TCONS_00015623 (transcript) - C. hemisphaerica

Overview
NameTCONS_00015623
Unique NameTCONS_00015623
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length883

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00015623 ID=TCONS_00015623|Name=TCONS_00015623|organism=Clytia hemisphaerica|type=transcript|length=883bp
ACAACCACTGCACCGCCAACCCACCCACCCACAACCACTGcaccaaaaac
cactcaaaaatCGTCAACCGTACCCACGACAACCAATCCGACATCCTCGA
GTAacccaGAGCCGTGCAAGAGACTTGGTTTGGAATGTGTTGTCTGTTCA
CAATGCGGTGAAAATGGATTTTGTATCACCAATCTGGATTTACGAGNTGC
AAGCGACTTGGTTTGGAATGTGTTGTCTGTTCACAATGCGGTGAAAATGG
ATTTTGTATCACCAATCTCGATTTACGAAATTCCAACATGGTTTGTTTAT
GTCGATATGGTTTCACTGGAAGTCAAGCTAAATTTGTTCCTCAACGTTTG
GAAACAAGTGCTTTTACCAAAAATCGAATAAGAGCTGACTCTTGTGACCT
CAAGTGCAATTATTCACCTCATAACAGAAACGAACAATGTGTCAACAGTG
CTTTGCCTTCCGTCATTCCCACGACAACGATTACATCATCAACAACGACG
TCGACAACAACGGCCCAACCCTCGTCACCAGTCCCTCAAACCACACAAGC
GACGCCGACAACCGCCAAGATACAAACTGTCACTTACaACCCAAACAACC
CTCCCGAATGTAGAGTGTCCGGATTAAATTGCATCCGGTGTGATCAATGC
GGGCAGTCCGGATATTGTGTTACGAATGATGGATCGGAACTAAAGTGTTT
GTGCCAATACGGGTTTACCGGTGTGGATGGTGGCCAGTATATCGGAGAAC
ATCCGGTTAACAcattctttttgtttacaaagaATCGGATTCGAGCGAAA
GACTGTCTCAGACAATGTCATTACAGCCCGTTCCGCAGGAACACCCATTG
TGCTAAAGAGTCACCCAGCTATGTGGAAACGNA
Run BLAST on NCBI

transcript from alignment at sc0000214:390347..393981+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00015623 ID=TCONS_00015623|Name=TCONS_00015623|organism=Clytia hemisphaerica|type=transcript|length=3635bp|location=Sequence derived from alignment at sc0000214:390347..393981+ (Clytia hemisphaerica)
ACAACCACTGCACCGCCAACCCACCCACCCACAACCACTGcaccaaaaac
cactcaaaaatCGTCAACCGTACCCACGACAACCAATCCGACATCCTCGA
GTAgtaagtcaatttttttggtcaTCATATTCATCGAGTTCACATGGAAT
AGCTAAAGGGAATAATTGTTGATAAAGTTGGGAATTGGCCttaaattaaa
catttttgCCACTTTCCTAAATAAATTCTCGCAACATTCCATTCACTTTT
GTTCATTTCTTCATTCTTCTTAAAATGCTCTTTTGCGTATAATTCTTATG
ATATTCAAGAAGAAAATGACAGAtcaaattacaaaattttctcccgctaa
attcaaaaatattcttgaaGCGCCCAAATAAATCCTGGAAAATTAAATGA
GCAATCATTCGCCAAAATCTCTTTCTTGAAATCACACATTGAACAgcaga
aaatctttttgattaagtttgattttAAGGAGGGCAGTAATTTTCGATAG
GCTGAATCAAATTAGGTCTTTTAAAACAATGCTTGTAACAATTTAAAGAT
GTCAAAAACCGCGGgctttgatttttgggaaaaataatCAATATCAAATA
TCGaagtgaaaatatcaaaatcatctGTCAGAATTAGCTCGTGATTTTTC
TCCTGTATTTCCCCAGAGTCGAACAAGCggccttttttctttttcgtttt
ttgtgtatgtaatttttcgtatattttacagacccaGAGCCGTGCAAGAG
ACTTGGTTTGGAATGTGTTGTCTGTTCACAATGCGGTGAAAATGGATTTT
GTATCACCAATCTGGATTTACGAGNTGCAAGCGACTTGGTTTGGAATGTG
TTGTCTGTTCACAATGCGGTGAAAATGGATTTTGTATCACCAATCTCGAT
TTACGAAATTCCAACATGGTTTGTTTATGTCGATATGGTTTCACTGGAAG
TCAAGCTAAATTTGTTCCTCAACGTTTGGAAACAAGTGCTTTTACCAAAA
ATCGAATAAGAGCTGACTCTTGTGACCTCAAGTGCAATTATTCACCTCAT
AACAGGTATCTAACCTCTTCCATTGGTTCGCTTGACTGCGTTAAacgttt
ttttcatgaaaaaaactatataagaacataaggcttcgatggccaaaatg
ttaaaaataagttaagaacatttttaggcttgaaactcacaaagttaaga
acatctgtagggtaggcttcaaaaattttagatgttctaataaaagaaac
gTGTACTTTATCACACACAATAAGATCTGCCATGTTTGAGTTGTTTTTAA
ATTGGTACCTGCAAAAAGCTATTGTAgtgctaaaactttggggctaAAAC
GGGGCTACATCACTTGTGTTCAAGCGAAGCGCTCTCGatgtgtttttcaa
aaaaactcattcAATTTAACACTTTTTCAATACGAAGCTTTGCCAAGATC
AACATCATGGAAACTGGATTGAAttgatgtttcaatttttttttctgata
tttttcacTTGTAGAAACGAACAATGTGTCAACAGTGCTTTGCCTTCCGT
CATTCCCACGACAACGATTACATCATCAACAACGACGTCGACAACAACGG
CCCAACCCTCGTCACCAGTCCCTCAAACCACACAAGCGACGCCGACAACC
GCCAAGATACAAACTGTCACTTACagtaaagttttgattttcttttaggG
GATAATTAGGTGGTTTCAAATTCTAGAATTAGAAACCCGTAGGGGAGAGG
GGTGCTAGAGTTGGCTGATGAGGGATATGCACGGACGGGActtccgaaaa
ccgacccttagagaaacCAAATTTAATGTGAAAAATGCCCCTTAGATAGT
CTACGATTTTTGTAAATgtcttttttacaattttttacaatttttgaaga
tttcctataaatcgtgaattttccgatTCTTTGAGGGACTACATTGAAAT
TCTCCGCCGATTTCTGTAGCCCTTAGGGAGACTTTGGTAGGTGAAAAAAG
CGACCCTTATTATTGTCCACACATATCCAGAACCCAGTACCCTCACCCGG
TTAGAAACCCTTTGTTGTGTGAGTGAAACCTCTAAATATTTTGGTCTAAC
GTCTTTCTGAAGTTGAGATATGACAGAAATCTCTAAAAATCTCTTGATAC
TTGAATATCTCGActtaaaaaaaagacaaaaatatttagaaGTTTTTCCC
AGGACCTCGAAAATAACCGACAGGCTAAagatctcaaaccatctgattat
ccctttaacttttttttcacatacacgtaatattttcttacacAAAAAGC
TTCGCGAAAAAACGTTCTGACCattcacattttttacaattttcatcatG
AGGTAATCACAAATTCTGAAAgaattcagaaattttgactGATTGTTAAA
AGAATGCATTTTAGTATCTTAatcaagggaagaaattttggtggatcTGG
AGAATTACCTCGAAAATTCGCCAAAAGAAATTTCCGCCATATTCAGATTT
ACAGGCCATTTggcaaaattaattctcgcaaaattaaaaaattttattaa
gtcgccaaaataaattctgccaaattgcaccaaaattggtGAATGggctc
attcgccaaaatttcttctcttaaggtattcTATTTTTTTCAGCTTTCTT
ATCAAAAAGTGTATTTTACTTTCAGACCCAAACAACCCTCCCGAATGTAG
AGTGTCCGGATTAAATTGCATCCGGTGTGATCAATGCGGGCAGTCCGGAT
ATTGTGTTACGAATGATGGATCGGAACTAAAGTGTTTGTGCCAATACGGG
TTTACCGGTGTGGATGGTGGCCAGTATATCGGAGAACATCCGGTTAACAc
attctttttgtttacaaagaATCGGATTCGAGCGAAAGACTGTCTCAGAC
AATGTCATTACAGCCCGTTCCGCAGGTACCATAAACTCTCGATAACCATT
CTAACTCAAAATTTCTTAGCTCGAACAATTCTGGCTGCAACTTTCTAAAC
TCGAAGAATTCTGACTGCAACTTTATAACTTGAACCACCGTAACTCGATT
TTTCTTAGCTTAGACCATTGTAACTCCAACTTTCTTAGCTTGAACCATTC
TAACTGCAACTTTCTAAACTCGAACAATTCTGACTGCAACTTTATAACTC
GAACCATCGTAACTCGATTTTTCTTAGCTTAGACCATTGTAACTCCAACT
TTCTTTATAGCTCGAATTTTTCTAACTTGAACATCTCCTATAACCTTAGA
CTAGAGTCTAATTctgattgatttttaatttctgTTAGTATTAACGGTGA
GACATTGAGTGAAGCGGGCTGGCTAGAGGATTCCACTACCTAAATATATT
TCACTTtcatttcgaaaaattgtacaaaaataccaaaacaacataaaaat
aaaataaaatacataGAAGTACCTACCAAATGTTAAAAAAGAATAGCACG
CTTAGCCTGCAGATAATGTTCGAGTCTAGTCAAAGAATATAAACGATTAT
CTCCCCTTTCGGAAATACGCAACCGTGGGTTTCTAAAGTTATCTTACAAA
TAGAAGATAGGGTTGCTTTAAACATCAATATTTTTTCAAGGAACACCCAT
TGTGCTAAAGAGTCACCCAGCTATGTGGAAACGNA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008718XLOC_008718Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00015623-exon-sc0000214-1491911889:390347..390449TCONS_00015623-exon-sc0000214-1491911889:390347..390449Clytia hemisphaericaexon
TCONS_00015623-exon-sc0000214-1510915933:390347..390449TCONS_00015623-exon-sc0000214-1510915933:390347..390449Clytia hemisphaericaexon
TCONS_00015623-exon-sc0000214-1575043694:390347..390449TCONS_00015623-exon-sc0000214-1575043694:390347..390449Clytia hemisphaericaexon
TCONS_00015623-exon-sc0000214-1491911889:391078..391401TCONS_00015623-exon-sc0000214-1491911889:391078..391401Clytia hemisphaericaexon
TCONS_00015623-exon-sc0000214-1510915933:391078..391401TCONS_00015623-exon-sc0000214-1510915933:391078..391401Clytia hemisphaericaexon
TCONS_00015623-exon-sc0000214-1575043694:391078..391401TCONS_00015623-exon-sc0000214-1575043694:391078..391401Clytia hemisphaericaexon
TCONS_00015623-exon-sc0000214-1491911889:391861..392021TCONS_00015623-exon-sc0000214-1491911889:391861..392021Clytia hemisphaericaexon
TCONS_00015623-exon-sc0000214-1510915933:391861..392021TCONS_00015623-exon-sc0000214-1510915933:391861..392021Clytia hemisphaericaexon
TCONS_00015623-exon-sc0000214-1575043694:391861..392021TCONS_00015623-exon-sc0000214-1575043694:391861..392021Clytia hemisphaericaexon
TCONS_00015623-exon-sc0000214-1491911889:393022..393271TCONS_00015623-exon-sc0000214-1491911889:393022..393271Clytia hemisphaericaexon
TCONS_00015623-exon-sc0000214-1510915933:393022..393271TCONS_00015623-exon-sc0000214-1510915933:393022..393271Clytia hemisphaericaexon
TCONS_00015623-exon-sc0000214-1575043694:393022..393271TCONS_00015623-exon-sc0000214-1575043694:393022..393271Clytia hemisphaericaexon
TCONS_00015623-exon-sc0000214-1491911889:393937..393981TCONS_00015623-exon-sc0000214-1491911889:393937..393981Clytia hemisphaericaexon
TCONS_00015623-exon-sc0000214-1510915933:393937..393981TCONS_00015623-exon-sc0000214-1510915933:393937..393981Clytia hemisphaericaexon
TCONS_00015623-exon-sc0000214-1575043694:393937..393981TCONS_00015623-exon-sc0000214-1575043694:393937..393981Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000214supercontigsc0000214:390347..393981 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.266161	0.548388	0.0654145	0	1.84456	1.38284	1.60302	1.6313	0.454967	0.461575	0.442535	0.537305	1.47902	2.41204	0.836249	0.737011	1.48838	1.37275	1.3155	0.95734	0.609535	0.992926	0.791687	0.715365	1.89113	1.28288	0.699759	0.58964	0.995025	0.650375
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00015623 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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