaaccggaactttctatttctttttttc
ctaaacccctccccccccatcaacaatcaatgatgacatttaatgcattt
tcgctaagcgctatattttcttaatgattgtttttctccttattgctatt
taagtttcatcatcaggtaggtccattcagcatgttgcttgttttaacTA
GGTCACTTAAAACCGTTTGGTTCTCACAGACCTCCAACAAAGGTTGAAGA
ATTGAAATATATGATTTCgcctgaagatttttacatgaattttgTTATCA
AGCACAAGCCAGTTCTATTTAAAGGTATTTATTTATCATTACatgatttt
tctaaataaaGGAAATCTTGCCATATTTGAGTGAATTTAAGCCAAAATCG
TTTGCATGTTTAAGGGAAGTTGTCTTCACTTGACAAAATGTTATCAGGTG
AAATTTTAGGGCTTCTTGAGCCAAGGTTGTTTGAAAAAGCTCTTttatat
tgggctcttccagaaaatgtccgtggTATATTGTCCGGGgttagcgaaaa
atcaaaatttgccttgtccggggggtaaatttgctctgtctgggggtaaa
acccgttttccggggggcaaaaGTCACGACAaagggggtaaatcactgaa
aattgttatatcctccacccccccccccccNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNcccccccccccccccccccatattcaattttt
tttctagaaaagccaATTGGTAATTTTTTAAATACGCATCAATTTATTTG
AATTTCCATAAACTTATTCAGGAGTAACAAAAAACTGGCCAGCTTATACA
CAATGGAATGATGAATATTTGAGAGATCATTATGGCGATAATGAAATGAA
CATGGAAACAAAAGATGATGATAAATACAATCTTCCAACATCAAGAACAT
TCAAAGATTTTCTGAAAGTTTATAAAGATTCAAATATTTATATGGTAGAT
GAGGTAGTTACATGTCAGAATATtcattaaaaatagaaaatgctaTATCA
TTTGTTATCTATGTGTTAAAGGTTAAGCGATGCTTCAATAGTGCACTACA
AGGTGAAGGAGCatgattttttcagaaaaaatacacaatttgcTTCACAT
TACTTTTAAGTTTCATGTTAATACAATCATCAGATGTACAAGACATtata
tcattgatatcatttgTTATCTGTATAACAATCGAGAAATGGTTATATCA
GTTTTATGTGTGATTTTGTAATTTCAGCATAATTTGAATATCTGCAGGTC
TTACCAGAGATGAGAGAAGACATTATATTACCCCATTGTTTACGTTGTGA
AGAAATGGATcgctttttctttgtttcttatTATTGGCATTCGAATGGTA
ACACAATGTCAACGGTACACGTCGATACTGATGAAAATCTACTATGCGTC
GTCACAGGTCATAAAAAGGTATTTAGAGTACGTTTGTAAGATTTAGTATT
GATAAAAAGAATCAGTACTTACAATCATGggcgtaatatttgagaaaaag
ggaCATTCActgggaagttttgaaaccacaatcgatttgtaagtgctcta
aagtacttcggaagggtagagttttaacatgagacttaagacttgaactg
aggatccaaaagttcaaaaatgatcCAATAAGGTTCATAATATAGCCTCg
aagtctataaacccgtgccaaattgaaatatgcgattaaatttaagaaat
ggcccaaaatcgacCTTCTCGCCCGAAccccaaatttcgaaaaacgagga
aataagcctaattctcaatagatttcgaccatgattgtacaacGGAGTTT
CGCTAATATTGAcgataaagtaaaaattttcataaactaAAGAAACTTAG
GGGTAAGAAGAAACTGTATTTTCAATTAACCCCTTGATGTTCCTTAATGT
TCGAACTGGATACATTTGAGTCTCTATTTTATACGAACCTCAATAATAAT
TCGAATGTCCCTTAAACTGGAACAAGATTGCTACTcgcttcagttaacaa
tgccatATAAACCTGTCTCCAATAAGAACAAGAAACTATATAAGAGGCTT
CGAAgaccgaaatattaagaacacattaagaatattttaaggctttatgg
acaaaaatatacaacaaatggtgaaaatggtgaaaataaaaccaTGTTTT
Ggcataaaacttaaaaagttaagaacatccaaaggcttcaaaagttttgg
atgctcttataaaaaagtgtattgtcCAGAATGGCGAAAATTTAATCAAC
TGATACGTTTTATTACAGGTCATTTTAGTATCACCTTTGTACAGCCACGA
TCTTTACGCGAACGGTGCGCGTAGAATGGGCGTTCTAGACTTGAATGCCA
GTGCAGTTGACTTGGAGAGATTTCCGAAAGTGATGAATGTTCCTTACTAT
GAAGCATCAGTTGAAGAAGGTGATTGTGTTTACATTCCACAAATGTGGTG
GCATCAAGTCTATTCGAGGTACACATTTTTTTCCATTAGCAAATCCACTT
TTCGGGTAGGCCATGGGGTCGcttagaattttttgaaaagtttgctTCAC
CtttagagaagaaattttcgcggaatttaatttcgcggcgGAGAGGAAAT
TTGACCTACTctgccctaaaaagaccaattttatagGTGATTTTTAAATC
TTGAGAATGTTCATGTTTCGCGGATTTGTCataaaaaaccgcgaaaattt
gttctgcgaaaatttcttcccttaaggtaccccTGTTATTATGGgtgcca
tccatatagtacgtacgcagtgaagtgGGGAGAGGGGgatttagcaaaag
cgtacatctattgtttaaatgacatcatttctattgttctctgcgtacaa
gggggagggggtatccaatttttggaaaatctttgcgtacgttctatatg
gacggccccatGTTATTCCTTTAGTGGATGAAACTAATATCATTGCAATT
CGTTGACTCTTACTTTTTTACTATCTGGTATTTTAACCAAATACTGAGAC
ctaaaaatacaactttttcaCGTCCTTCAAtctaaaaaataccccaaatT
ACTTTACAAGGTTTCGAAACAGCTTTTCACCGTCTATTGTtagatattat
tattatattattattatacgGTGAATTTTGTGAACGTTGCAGACGTTTCA
TGCAATTTAGGCAATAACTTTATTTCTCATTCTGCTCTAGGAAGGAACGT
CAGCAAGCAGTCTCTTTGTGGTGGAAGTCAAAACCTTTTTGGAGGAAAGT
CAAAGACCAAAACCCGTCTCTATCTGGACCCATGTCCAATGGTAAATCAA
TACTTTAAGGGAACTAAGTTTGCAAAAATAAGTTATATTTCGCATAAATT
GANATCAATACTTTAAGGGAACTAAGTTTGCAAAAATAAGTTCTATTTCG
CATAAATTGACACTGGGTGAAATAAGCGATTTCCAATCCtgaaaatatct
taaaaatatGGTATTTTGGAAATACAGTATGATATTTCCAAAAGTTAGAA
ATATTTAGAAAATATGATGTTTCGATCctggaaatatcatgaaatatgat
atttcctaaactttggaaatatagaaaagtcatatttccatatttactaA
TGTTCATGGAAATATcacattttcaagatatttccagagTTGGAAATCTc
tttatttcgcccagtgtgaAAATCAGTTTCGAGCTGAtctttgaaaatca
ttttgccaaaatttatcATTGGTCATATAATGCCCTGTTATCTAGCCGAG
AACCCTGAGACAAAGTtgctttcaaaattatttttgatattttcagaCGA
AAAAGGCTTTTCATATGCAGACGCACTCATCGATTATGAGAATTGGGTTC
AAAATGTGTCCGAATCGATTGTCCGAATTCGCTGTCAAGAACAAGACGTC
AGAATGAGCCATTATGAATGGGAAACGGACAAAGATCCGAATGCACCGAC
AACGCTAGGTGACGGCGGAGACTTTGAAGAGGTAGTCTGAGATTTcagaa
ataaaaagtaataGTTGgcaaagatcaaaatttgactaaaaatgattttt
agtttgatttGCGAAATTTTAGGCTCGGTCGAGCCcgaaaaaaacttaat
ttttttcagtggtcaaagcaatatttttcttctgaaaagTCTTATATATC
CTTggtctgagacggaaaatgggTTTTGCACAGCAAATTAGCagatattc
ttgaaattttgatgaattaGGCAAATTTTTGAGACGGAAAACCTCATTAT
AAACTTCACTAAGACGGAAATCCGCAtacatgttttgtttttttataagc
atacaaaaatccgaaaacaggctcagagatgcttaggtcgaaagcttaat
aaggctgaaaaatgcttgaggggatgtttaaatctaaagcataaatttag
ggaaatactgaaaatccgtaaaattccagccaaaaaaagccaaaatcagg
aaaaaaaca
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00015808TCONS_00015808Clytia hemisphaericatranscript
TCONS_00015809TCONS_00015809Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00015809-proteinTCONS_00015809-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000217supercontigsc0000217:240114..247972 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.28	3.87	19.92	20.88	18.23	12.57	12.67	12.66	13.05	13.3	11.75	11.59	6.61	5.05	9.37	8.97	6.73	8.23	6.86	7.76	6.02	6.13	5.92	6.43	3.93	4.44	7.03	4.08	6.03	5.87