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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00015611 ID=TCONS_00015611|Name=TCONS_00015611|organism=Clytia hemisphaerica|type=transcript|length=768bp
ttagattttctttcgATGGTTTTTTGTTCGTTTCGTCGACGCCTTCCATC
AAACTTTTCCAAATTTCAACAACAACACGCATGAGAAGTCATATCCGTCA
TAATGACGCCGTTTACGCCGTTACTACGTTGCTCGAATACTTCAACAACA
ACACGCATGAGAATAACTCGCATCCGTCAATCCGTCACGTTGACGCTGTT
ACGTTCTTACGTTGCTCAAATCTACATATTCCCTTCACCTTTTTCAGCgt
ttttatgTATAACAGCACGTTACTGTATCTATGTAGAACCGTTTTGGTAC
TACCACGTCTACGTTTACGTCTTATGGTTATCTTTGCGCTTTACGTGAat
acagaagaaaaaaatggtGCAAAGCTGTTCGAAAATTATAACTTTTCTAG
CTTATTGATAATGAAGTAACTGATATCCTCCTAAGTCTCATACAGTTGAC
AAATCTAAAGGCCAAATTGTGTTAAAGGCCACATAATTTTGATAAAGGAA
TATTAtcgaaaattaaattttattcaGACTCAAATTAATAACAGTTTAGT
cagatgtttttttatttggaaatcaatattttttgctaATGTTGACGAAA
CAGTATTCAAAATTATGCCCAGTTTTTGTATTAGAGCTCGCCTCAACTTT
CAAATGTTTAGCAATAAAAGGGtttctatgaatttgggcgtgGCAATTAA
GGAAAGCAACGTATATAAATTTTCAGAGCGCCAAAGTTTTTTATGTAGAT
GTAAATATATTATATAGC Run BLAST on NCBI transcript from alignment at sc0000214:253211..256737+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00015611 ID=TCONS_00015611|Name=TCONS_00015611|organism=Clytia hemisphaerica|type=transcript|length=3527bp|location=Sequence derived from alignment at sc0000214:253211..256737+ (Clytia hemisphaerica)
ttagattttctttcgATGGTTTTTTGTTCGTTTCGTCGACGCCTTCCATC
AAACTTTTCCAAGTAAgtccattgtttttttttcagaaaccAAATGAGTT
GTTTCTTGATAAACGGttatagtttttttttgattgaatgacTTCATTTT
AAAAAGCTTCAAAGTAGATTTCTGTTTGGATgtaaacccggggggggggg
cagtcaggcaaattgaccgacgggtatgtgcggcggttaagggtatgttt
ttcaaaatatcagaaatgcactgtaagggtggacttttgataaatgcact
gtaagggtggaaatttcagcaaatctgggaaaaattgcaaatttttttga
ttttttttgctctaaaagaatttaaaattagaaaaaatgcaCAGTAAGGG
TATGAaattcaccgatttttttctgcactgtaagggtgcgattctaaaag
ccatttttttcgccgcacataccgtcagttggtaaacccactgccccccc
cccgggatgtAAAACAGACATTTAGTACCCATTTTAAATGTGAAATTTAC
TTGACTTGAAaatgtttatttgttttttttataaaagcaaaatggttcga
atttgaaaaaaaaagaatatagcgccacaaatttaatttttccttttttg
atacATATAAAATGGCTTCTCTATGTTCTATggaaagaaagtttaaaaac
gtcaattttcattgattttttgtACGTATTCTAcaaacccctgtctcaca
ggcTTTTTCtcaatacactcttttttttataagaatacactttataagaa
tgtccatgatgaaaatcgcccccggggggggcagccaagcaaaatgactg
acgggtatgtgcgggcactaagggtgtatttttcaagacatccgaaatgc
actgtaagggtgggttTTTTGCCGCCTGcgctgtaagggtagaaatttca
gaaaatttttgaaaaatctagatattttgaccaaaaNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNgttttcactgatttttgc
tgcactgtaagggtgcaattttaaaagccaatttttggcccgcacatacc
gtcagtccgcaaacccagtgccccccccgggaaatcgccaaaaaactaag
aatatgctaagaatatcaccatcatggaattatgctaataaagctaagaa
tgccatttttagagcattttcaattataaactgtcaattatccccaagta
aggctcactccttttacaaaaatgccattttatgcttgagacgtatgtac
taaatgttaaatctagtatgaattaggatcctaacctaagaatgttgtaa
gaatattttaggatgattttcccaaaaaaagttaagaatatctatgatga
aatgaaaaaacaccattcttataaaaaaacgtttatctaACAACAAAGAC
CATTTGAGAGAGAAAAAATTGgtgtttttgggacccttagaaagactttt
cccaaaaaatttgtCGATTTTTACTCCATTTTGTCCAAGTTTTTTAAAAT
CGTGACCCTTTTAGAGAGGAAATTTCTATTtgactcaatttgctttttaa
tgctttttgtACCCGGCACCCTTTTTGCCTAAATACCCCCACCCCGTATT
TCACTTTATTtaattcattgttttaaatcatGATTTCGAATCATGGCGCC
ATTATTTTAAATCgcttttttcttttagaaggacatttaaaaaaaaaatg
ttttgttgtgatgttattcaagtttttcattcaaaacacAACCAATGATA
TCGAGCCCAACAAACTTTATCTCCAATTTGTATTCTTTCAATGTCCTTTC
TAGATTTCAACAACAACACGCATGAGAAGTCATATCCGTCATAATGACGC
CGTTTACGCCGTTACTACGTTGCTCGAATGTACGTATTCCCGTTACGTTT
AACTACCGTCAAACTCTAACTTTTTCCAATGTGAGTGGATTATCACAATT
TAAGCTCTGATAGATCTGGTTGGTATTTCCTTCCGTTCTGGCGATATTTC
GGCACATTTCAATACATATTGTCACTTTTTAAGGTATTGATTTTGAGTCC
TACAAACTTTATCTCCAATTTGTATTCTTTCAATGGTTTTTCTAGACTTC
AACAACAACACGCATGAGAATAACTCGCATCCGTCAATCCGTCACGTTGA
CGCTGTTACGTTCTTACGTTGCTCAAATCTACATATTCCCTTCACCTTTT
TCAGCGTAAGTCGAATATTACTGTTGTGGAAATCTTTCttaatctttctt
ttttaaggaagacacccccttctcacagacccggtgggattttccAAAGT
AGCAGACCAAATATCGATGGAGGTTCATATTCCCGTGCTTTTTTATGgtt
ggggatttgaattccattgtttccGAGCCAGAAAATTTAGCGAGAATATA
AAAAGTAGCACAAAATTTTGTAGTGAGGATTAGCTTATCTGATTTTCTTC
attggggacaaaaattagactATGATTTTCCACtgaggacgatattttgg
ccgatttttccagtgggaagggttctcAGTGGCTAtgcgagaagggggtg
tgaaGGGTGGAAAGCCCTCGTCACATCCATACTGAGCTAGAAATACAGAA
GTTCTGACAGACCAAACTGTAATTCTGTTCTGGTGATATTTCGGCCAAAT
CTCACTGCTGTTACtatttttaaggcatttttttGTGTCCTTGTGAACTT
ATTCATTTTGACTGAAAACCTTTCAACTCTTTATCATCTTACTGTctatt
ttttcaggtttttatgTATAACAGCACGTTACTGTATCTATGTAGAACCG
TTTTGGTACTACCACGTCTACGTTTACGTCTTATGGTTATCTTTGCGCTT
TACGTGAatacagaagaaaaaaatggtGCAAAGCTGTTCGAAAATTATAA
CTTTTCTAGCTTATTGATAATGAAGTAACTGATATCCTCCTAAGTCTCAT
ACAGTTGACAAATCTAAAGGCCAAATTGTGTTAAAGGCCACATAATTTTG
ATAAAGGAATATTAtcgaaaattaaattttattcaGACTCAAATTAATAA
CAGTTTAGTcagatgtttttttatttggaaatcaatattttttgctaATG
TTGACGAAACAGTATTCAAAATTATGCCCAGTTTTTGTATTAGAGCTCGC
CTCAACTTTCAAATGTTTAGCAATAAAAGGGtttctatgaatttgggcgt
gGCAATTAAGGAAAGCAACGTATATAAATTTTCAGAGCGCCAAAGTTTTT
TATGTAGATGTAAATATATTATATAGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00015611-exon-sc0000214-1491911889:253211..253272 | TCONS_00015611-exon-sc0000214-1491911889:253211..253272 | Clytia hemisphaerica | exon |
| TCONS_00015611-exon-sc0000214-1510915933:253211..253272 | TCONS_00015611-exon-sc0000214-1510915933:253211..253272 | Clytia hemisphaerica | exon |
| TCONS_00015611-exon-sc0000214-1575043694:253211..253272 | TCONS_00015611-exon-sc0000214-1575043694:253211..253272 | Clytia hemisphaerica | exon |
| TCONS_00015611-exon-sc0000214-1491911889:255264..255339 | TCONS_00015611-exon-sc0000214-1491911889:255264..255339 | Clytia hemisphaerica | exon |
| TCONS_00015611-exon-sc0000214-1510915933:255264..255339 | TCONS_00015611-exon-sc0000214-1510915933:255264..255339 | Clytia hemisphaerica | exon |
| TCONS_00015611-exon-sc0000214-1575043694:255264..255339 | TCONS_00015611-exon-sc0000214-1575043694:255264..255339 | Clytia hemisphaerica | exon |
| TCONS_00015611-exon-sc0000214-1491911889:255556..255665 | TCONS_00015611-exon-sc0000214-1491911889:255556..255665 | Clytia hemisphaerica | exon |
| TCONS_00015611-exon-sc0000214-1510915933:255556..255665 | TCONS_00015611-exon-sc0000214-1510915933:255556..255665 | Clytia hemisphaerica | exon |
| TCONS_00015611-exon-sc0000214-1575043694:255556..255665 | TCONS_00015611-exon-sc0000214-1575043694:255556..255665 | Clytia hemisphaerica | exon |
| TCONS_00015611-exon-sc0000214-1491911889:256218..256737 | TCONS_00015611-exon-sc0000214-1491911889:256218..256737 | Clytia hemisphaerica | exon |
| TCONS_00015611-exon-sc0000214-1510915933:256218..256737 | TCONS_00015611-exon-sc0000214-1510915933:256218..256737 | Clytia hemisphaerica | exon |
| TCONS_00015611-exon-sc0000214-1575043694:256218..256737 | TCONS_00015611-exon-sc0000214-1575043694:256218..256737 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000214 | supercontig | sc0000214:253211..256737 + |
Blast
The following BLAST results are available for this feature:
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