TCONS_00015698 (transcript) - C. hemisphaerica

Overview
NameTCONS_00015698
Unique NameTCONS_00015698
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1469

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00015698 ID=TCONS_00015698|Name=TCONS_00015698|organism=Clytia hemisphaerica|type=transcript|length=1469bp
CAACGTGTTTACAAACTGACAGATTCTTTGCTTTACCAACATATTCTTCT
AATTAAGACTACCCGACTCTTTTCCTTTATtcaattttatctttttcagC
AAATAATCCCTGAGATATATGAAGGAATGTTTGTAACCAATCTGCCACCT
CACATTCTTCCCATGTTTCCATCGTGGTCACTCATCGTTCTCGGATCCTC
CAGCCTGTATAATCCCGCCAAGGGCGTTGAGCAAGTCGGATATTTCGCTG
GTTCGAATTTCTTGTTACTTTGGGATATACCAGTCGACATTACGGCGGCC
AGTGATGCATCCGATCAATTGAATCCACCTATCATCGAATCTCAGGAAGA
ACTATGGCCCGCCCCTGGTGAAGTTGTGAAACCTAAACCAGCGCCCACGC
CCGCTCAAAATGCCCTAGCCAGTCACAATACACAACTACCATTGTTTCAA
ATGATGACTAAAGTGCAGAATCAAGCAAATGAGATAATGACGAACGTGGG
CAATAAAGTCGTCGGCAAAACGAAGCGTCCAAACTCCAAAGAAACGACAT
CAGTAAAGGCCTATATCGGACATGAATATGAATGCCCTAGAGGCCACAGG
TTCTTTTGTTCTGCACCCGACAAAATGGTCAAAGCGTCTGCCTCTGGACA
TGTCCGGGAAAATGCTTCACGCTTGGTCATAGGACATATGCCTGTGTATT
TCCCATGTCCTTGTCGATCATCGAAACCATTACACTTGGCTCAACTGACA
CGTACGTATGCCGTCACACCGGACTGTCACGTCGCCATATCCGTTAACCC
GAGAGTCCAACCGGGTGACAGTGAAGTAACCCCGATTTTCTATACTGGAA
TTAAAGACGGAATCATTTTACCACCGAACAGTTTTTGCGTTATACGTTAT
CCTTATGTTTACCTAGACAATGACAACGGCCCGATTTTACCGCCGGCCCC
GTCTCAACCGTTATTAACGTGTCGTTTACTTAAAGGAATGTTCAGTTACA
CTTATGTGCCATCAACAGAGGATGCTCTGTAGAGAATTATgctggatttt
ttttggatttgataTACTTGACCGTTGGTTGGAATCATACCTATACTCTG
GTGAAGGTGTTTACTATGAAATCTGAAGCTGGCTTATTTGCGAGGTTAAA
TATTGATAGCTGTCTTGAAAGTCGTCAATGACTAACAGTTCACGTGTACC
CCGTTGAAAAGATTGATAAAGCCGATATTTTCGGTGGGGATCGGCTTAGC
CTAGAAAAGGGCATTGAGAAAAGTGTTGTGGCTCGAACGAAAGCTGCGGG
AAACAGTTTGTCGTTTCAAAAGATCTCAAAATACCGTTGGTTGACTTCGC
TattcaatcaaattttcatAAGGATCGTAAGGATACTTATTTAGACGAGG
ACTAATTTTTGTACaagctcttataaaaaatcatattttgagTACCTCGT
GTTACCTAGTAAACAGAGG
Run BLAST on NCBI

protein sequence of TCONS_00015698-protein

>TCONS_00015698-protein ID=TCONS_00015698-protein|Name=TCONS_00015698-protein|organism=Clytia hemisphaerica|type=polypeptide|length=343bp
QRVYKLTDSLLYQHILLIKTTRLFSFIQFYLFQQIIPEIYEGMFVTNLPP
HILPMFPSWSLIVLGSSSLYNPAKGVEQVGYFAGSNFLLLWDIPVDITAA
SDASDQLNPPIIESQEELWPAPGEVVKPKPAPTPAQNALASHNTQLPLFQ
MMTKVQNQANEIMTNVGNKVVGKTKRPNSKETTSVKAYIGHEYECPRGHR
FFCSAPDKMVKASASGHVRENASRLVIGHMPVYFPCPCRSSKPLHLAQLT
RTYAVTPDCHVAISVNPRVQPGDSEVTPIFYTGIKDGIILPPNSFCVIRY
PYVYLDNDNGPILPPAPSQPLLTCRLLKGMFSYTYVPSTEDAL
Run BLAST on NCBI

transcript from alignment at sc0000215:352471..354152-

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00015698 ID=TCONS_00015698|Name=TCONS_00015698|organism=Clytia hemisphaerica|type=transcript|length=1682bp|location=Sequence derived from alignment at sc0000215:352471..354152- (Clytia hemisphaerica)
CAACGTGTTTACAAACTGACAGATTCTTTGCTTTACCAACATATTCTTCT
AATTAAGACTACCCGACTCTTTTCCTTTATTCAATTTTATCTTTTTCAGC
AAATAATCCCTGAGATATATGAAGGAATGTTTGTAACCAATCTGCCACCT
CACATTCTTCCCATGTTTCCATCGTGGTCACTCATCGTTCTCGGATCCTC
CAGCCTGTATAATCCCGCCAAGGGCGTTGAGCAAGTCGGATATTTCGCTG
GTTCGAATTTCTTGTTACTTTGGGATATACCAGTCGACATTACGGCGGCC
AGTGATGCATCCGATCAATTGAATCCACCTATCATCGAATCTCAGGAAGA
ACTATGGCCCGCCCCTGGTGAAGTTGTGAAACCTAAACCAGCGCCCACGC
CCGCTCAAAATGCCCTAGCCAGTCACAATACACAACTACCATTGTTTCAA
ATGATGACTAAAGTGCAGAATCAAGCAAATGAGATAATGACGAACGTGGG
CAATAAAGTCGTCGGCAAAACGAAGCGTCCAAACTCCAAAGAAACGACAT
CAGTAAAGGCCTATATCGGACATGAATATGAATGCCCTAGAGGCCACAGG
TTCGTATAATGCACAATCTGGTTGTTTGCTCTACACGGACAGCCATTCAT
TAAATTATTTTTTAAATCAGCATTTTTCTTCTTCTGGCTCACATATACGA
ATTCATTTCTTTTGTTAAAGCCCTTTTGTGTTAAGTGGTTCACGTTTGAT
AGTATTTGTTCCTCATTAACGCAACCATAGTGTATTACAATCATCTTTTT
TTCGTGTTCTAGGTTCTTTTGTTCTGCACCCGACAAAATGGTCAAAGCGT
CTGCCTCTGGACATGTCCGGGAAAATGCTTCACGCTTGGTCATAGGACAT
ATGCCTGTGTATTTCCCATGTCCTTGTCGATCATCGAAACCATTACACTT
GGCTCAACTGACACGTACGTATGCCGTCACACCGGACTGTCACGTCGCCA
TATCCGTTAACCCGAGAGTCCAACCGGGTGACAGTGAAGTAACCCCGATT
TTCTATACTGGAATTAAAGACGGAATCATTTTACCACCGAACAGTTTTTG
CGTTATACGTTATCCTTATGTTTACCTAGACAATGACAACGGCCCGATTT
TACCGCCGGCCCCGTCTCAACCGTTATTAACGTGTCGTTTACTTAAAGGA
ATGTTCAGTTACACTTATGTGCCATCAACAGAGGATGCTCTGTAGAGAAT
TATGCTGGATTTTTTTTGGATTTGATATACTTGACCGTTGGTTGGAATCA
TACCTATACTCTGGTGAAGGTGTTTACTATGAAATCTGAAGCTGGCTTAT
TTGCGAGGTTAAATATTGATAGCTGTCTTGAAAGTCGTCAATGACTAACA
GTTCACGTGTACCCCGTTGAAAAGATTGATAAAGCCGATATTTTCGGTGG
GGATCGGCTTAGCCTAGAAAAGGGCATTGAGAAAAGTGTTGTGGCTCGAA
CGAAAGCTGCGGGAAACAGTTTGTCGTTTCAAAAGATCTCAAAATACCGT
TGGTTGACTTCGCTATTCAATCAAATTTTCATAAGGATCGTAAGGATACT
TATTTAGACGAGGACTAATTTTTGTACAAGCTCTTATAAAAAATCATATT
TTGAGTACCTCGTGTTACCTAGTAAACAGAGG

Coding sequence (CDS) from alignment at sc0000215:352471..354152-

>TCONS_00015698 ID=TCONS_00015698|Name=TCONS_00015698|organism=Clytia hemisphaerica|type=CDS|length=2064bp|location=Sequence derived from alignment at sc0000215:352471..354152- (Clytia hemisphaerica)
GTTCTTTTGTTCTGCACCCGACAAAATGGTCAAAGCGTCTGCCTCTGGAC
ATGTCCGGGAAAATGCTTCACGCTTGGTCATAGGACATATGCCTGTGTAT
TTCCCATGTCCTTGTCGATCATCGAAACCATTACACTTGGCTCAACTGAC
ACGTACGTATGCCGTCACACCGGACTGTCACGTCGCCATATCCGTTAACC
CGAGAGTCCAACCGGGTGACAGTGAAGTAACCCCGATTTTCTATACTGGA
ATTAAAGACGGAATCATTTTACCACCGAACAGTTTTTGCGTTATACGTTA
TCCTTATGTTTACCTAGACAATGACAACGGCCCGATTTTACCGCCGGCCC
CGTCTCAACCGTTATTAACGTGTCGTTTACTTAAAGGAATGTTCAGTTAC
ACTTATGTGCCATCAACAGAGGATGCTCTGTAGCAACGTGTTTACAAACT
GACAGATTCTTTGCTTTACCAACATATTCTTCTAATTAAGACTACCCGAC
TCTTTTCCTTTATTCAATTTTATCTTTTTCAGCAAATAATCCCTGAGATA
TATGAAGGAATGTTTGTAACCAATCTGCCACCTCACATTCTTCCCATGTT
TCCATCGTGGTCACTCATCGTTCTCGGATCCTCCAGCCTGTATAATCCCG
CCAAGGGCGTTGAGCAAGTCGGATATTTCGCTGGTTCGAATTTCTTGTTA
CTTTGGGATATACCAGTCGACATTACGGCGGCCAGTGATGCATCCGATCA
ATTGAATCCACCTATCATCGAATCTCAGGAAGAACTATGGCCCGCCCCTG
GTGAAGTTGTGAAACCTAAACCAGCGCCCACGCCCGCTCAAAATGCCCTA
GCCAGTCACAATACACAACTACCATTGTTTCAAATGATGACTAAAGTGCA
GAATCAAGCAAATGAGATAATGACGAACGTGGGCAATAAAGTCGTCGGCA
AAACGAAGCGTCCAAACTCCAAAGAAACGACATCAGTAAAGGCCTATATC
GGACATGAATATGAATGCCCTAGAGGCCACAGGTTCTTTTGTTCTGCACC
CGACAAAATGGTCAAAGCGTCTGCCTCTGGACATGTCCGGGAAAATGCTT
CACGCTTGGTCATAGGACATATGCCTGTGTATTTCCCATGTCCTTGTCGA
TCATCGAAACCATTACACTTGGCTCAACTGACACGTACGTATGCCGTCAC
ACCGGACTGTCACGTCGCCATATCCGTTAACCCGAGAGTCCAACCGGGTG
ACAGTGAAGTAACCCCGATTTTCTATACTGGAATTAAAGACGGAATCATT
TTACCACCGAACAGTTTTTGCGTTATACGTTATCCTTATGTTTACCTAGA
CAATGACAACGGCCCGATTTTACCGCCGGCCCCGTCTCAACCGTTATTAA
CGTGTCGTTTACTTAAAGGAATGTTCAGTTACACTTATGTGCCATCAACA
GAGGATGCTCTGTAGCAACGTGTTTACAAACTGACAGATTCTTTGCTTTA
CCAACATATTCTTCTAATTAAGACTACCCGACTCTTTTCCTTTATTCAAT
TTTATCTTTTTCAGCAAATAATCCCTGAGATATATGAAGGAATGTTTGTA
ACCAATCTGCCACCTCACATTCTTCCCATGTTTCCATCGTGGTCACTCAT
CGTTCTCGGATCCTCCAGCCTGTATAATCCCGCCAAGGGCGTTGAGCAAG
TCGGATATTTCGCTGGTTCGAATTTCTTGTTACTTTGGGATATACCAGTC
GACATTACGGCGGCCAGTGATGCATCCGATCAATTGAATCCACCTATCAT
CGAATCTCAGGAAGAACTATGGCCCGCCCCTGGTGAAGTTGTGAAACCTA
AACCAGCGCCCACGCCCGCTCAAAATGCCCTAGCCAGTCACAATACACAA
CTACCATTGTTTCAAATGATGACTAAAGTGCAGAATCAAGCAAATGAGAT
AATGACGAACGTGGGCAATAAAGTCGTCGGCAAAACGAAGCGTCCAAACT
CCAAAGAAACGACATCAGTAAAGGCCTATATCGGACATGAATATGAATGC
CCTAGAGGCCACAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008757XLOC_008757Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00015698-proteinTCONS_00015698-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00015698-exon-sc0000215-1575043694:353554..354152TCONS_00015698-exon-sc0000215-1575043694:353554..354152Clytia hemisphaericaexon
TCONS_00015698-exon-sc0000215-1575043694:352471..353340TCONS_00015698-exon-sc0000215-1575043694:352471..353340Clytia hemisphaericaexon
TCONS_00015698-exon-sc0000215-1510915933:353554..354152TCONS_00015698-exon-sc0000215-1510915933:353554..354152Clytia hemisphaericaexon
TCONS_00015698-exon-sc0000215-1510915933:352471..353340TCONS_00015698-exon-sc0000215-1510915933:352471..353340Clytia hemisphaericaexon
TCONS_00015698-exon-sc0000215-1491911889:353554..354152TCONS_00015698-exon-sc0000215-1491911889:353554..354152Clytia hemisphaericaexon
TCONS_00015698-exon-sc0000215-1491911889:352471..353340TCONS_00015698-exon-sc0000215-1491911889:352471..353340Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000215supercontigsc0000215:352471..354152 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
19.4846	17.6277	8.86284	8.17186	23.4662	18.7233	17.8105	24.0959	11.223	17.3108	14.1207	7.57596	12.1534	14.605	12.7108	18.0674	17.7553	20.7335	12.4216	10.8058	13.4485	13.1062	22.6635	22.1013	20.3454	18.8323	35.9061	40.339	49.0656	46.01
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR019354Smg8/Smg9
Vocabulary: Biological Process
TermDefinition
GO:0000184nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
Blast
[Close]
BLAST of TCONS_00015698 vs. Swiss-Prot (Human)
Match: SMG8 (Protein SMG8 OS=Homo sapiens GN=SMG8 PE=1 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 1.313e-34
Identity = 98/316 (31.01%), Postives = 148/316 (46.84%), Query Frame = 1 
Query:   52 IKTTRLFSFIQFYLFQQIIPEIYEGMFVTNLPPHILPMFPSWSLIVLGSSSLYNPAKGVEQVGYFAGSNFLLLWDIPVDITAASDASDQLNPPIIESQEELWPAPGEVVKPKPAPTPAQNALASHNTQLPLFQMMTKVQNQANEIMTNVGNKVVGKTKRPNSKETTSVKAYIGHEYECPRGHRFFCSAPDKMVKASASGHVRENASRLVIGHMPVYF--PCPCRSSKPLHLAQLTRTYAVTPDCHVAISVNPRVQPGDSEVTPIFYTGIKDGIILPPNSFCVIRYPYVYLDNDNGPILPPAPSQPLLTCRLLKGMF 993
            +KT +  +F+     Q    E   GM  +N P  +LP F SWSL+ LG +  YN   G++Q G+  G+N+L+ WDI +   A  +     N          WPAP + +  K +                                      V+G+ +R +       +A++G EYE  RG RF CS PDK++K   SG  +E+A + +   MP+Y       R  KP H AQL R + V PD  + I + P+VQPG     P+FY   K  I LPP+   V+R+PY Y+  + GP  PP  +  L++ ++L+G+ 
Sbjct:  728 VKTEKRPNFVDR---QASTVEYLPGMLHSNCPKGLLPKFSSWSLVKLGPAKSYNFHTGLDQQGFIPGTNYLMPWDIVIRTRAEDEGDLDTNS---------WPAPNKAIPGKRSAV------------------------------------VMGRGRRRDD----IARAFVGFEYEDSRGRRFMCSGPDKVMKVMGSG-PKESALKALNSDMPLYILSSSQGRGLKP-HYAQLMRLFVVVPDAPLQIILMPQVQPGPPPC-PVFYPE-KQEITLPPDGLWVLRFPYAYV-TERGPCFPPKENVQLMSYKVLRGVL 986
The following BLAST results are available for this feature:
BLAST of TCONS_00015698 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SMG81.313e-3431.01Protein SMG8 OS=Homo sapiens GN=SMG8 PE=1 SV=1[more]
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