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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00015558 ID=TCONS_00015558|Name=TCONS_00015558|organism=Clytia hemisphaerica|type=transcript|length=1712bp
CAActattgttgttttgtttttaggaaaaagaaatgaaaaaagtaaaatt
aagaTAAATAATTAAGAGAACCAATGGTTTTATTGTCAACTTTGAGACGT
TTCACAAAAAGTATCGTCGAAACTTCAACAAAATACTATGGTATTGTGTA
CAAGAAAAACCTTTTCCTGTCAAATTCTTTGATTGGTGTTTCTTTATTCA
CAATTGGTGATATTTTCGAGCAGAAATGTATCGAGAAACGACCCACAATC
GATTTTAAGAGAACCTCGTGTATGGCTGCTTGGGGTCTTATGTATGGTGT
GACAGCTCATCTTTGGTATGGTTTTATGGCTCGTAATGCTATCCTACAAA
GACGTTTCCACACTCAAATATTGATTTACATGTTATGTTTTTCACCTGTA
GAGACCGTTACATTTTATTACTTTACTGGCTATTTGGAAGGGCAAACCAC
AGCAGAAACGAGAGAAGAAGTCTCTAAGAAGTTTCTACCGACTTATTTAA
CAGATTCTACTGTGTACTACCCTTTCATGTATTGTGTTGTACGCTTTGTT
CCGCTGCACTTGCGTACAACTGCTGATTTGTTGTATGGGCTTTTGTATGG
TGTCTTTTTGTCGTATATGAAACATCATAATATTCATATTCCTTTGTTAA
CTCTTTTCGACAGTGatcaaaatgtttaaaatttattgAGTTGAAATTTG
TTACATTTATCGTGTTCAATAATGTAGAACTCACTTCAGATAAGCTTCTG
TGCCAAGATAGGTTTCAAGGAGTTTCTAGAGATTCTACTAGGCTTAGCTC
TAAATCAGACTGTGAATGCTTTGCGAAAAATCCTTTTTCAACAGAAAAGC
TTTTTGTGGTTTCacatttttgaggcttttttaaacgGAGTagcttaacc
ctttaagtgccaatgacGAGTATGGTCATGaactatgtaggagggcgaag
ccctcctctAATGCCCAGTTTGAATTAGAAGTCGTCacttttggtctaac
tcgtagaaattggattgggcttcatggtaaagccaaaaaaaaatcaaaag
tgagtcttttcagtgagattttaagctaaaaagtcaaaaaaatgcaaaac
tttgacaaaaatccactttttaagatttttaccgttttttgaccaatttt
ggtcaacgagtgatccaagaacctccaaatttggccctgctttacttgat
tttGTCTATcagcgaattagtttgaagtttgGGCACccttctatcattca
ggcaggtctgCGCAGCGCCTTCGGCCGTAGCCCACCctgcccttcctaaa
tcgggcggcgccgaaggtgCCTAAAAGAAtaaggagactctaagctatcc
aacgagctatgaacaagcttccaactccttctagatccggagatataagc
ctttaaagtttgaactagcgattttcttttaaaaacttttaaaaaatgag
CGTGGCACTTAAAGAGTTAAACCAAAACACGTTTTAACTCCAAATATTAG
TCTTGATTTTTGTACTTGCCTTGGACACGTTAacaatttttattataaga
atagCTTAATCAAATTTCTAGAATACATTTAAAACCTAGTTTTATATTTC
TGTAATATATTTTTACCAAAGATTTTATACTAAATTTACTATTTTATGGA
TTGTTCAATATTATTATACCTTTAttatcaaaattgatttttaaaatttc
ttaagaaaaaac Run BLAST on NCBI protein sequence of TCONS_00015558-protein >TCONS_00015558-protein ID=TCONS_00015558-protein|Name=TCONS_00015558-protein|organism=Clytia hemisphaerica|type=polypeptide|length=201bp
MVLLSTLRRFTKSIVETSTKYYGIVYKKNLFLSNSLIGVSLFTIGDIFEQ
KCIEKRPTIDFKRTSCMAAWGLMYGVTAHLWYGFMARNAILQRRFHTQIL
IYMLCFSPVETVTFYYFTGYLEGQTTAETREEVSKKFLPTYLTDSTVYYP
FMYCVVRFVPLHLRTTADLLYGLLYGVFLSYMKHHNIHIPLLTLFDSDQN
V Run BLAST on NCBI transcript from alignment at sc0000212:32810..34521 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00015558 ID=TCONS_00015558|Name=TCONS_00015558|organism=Clytia hemisphaerica|type=transcript|length=1712bp|location=Sequence derived from alignment at sc0000212:32810..34521 (Clytia hemisphaerica)
gttttttcttaagaaattttaaaaatcaattttgataaTAAAGGTATAAT
AATATTGAACAATCCATAAAATAGTAAATTTAGTATAAAATCTTTGGTAA
AAATATATTACAGAAATATAAAACTAGGTTTTAAATGTATTCTAGAAATT
TGATTAAGctattcttataataaaaattgtTAACGTGTCCAAGGCAAGTA
CAAAAATCAAGACTAATATTTGGAGTTAAAACGTGTTTTGGTTTAACTCT
TTAAGTGCCACGctcattttttaaaagtttttaaaagaaaatcgctagtt
caaactttaaaggcttatatctccggatctagaaggagttggaagcttgt
tcatagctcgttggatagcttagagtctccttaTTCTTTTAGGcaccttc
ggcgccgcccgatttaggaagggcagGGTGGGCTACGGCCGAAGGCGCTG
CGcagacctgcctgaatgatagaaggGTGCCcaaacttcaaactaattcg
ctgATAGACaaaatcaagtaaagcagggccaaatttggaggttcttggat
cactcgttgaccaaaattggtcaaaaaacggtaaaaatcttaaaaagtgg
atttttgtcaaagttttgcatttttttgactttttagcttaaaatctcac
tgaaaagactcacttttgatttttttttggctttaccatgaagcccaatc
caatttctacgagttagaccaaaagtGACGACTTCTAATTCAAACTGGGC
ATTagaggagggcttcgccctcctacatagttCATGACCATACTCgtcat
tggcacttaaagggttaagctACTCcgtttaaaaaagcctcaaaaatgtG
AAACCACAAAAAGCTTTTCTGTTGAAAAAGGATTTTTCGCAAAGCATTCA
CAGTCTGATTTAGAGCTAAGCCTAGTAGAATCTCTAGAAACTCCTTGAAA
CCTATCTTGGCACAGAAGCTTATCTGAAGTGAGTTCTACATTATTGAACA
CGATAAATGTAACAAATTTCAACTcaataaattttaaacattttgatCAC
TGTCGAAAAGAGTTAACAAAGGAATATGAATATTATGATGTTTCATATAC
GACAAAAAGACACCATACAAAAGCCCATACAACAAATCAGCAGTTGTACG
CAAGTGCAGCGGAACAAAGCGTACAACACAATACATGAAAGGGTAGTACA
CAGTAGAATCTGTTAAATAAGTCGGTAGAAACTTCTTAGAGACTTCTTCT
CTCGTTTCTGCTGTGGTTTGCCCTTCCAAATAGCCAGTAAAGTAATAAAA
TGTAACGGTCTCTACAGGTGAAAAACATAACATGTAAATCAATATTTGAG
TGTGGAAACGTCTTTGTAGGATAGCATTACGAGCCATAAAACCATACCAA
AGATGAGCTGTCACACCATACATAAGACCCCAAGCAGCCATACACGAGGT
TCTCTTAAAATCGATTGTGGGTCGTTTCTCGATACATTTCTGCTCGAAAA
TATCACCAATTGTGAATAAAGAAACACCAATCAAAGAATTTGACAGGAAA
AGGTTTTTCTTGTACACAATACCATAGTATTTTGTTGAAGTTTCGACGAT
ACTTTTTGTGAAACGTCTCAAAGTTGACAATAAAACCATTGGTTCTCTTA
ATTATTTAtcttaattttacttttttcatttctttttcctaaaaacaaaa
caacaatagTTG Coding sequence (CDS) from alignment at sc0000212:32810..34521 >TCONS_00015558 ID=TCONS_00015558|Name=TCONS_00015558|organism=Clytia hemisphaerica|type=CDS|length=606bp|location=Sequence derived from alignment at sc0000212:32810..34521 (Clytia hemisphaerica)
ttaaacattttgatCACTGTCGAAAAGAGTTAACAAAGGAATATGAATAT
TATGATGTTTCATATACGACAAAAAGACACCATACAAAAGCCCATACAAC
AAATCAGCAGTTGTACGCAAGTGCAGCGGAACAAAGCGTACAACACAATA
CATGAAAGGGTAGTACACAGTAGAATCTGTTAAATAAGTCGGTAGAAACT
TCTTAGAGACTTCTTCTCTCGTTTCTGCTGTGGTTTGCCCTTCCAAATAG
CCAGTAAAGTAATAAAATGTAACGGTCTCTACAGGTGAAAAACATAACAT
GTAAATCAATATTTGAGTGTGGAAACGTCTTTGTAGGATAGCATTACGAG
CCATAAAACCATACCAAAGATGAGCTGTCACACCATACATAAGACCCCAA
GCAGCCATACACGAGGTTCTCTTAAAATCGATTGTGGGTCGTTTCTCGAT
ACATTTCTGCTCGAAAATATCACCAATTGTGAATAAAGAAACACCAATCA
AAGAATTTGACAGGAAAAGGTTTTTCTTGTACACAATACCATAGTATTTT
GTTGAAGTTTCGACGATACTTTTTGTGAAACGTCTCAAAGTTGACAATAA
AACCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00015558-exon-sc0000212-1491911889:32810..34521 | TCONS_00015558-exon-sc0000212-1491911889:32810..34521 | Clytia hemisphaerica | exon |
| TCONS_00015558-exon-sc0000212-1510915933:32810..34521 | TCONS_00015558-exon-sc0000212-1510915933:32810..34521 | Clytia hemisphaerica | exon |
| TCONS_00015558-exon-sc0000212-1575043694:32810..34521 | TCONS_00015558-exon-sc0000212-1575043694:32810..34521 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000212 | supercontig | sc0000212:32810..34521 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR007248 | Mpv17_PMP22 |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| cellular_component |
GO:0016021 |
integral component of membrane |
Blast
The following BLAST results are available for this feature:
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