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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00015743 ID=TCONS_00015743|Name=TCONS_00015743|organism=Clytia hemisphaerica|type=transcript|length=924bp
GTGGGCTTTTGCCTAGAACTTTTCATATATTGTTTGCGTAACATTCATGG
TATTCGATGATTCACAGAAAATCTGATTACATTGGGAGCTCTgcagaaaa
aagaattttctgaaGAATAGTGAAGGCCCACTGGAAAATGAGTGTAATGG
GTTCATCAAGATAATATTCTTGGAAGACTTTATCCATCTATTTGGACATT
TCACTAATCATCTCCAGATCATCACAATTTTCCTTTACGACAGATTCCAC
ATAATTTGCTGTCTGAGTGACTGCATGAACAGCCTTTGAGAATTTATCAA
GATTAAgcttattttcaccttttgacATGCTTTGGGCTTGAACTTGAGCA
ATGAGCTGCTCTTCCTTTTCAGCGAGAATACTTCGCGCTTCGTTGAAAGT
TTTCTTGATTAATTCAACGCTCGCTATATCTTCATCTATAACATCTTTAT
AAAAAGACTTTGCTTGTTGGAGACAATTACCCATTGTTTGCTTCTTGTCT
TTCATCTTTTCAAGTTTTTGCTTCAATTCCTCTTTAGCTTTGGCAGTAGT
TTCTGACACCAAGGAGATGTTATGTTGTTTGTGCTCTACACTGACCATAC
AATCAGTACAAACAACCACCTTGCATTGCTggcaaaaatatttcaacagc
TCATTATGTTTTGGACAGTAACGTTTCGGACTAGAGATTTTCTTTGTGAC
ATTTTGTATGTCAATAATTTTATGACTTACAAACCTGACACATTCTTGAT
GGTACTTTGTGCATCTTTGACATAAATTCAAAACACAAGTTTCGCAATGG
TTTGAAGCAGGAGACTCGGCGACACAATCTTGACAGAAAGGGCCTTTCTT
GCAGCATTTTTCACTTTGTCGATGATATTTTGTGCAATATAATTGGTAGA
TAGCTCAGATGCACCATTTGGGAC Run BLAST on NCBI transcript from alignment at sc0000216:80219..86164+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00015743 ID=TCONS_00015743|Name=TCONS_00015743|organism=Clytia hemisphaerica|type=transcript|length=5946bp|location=Sequence derived from alignment at sc0000216:80219..86164+ (Clytia hemisphaerica)
GTGGGCTTTTGCCTAGAACTTTTCATATATTGTTTGCGTAACATTCATGG
TATTCGATGATTCACAGAAAATCTGATTACATTGGGAGCTCTgcagaaaa
aagaattttctgaaGAATAGTGAAGGCCCACTGGAAAATGAGTGTAATGG
GTTCATCAAGATAATATTCTTGGAAGACTTTATCCATCTATTTGGACATT
TCACTAATCATCTCCAGATCATCACAATTTTCCTTTACGACAGATTCCAC
ATAATTTGCTGTCTGAGTGACTGCATGAACAGCCTTTGAGAATTTATCAA
GATTAAgcttattttcaccttttgacATGCTTTGGGCTTGAACTTGAGCA
ATGAGCTGCTCTTCCTTTTCAGCGAGAATACTTCGCGCTTCGTTGAAAGT
TTTCTTGATTAATTCAACGCTCGCTATATCTTCATCTATAACATCTTTAT
AAAAAGACTTTGCTTGTTGGAGACAATTACCCATTGTTTGCTTCTTGTCT
TTCATCTTTTCAAGTTTTTGCTTCAATTCCTCTTTAGCTTTGGCAGTAGT
TTCTGACACCAAGGAGATGTTATGTTGTTTGTGCTCTACACTGACCATAC
AATCAGTACAAACAACCACCTTGCATTGCTggcaaaaatatttcaacagc
TCATTATGTTTTGGACAGTAACGTTTCGGACTAGAGATTTTCTTTGTGAC
ATTTTGTATGTCAATAATTTTATGATTTACAAACCTCACACAACTCTGAT
GATATTCAGTGCATTTTATACACAAATTTAAAACACAAGTTTCGCAATGG
TTTGAAGCTGGAGACTCGGCGACACAATCTTGACAAAATGGGCCTTTCTT
TGcagcatttttcactttttcgatAATATTTTGTGCAATGTAATTGGTAG
ATAGCTCAGCTGCACCATTAGGGACCTATAACATAGATAAGTAATCTATA
TACATACATCTATAAACAGTTAAGCGACGCGGCAAGCTTGAGAGGAGACT
TACAAAAATTGTAAAGTTACAGTAGTAGTAAGAGTACTGATCCTGAGTGA
TTTACTCTAGAAGCAATTTTCTTAATATTTCTATTTAACTCTATTATCAT
TATTTCAATcgcttaaggtatgtgtacaccttttttccgattttttgtca
aaaaaatttttttcagtcaaagtggaagaaaagttactggatttcatttt
ggtaaaattgcgatcttaaaatctttttttgatctagagttataaccatt
taaatttcaaaacaaagttcgtcttatgatggattatttactcaaataat
tgtctctttcggaaacaacaaagacaaaagagagaattcagctgatgttt
attctcacctctattgaatagtaatatttttgacacatttcactgattaa
tcaaataaacagcaatcatctcgttaaaaatttcaaattgatgtagaaaa
aaacggaATTTTAacacaccatactacttttaacgaagttaaagtcaccc
atagcatttagatatcgacttcattctttttttatgagattcccaaaaga
tcaaacttaaaaagtgtcttaggattttatttctaaccgagttgtttTTC
CTCAATTTACAGATAACTGAAAAAATCACATTTTAATTTACTTTTGTATC
Gatgtttttacagaatttaggatttaaagagttaaagtcaattccaaaaa
aaatcccaagacacttttttagttcgatctattgggaacatagtatcgaa
attatttttNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNtaattatatcctgcccagttttttaaattcagctgaaacttttaccat
tagaaagagaatattattggctttcagaaaatatatacttttgatgtata
acaagtgatacttttattgACCTACCTGGTTACCAAAACTaaccaatgaa
cattgaaacaatgaaacacataagacataactggtcaaaatacaaaaata
tataaaatggaaGCATATCTATTGGTAGAAATTATCAATACTATTGAAAA
Atacttatgaaaaaaaagtaaaaagttattaaacgcttttctttataaaa
acaatacactatcagaaaaaacgcacagcttaataaagaaggtttctaga
aaacaaaaacggcgatttccggcattttcggccggaaaaaaaattttctc
aaaaaatcgaactctgTCATGTTTTGAGTAATGCgcatacgcatctttct
gcaaaaaatcagaaaaaaactaaggatgaaaattcgagaaaatgtcaaaa
aaaccggttttccggcatattcccggcattttcagccggaaaaaaatgtt
tttcgaaaatcgggctctgtcacactTTAGGtactgtcattttgcatcag
tgtgcaaaatttcataaaaaaatataaagtacagctcgagaaattcaaga
aatactgtctttccggcgaatagaggttgttccggcgattttttaatagt
tccgacttcaaaaatcaattctattgaaaattgaaaaatgcttgatggtg
ggcattgctattaataatgtttttgaaggaaaaaacaaccaattataagg
aaaaagtctaatgaaaattcagaaaaacggtgatttccggcatatttccg
gcattttcagctggaaaaatttttttctcaaaaatcggacccggtcatgt
tttgggcattgttaatacgcatctttaagcaaaacatcagaaaaaactaa
tgatgaaatctcgagaaaatgtcaaaaaaccggtttttccggcatatttc
cgttattttcggccggaaattttttttttcgaaaatcgggctccgtcaca
ttttgggcattgccattttgcatctttgtgccaaaaatcagaaaaaacta
atgagccaatctcgagaaaagctggtaacagacggacggacgaacatagg
ttaatttataggacctccaggtaggtccaaaaatttgttgttctaaagat
atgatcaattaaagagaatgtgtcaagaaaggtgaacacataccttaaaa
aACATAGAGCTAAAAAAAGCACCGACAACACCTTCTATGTGCACATCTTT
TATAATTGTATCATACATATGTCTATCTATAGGCAAATGGCTCAATTAAA
ATAGGAACAGGTAGAGATTATTTGCGCTCCAACGCAAAGATTCCCTCAGC
GAGAATAGAGTTTGTGCTAGAATAAGCTTCTGTGCTGCTTTCGTTTGAAG
ATGTCGCTTGAAAATGAGAATTTCCTGTGAATTTATTACCTCTCAGAGGC
CCCctccagcggcacccctaatcacgccatcacgcaaaaaaattttctca
atcaCGCATCaagaaaatcgctaaaatttgtcatcacgcaaaaaatagca
aaaaatagcccaaatcacgcatcacgcctcaaatttttgccctatcacgc
caaaaaaaaatctctaatcacgccatcacgcaagaaaaaagtcccaatca
cgccatcacgcaaaccactgggggGCCTCCTCTAAAACTGTACTGTTTAA
GGATGATTGATAGGTGTGTTCTGACTGTACCGTATCGNGGGGCTTTTCTA
AAACTGTACTGTTTAAGGATGATTGATAGGTGTGTTCTGACTGTACCGTA
TCGATCACAAACACCAGTGATGTTCTCTGATTGATCTCATAGAAGCAGTA
AAAGTAATATTCAGTAAGATCAgtaaaatattgaaacaaaCCTTGGTTTC
TTCTCGACATTCAGGGCATTTAACAGTTCTACTCTGAATCAGTTTGTCGA
TGCATCCCTCACATAAAGTGTGCATACAATTCAAAAGCTTTGGTTTTACA
AATTGATCCAAACAAACGCAACATTCCAACTCTTGTCCAACTTCCACACC
AGCCATTCTAGTAACCGTTCAGGATTATTTATTGGAAGCAGCTGATAGTA
TTATgttatttactttttcattttatattttcgtattttttccacttttt
atCTAAAAGAATGCAAAAGATTATTACTGTTGAAAATTATCAAGGGACAC
ATAGATTTTAGAATTTGCGAGAAGAAGTGACAATTTTGCAGAGCTTTTTC
AAcgcaaatttcacaaaatttcttcttttgtgtAAAGCAGTTATTCATTA
AATTCTTGACAGCATTGAAACAATGACTGAATACCGATTTATCCTAAGGG
TTGATACGACCATAAAAGTAACTTTGTAACTCTCATGCATCTTTCAAATT
CATTAATATTTTGATACCccaaacaaaacaacaaaacaacaaaacaatga
aacaatAATGAACAAGTAATAAGCACAGTATTAATTGTAAGAATTTCgtt
actgaaaaataaaatttaacgtTTATGAAGATTGTTGTCTTTCAAATACc
ggaattaaaaaaagaccctTGAAAAATATATCCATAGGCACTCTGTGCTA
AATAAATCgcattttatagaaaaattctaaaaattaatGTATAAACATAG
CAACCTAGTAACTTTGATAGGAAAAATTTACATTCATACTTTCCCTTAAA
GATGTATGTATTTTCTCTTATAATTCTACAGGATTGACGGAGCATAAATT
TACAGTTTTTAAGATTACTTTGGATTGGTGTGAATATAATAATGATAGAA
TATCAATTGTGGTAATAAAAATAggataaaaaacaacaacaaatatttgt
aaaatatacgATCAATCATATATATATGATTGTGTATGCATCATTGTTTT
AGTTATTTTGTTTATAATTATCATCCAATATTGTTATACAAATTATTACG
ATAATGACAAGGCTCCTATTTGCTCAGATATCAATGCATCCCTGCTAGGA
TTGATTGAATACTTTTTTAGCCTCATATCAAAGCCCAGCGAACTTCCTGA
GAGCGCATTTTTATGATACAGTGTTAACATTGCCTTACTCTTGAGGATCA
GAAGAGGTGGTTTCGTTGATTTTCCTTTCAGTTGCAAATATAAAGGTAGA
GGTGTAGAAGATACAATAAACGTACCATTCAAACTATATTCCTTGCAGAT
TTCATCCAATTGTTTTGTGAGATCACATATGATATCTAGATCATCACAAT
TTTCATTCAGGATAGATTCAACGTATTGTACAGATTGGGAAACTTTGCTG
GTTGCTGATGAAAATCTGTCCAATTTAAGCTTCTCCTTTTTGTCTGCTCT
AATTGTTGCAAGCTGTTTTACCAGTTCTTCTTCCTTCTTGGCAAGAACAA
ATCTTATTTCATTAAAAGCTTGTTTGATCATATTAGCATTGTTTTCCTCT
TCTGCAGCAATTTTTTGGTGAAATTCTTTGACTTTTCCAAGGCATTCAAC
CATTGTTAACTCACTCTCTCTCATCTTTTTGAGCTTTTGATTTAATTCTT
CTTTGGCTTTGTCGATAGCTTCCGACACCAATGTAATATCATGATTTTTA
TGTTGTGCACTTATCATACAACAATCATTACATACGACAACCTTGCATTG
CTggcaaaaatatttcaacagcTCATTATGTTTCGGATAGTAACGCTTCG
AACTAGAAATCTTCTTAGATACATTTTGTATGTCAATAATTTTATGACTT
ACAAACCTGACACATTCTTGATGGTACTTTGTGCATCTTTGACATAAATT
CAAAACACAAGTTTCGCAATGGTTTGAAGCAGGAGACTCGGCGACACAAT
CTTGACAGAAAGGGCCTTTCTTGCAGCATTTTTCACTTTGTCGATGATAT
TTTGTGCAATATAATTGGTAGATAGCTCAGATGCACCATTTGGGAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00015743-exon-sc0000216-1491911889:80219..80918 | TCONS_00015743-exon-sc0000216-1491911889:80219..80918 | Clytia hemisphaerica | exon |
| TCONS_00015743-exon-sc0000216-1510915933:80219..80918 | TCONS_00015743-exon-sc0000216-1510915933:80219..80918 | Clytia hemisphaerica | exon |
| TCONS_00015743-exon-sc0000216-1575043694:80219..80918 | TCONS_00015743-exon-sc0000216-1575043694:80219..80918 | Clytia hemisphaerica | exon |
| TCONS_00015743-exon-sc0000216-1491911889:85941..86164 | TCONS_00015743-exon-sc0000216-1491911889:85941..86164 | Clytia hemisphaerica | exon |
| TCONS_00015743-exon-sc0000216-1510915933:85941..86164 | TCONS_00015743-exon-sc0000216-1510915933:85941..86164 | Clytia hemisphaerica | exon |
| TCONS_00015743-exon-sc0000216-1575043694:85941..86164 | TCONS_00015743-exon-sc0000216-1575043694:85941..86164 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000216 | supercontig | sc0000216:80219..86164 + |
Blast
The following BLAST results are available for this feature:
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