TCONS_00015730 (transcript) - C. hemisphaerica

Overview
NameTCONS_00015730
Unique NameTCONS_00015730
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length404

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00015730 ID=TCONS_00015730|Name=TCONS_00015730|organism=Clytia hemisphaerica|type=transcript|length=404bp
acagcttttacaaaaaacaatagCCAGGGAAGATATTCATATGTAGTCCA
GACTcaccagaaaaagtttcagcctttaCTGTTTTCTCTATTAGGATTTA
GGGCTACCttttttgttgtaggttttaaggggtatccactggtatctATA
AAAGTAGTGACAAAACAAACATGTTCGTTCTCCCTACTATAAAGTACTGT
GTACAATGTAGTACTATGGTACAGTGACTTGTGCTAAATGAGACAAAACA
AAGCTAAGGCATGATCTTCAAAATCTCAAGAGGTTGGTTTGTCTCTTGAA
CATCAGACTATTAGAAAATGTTCATAATTCTGAATGTTAACCAGGCTTGT
GTGCACTGGACTTTGAGAAAGCACTAGATGGGAaatgtcagttagtcaca
ctag
Run BLAST on NCBI

transcript from alignment at sc0000215:231741..232144

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00015730 ID=TCONS_00015730|Name=TCONS_00015730|organism=Clytia hemisphaerica|type=transcript|length=404bp|location=Sequence derived from alignment at sc0000215:231741..232144 (Clytia hemisphaerica)
ctagtgtgactaactgacattTCCCATCTAGTGCTTTCTCAAAGTCCAGT
GCACACAAGCCTGGTTAACATTCAGAATTATGAACATTTTCTAATAGTCT
GATGTTCAAGAGACAAACCAACCTCTTGAGATTTTGAAGATCATGCCTTA
GCTTTGTTTTGTCTCATTTAGCACAAGTCACTGTACCATAGTACTACATT
GTACACAGTACTTTATAGTAGGGAGAACGAACATGTTTGTTTTGTCACTA
CTTTTATagataccagtggataccccttaaaacctacaacaaaaaaGGTA
GCCCTAAATCCTAATAGAGAAAACAGtaaaggctgaaactttttctggtg
AGTCTGGACTACATATGAATATCTTCCCTGGctattgttttttgtaaaag
ctgt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008784XLOC_008784Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00015730-exon-sc0000215-1491911889:231741..232144TCONS_00015730-exon-sc0000215-1491911889:231741..232144Clytia hemisphaericaexon
TCONS_00015730-exon-sc0000215-1510915933:231741..232144TCONS_00015730-exon-sc0000215-1510915933:231741..232144Clytia hemisphaericaexon
TCONS_00015730-exon-sc0000215-1575043694:231741..232144TCONS_00015730-exon-sc0000215-1575043694:231741..232144Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000215supercontigsc0000215:231741..232144 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.181937	0.177417	0	0.201537	0.98141	0	0.701727	0	0.407025	0.189905	0	1.45403	0.242001	0.251321	0.20662	0.221735	0	0.13999	0.773613	0.202383	0.527721	0.514808	0	0	0.195338	0.523003	0.249472	0.532486	0.403872	0.411482
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00015730 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top