TCONS_00015698-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00015698-protein
Unique NameTCONS_00015698-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length343

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00015698-protein ID=TCONS_00015698-protein|Name=TCONS_00015698-protein|organism=Clytia hemisphaerica|type=polypeptide|length=343bp
QRVYKLTDSLLYQHILLIKTTRLFSFIQFYLFQQIIPEIYEGMFVTNLPP
HILPMFPSWSLIVLGSSSLYNPAKGVEQVGYFAGSNFLLLWDIPVDITAA
SDASDQLNPPIIESQEELWPAPGEVVKPKPAPTPAQNALASHNTQLPLFQ
MMTKVQNQANEIMTNVGNKVVGKTKRPNSKETTSVKAYIGHEYECPRGHR
FFCSAPDKMVKASASGHVRENASRLVIGHMPVYFPCPCRSSKPLHLAQLT
RTYAVTPDCHVAISVNPRVQPGDSEVTPIFYTGIKDGIILPPNSFCVIRY
PYVYLDNDNGPILPPAPSQPLLTCRLLKGMFSYTYVPSTEDAL
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_008757XLOC_008757Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00015698TCONS_00015698Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR019354Smg8/Smg9
Vocabulary: Biological Process
TermDefinition
GO:0000184nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR019354Smg8/Smg9PFAMPF10220Smg8_Smg9coord: 38..330
e-value: 1.5E-71
score: 241.9

Blast
[Close]
BLAST of TCONS_00015698-protein vs. Swiss-Prot (Human)
Match: SMG8 (Protein SMG8 OS=Homo sapiens GN=SMG8 PE=1 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 2.970e-36
Identity = 98/316 (31.01%), Postives = 148/316 (46.84%), Query Frame = 0 
Query:   18 IKTTRLFSFIQFYLFQQIIPEIYEGMFVTNLPPHILPMFPSWSLIVLGSSSLYNPAKGVEQVGYFAGSNFLLLWDIPVDITAASDASDQLNPPIIESQEELWPAPGEVVKPKPAPTPAQNALASHNTQLPLFQMMTKVQNQANEIMTNVGNKVVGKTKRPNSKETTSVKAYIGHEYECPRGHRFFCSAPDKMVKASASGHVRENASRLVIGHMPVYF--PCPCRSSKPLHLAQLTRTYAVTPDCHVAISVNPRVQPGDSEVTPIFYTGIKDGIILPPNSFCVIRYPYVYLDNDNGPILPPAPSQPLLTCRLLKGMF 331
            +KT +  +F+     Q    E   GM  +N P  +LP F SWSL+ LG +  YN   G++Q G+  G+N+L+ WDI +   A  +     N          WPAP + +  K +                                      V+G+ +R +       +A++G EYE  RG RF CS PDK++K   SG  +E+A + +   MP+Y       R  KP H AQL R + V PD  + I + P+VQPG     P+FY   K  I LPP+   V+R+PY Y+  + GP  PP  +  L++ ++L+G+ 
Sbjct:  728 VKTEKRPNFVDR---QASTVEYLPGMLHSNCPKGLLPKFSSWSLVKLGPAKSYNFHTGLDQQGFIPGTNYLMPWDIVIRTRAEDEGDLDTNS---------WPAPNKAIPGKRSAV------------------------------------VMGRGRRRDD----IARAFVGFEYEDSRGRRFMCSGPDKVMKVMGSG-PKESALKALNSDMPLYILSSSQGRGLKP-HYAQLMRLFVVVPDAPLQIILMPQVQPGPPPC-PVFYPE-KQEITLPPDGLWVLRFPYAYV-TERGPCFPPKENVQLMSYKVLRGVL 986
The following BLAST results are available for this feature:
BLAST of TCONS_00015698-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SMG82.970e-3631.01Protein SMG8 OS=Homo sapiens GN=SMG8 PE=1 SV=1[more]
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