TCONS_00015516 (transcript) - C. hemisphaerica

Overview
NameTCONS_00015516
Unique NameTCONS_00015516
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1677

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00015516 ID=TCONS_00015516|Name=TCONS_00015516|organism=Clytia hemisphaerica|type=transcript|length=1677bp
CAGGAATCGTTTCAAGAAAGAGCGAGTCGAATGTGATGGTGAAAAATGTT
CTCGATGTCTGTCTTGGTGGAATGACCTTCTGGTTGTTTGGTTTCGGTTT
CATTTTCGGACCTGATTCTAGTGAAAATGTGAATAAATTCAGTGGAACAG
GACATTGGGCAGTTACTGTAGATGTGGAAAATGAAGCAGCTACTTATACG
CAAATGTTTTTTCATCTGTCGTTCTCCACGGCTGCTACCACTATCGTCTC
AGGTGCTGTAGCAGAACGGGTCCATTTACCTGCATATATGATTTTCGCCG
CCATCAACACAGGGCTTATCTATGTTTTTCCTGCGCATTGGGCGTGGGGT
GGTGGTTGGTTGAGTCAAGaagctttctttgattttgctGGCTCATCAGT
GGTTCATATGGCGGGGGGTATCGCCGCCCTTGTTGCCGCCATTATTATGG
GTCCACGCCACAACCGCTTCACTCCAAAGGAAGGGGAGGAAGATCTGTAC
GATATGTCAAGTCCAACAAATATCATCCTTGGAACATTCTTTTTGTGGTG
GGGATGGATTGGATTCAACTGTGGCTCCACCTTCGCTGTCACTGGAGGTG
GTTGGAAAATTGCCAGTAAAACAGCAGTTGTTACGATGAATGGAGCTATG
GCTGGAGGATTATCAGCTGTGTTCCTTTCTGCTATACTTTACTTATCACA
CAGACGAAAGTATATTTTAGACATCACGTTTTTAGCATCTGGTATTTTGG
GCGGATTGGTTGGCGTGACTGCTTGCGCCCCTATTATTCGACCCTGGGAA
GGTCTTTTTCTTGGATTCGTTGGAGGAATGATTGCTAATGGAGCCAACGA
ACTTGTTCTCAAATTGAAGATTGACGATCCAGTTGGTGCATTTGGAGTTC
ATTATGCTGCTGGGTTATGGTCGATGATCGCTACTGGTCTCTTTGCCGAG
AAAATCCCTGGAATTGGTTTGGCTCCAGAAGATGGGGCGTTCAAGGGTGG
CAATGGTAACTTATTGGCGTGGAATCTTGCCGGAGCATTAGCAATTACTT
GTTGGAGTGGTGGTTTAGCTGCAGTCGTGTTCTTGATATTGAAATACACA
ATCGGAATCCGTATGTCATTGGATCACGAGATAAAAGGATCAGACGAAGT
CGATCATAACATCAAAGACGCATTACCACCCACTGAACGTAAACGAAAAC
ATACTCTGGGTAGATATGTTGAAAAGAAATTGAGTGTTGTCAGCAGAAAA
TTTAGCAGTTCTAATGGAAGTAAGGGAATGAATATGGAGCCtgtacgaaa
aaataataatgtcATTTCTGAAGTACCAGAGGTCTGAGGAGACTGTCAAC
CAATAGATTTTCTGATTACATACACgtgtttcatttaaaaatatctAGCA
CTCTtataaattcatgatattcatgacgtaatattttctacggaaatacc
ccggttttagccagtggTGGCAAATTTACAGTAGACAAAAGTTgcataaa
atttgccactaatGGCAAAAACTGGGGTCTTTCCGTAAAAAACCGAATAT
CATGCATAGAAGAACGGCGAAAGTGATCTAAAGGTCAAATAGGAGTTAAA
ATCCACTCTCTATGGCATGGATATGGGTAtcctactcttgtctcccgaat
agacggggggtccAAATAAGCAGGGgc
Run BLAST on NCBI

protein sequence of TCONS_00015516-protein

>TCONS_00015516-protein ID=TCONS_00015516-protein|Name=TCONS_00015516-protein|organism=Clytia hemisphaerica|type=polypeptide|length=444bp
GIVSRKSESNVMVKNVLDVCLGGMTFWLFGFGFIFGPDSSENVNKFSGTG
HWAVTVDVENEAATYTQMFFHLSFSTAATTIVSGAVAERVHLPAYMIFAA
INTGLIYVFPAHWAWGGGWLSQEAFFDFAGSSVVHMAGGIAALVAAIIMG
PRHNRFTPKEGEEDLYDMSSPTNIILGTFFLWWGWIGFNCGSTFAVTGGG
WKIASKTAVVTMNGAMAGGLSAVFLSAILYLSHRRKYILDITFLASGILG
GLVGVTACAPIIRPWEGLFLGFVGGMIANGANELVLKLKIDDPVGAFGVH
YAAGLWSMIATGLFAEKIPGIGLAPEDGAFKGGNGNLLAWNLAGALAITC
WSGGLAAVVFLILKYTIGIRMSLDHEIKGSDEVDHNIKDALPPTERKRKH
TLGRYVEKKLSVVSRKFSSSNGSKGMNMEPVRKNNNVISEVPEV
Run BLAST on NCBI

transcript from alignment at sc0000212:272029..276138+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00015516 ID=TCONS_00015516|Name=TCONS_00015516|organism=Clytia hemisphaerica|type=transcript|length=4110bp|location=Sequence derived from alignment at sc0000212:272029..276138+ (Clytia hemisphaerica)
CAGGAATCGTTTCAAGAAAGAGCGAGTCGAATGTGATGGTGAAAAATGTT
CTCGATGTCTGTCTTGGTGGAATGACCTTCTGGTTGTTTGGTTTCGGTTT
CATTTTCGGACCTGATTCTAGTGAAAATGTGAATAAATTCAGTGGAACAG
GACATTGGGCAGTTACTGTAGATGTGGAAAATGAAGCAGCTACTTATACG
CAAATGTTTTTTCATCTGTCGTTCTCCACGGCTGCTACCACTATCGTCTC
AGGTTGGTTCTGAATTACATTATTTTGAAAAGGTTTCAGTTACCGTTAAT
GTAATattaattgatttttaatattgaaatttcgaCGCACAATTTGTAAA
TCCTTGCTTTTTTGTCTCAGGTGCTGTAGCAGAACGGGTCCATTTACCTG
CATATATGATTTTCGCCGCCATCAACACAGGGCTTATCTATGTTTTTCCT
GCGCATTGGGCGTGGGGTGGTGGTTGGTTGAGTCAAGaagctttctttga
ttttgctGGCTCATCAGTGGTTCATATGGCGGGGGGTATCGCCGCCCTTG
TTGCCGCCATTATTATGGGTCCACGCCACAACCGCTTCACTCCAAAGGAA
GGGGAGGAAGATCTGTACGATATGTCAAGTCCAACAAATATCATCCTTGG
AACATTCTTTTTGTGGTGGGGATGGATTGGATTCAACTGTGGCTCCACCT
TCGCTGTCACTGGAGGTGGTTGGAAAATTGCCAGTAAAACAGCAGTTGTT
ACGATGAATGGAGCTATGGCTGGAGGATTATCAGCTGTGTTCCTTTCTGC
TATACTTTACTTATCACACAGACGAAAGTATATTTTAGACATCACGTTTT
TAGCATCTGGTATTTTGGGCGGATTGGTTGGCGTGACTGCTTGCGCCCCT
ATTATTCGACCCTGGGAAGGTCTTTTTCTTGGATTCGTTGGAGGAATGAT
TGCTAATGGAGGTAAGATAGTATTGAATTTGAATCATAAATAACCTCATA
GCTcatacaatcagtgccataatatattggcacttttggctaatttacca
tttttcgaaaattgaagatcgagcgagaatgtcaacttcaggccttcaac
ttaatttcatcgattatttcgatctgggagggatttattggctatatttc
aagccctaatggaccatttttgaacttttggatcctcaaatCCTAAGTTC
GTAAGTCTTaaatctagcgttaaaactcagagttataactctacccttcg
aatctattttagagcacttgcaaatcgattgtggtttcaaaacaccccag
taaatttcccttttgtgccaagtattttgtgacTGATTGTAGTTCGAAGT
TTAAGGCTATACACTTAACAGTGCTTGCGTTaaaatttgtattaaaaaga
AGAGGTTAAAAGAGTCGTCAAATGTATGCCCTTGCATTTATTCAGTGACA
AGTCAACTTGGTAACCTCGTACACAGTCACTTCAAAGTGTCTTTTTATCT
CGGTTTTTGCCTTGCGGTGgccttttaaatgaaaaatgttgTATTTAAAT
CTCcgaatcttttttttctctagTCAACGAACTGTTAATCAAATTGAAGA
TTGACGATCCAGTTGGAGCTTTTGGAGTTCATTATGCTGCTGGATTATGG
TCGATGATCGCTACTGGTTTCTTTGCAGAGAAAATCCCTGGTATTGGTTT
AGCTCCGGAAGATGGCGTCTTTAAGGGCGGTAATGGTGGCCTATTGGCGT
GGAATCTTGCTGGATGTTTGGCAATCACTTTGTGGAGTGGTGGTTTAGCT
ACTATCGTGgtaagttattttaactacttgtacttattgttaaattgtta
aattgttaatACTAGTCTCGTCACAAAACCTTTAGCCGTTCTCCCAGATC
TCTCCATAAAAATCAAAAGGGAACTATTGAAAACTCTTGAAATTAATTTA
AGATCTTATATTGACAAGCCCAATATTTGAATAAACCATTAATTGAAAGA
TTTAACTTTAATTTATCCATCTAATTCAATACCTATCCAATATTTCTATC
AATACAAAACTATCCTCTCTTTTCTTTTCAGTTCTTGACACTGAAATACA
CAATTGGAATCCGTATGTCTTTGGATCATGAATTGAAAGGCTCTGACGCG
GTTGAGCATAACATCCATGAGGTACCCAAACCTCAAGAACGAAACCACGC
CCTGGGAAAGACGGTTGAATATCCTGAGAGAGAAAGCCCTGTTCATGTTC
AAATGGTCAAAGCAAATAATTTTGCTGCGTAAGAAAACTTTTCAGATTTT
ATATTTAAAGTATTTTGAACTTTCTTTGAGGGAGATCAATATTaaaattt
gtatatatttttttgtctaGAATTTTGTAATGTAATAGTTAAATTTGAGA
ACATATCTTTTTAAGCATAAAACTTATTACTTTCTACAGGCCATTAAGTT
TTCAGACCTTCGGACCTATTGAAACAGTTTTCAATATCAGCCAATCAAAG
TCTTTAATCTTGGTTTTTTAACCATTTGAAACCTTTACACTCAAAAAATT
ATCTCTTATTCGTTGTTTGTCGTTTGTCTGACAAACATATCCTGNACATA
TCGAGTTCCCGGATagtttcaaaaaagatttcaattctCTAAGACAATAA
CTATTCTTTCCTGGTTTAACTATATGAAAAACATTCTGTTTTAGCCAACG
AACTTGTTCTCAAATTGAAGATTGACGATCCAGTTGGTGCATTTGGAGTT
CATTATGCTGCTGGGTTATGGTCGATGATCGCTACTGGTCTCTTTGCCGA
GAAAATCCCTGGAATTGGTTTGGCTCCAGAAGATGGGGCGTTCAAGGGTG
GCAATGGTAACTTATTGGCGTGGAATCTTGCCGGAGCATTAGCAATTACT
TGTTGGAGTGGTGGTTTAGCTGCAGTCGTGGTATGTATAGTCTTGATTTA
TTATATGCTATATATAAGGAACGAATACGACTGTAACTTTCCAACACATA
TTTTGACCATGTCATTTGCAGTGTAGTCCtctctccctaattcgaattTA
ATGGGAGAATATTTATTCTTCAAATTAGAGGAATATTCCAATTATAGAGA
ACATTTTACACTAGTTTCTAGATCAGGGCTTATTGGCTTATTttctagtt
cgaattatagaggttcgaatgaGGGTGTATTGAGTGTACATGTTTATGGT
TAGAAACAGTCCatcgcaattttttttttttgctcgtaTTCCAAATATTG
GAAAATCAATAGGcaatgctatcgtccgtataatatattattatgatata
acatattttgtatattataaaacgtaatatgttgcgcGGCGGATATAGTC
TGTTTTGAAACAGCTACCCCCAAAAAACTctcgtcttcacgtttgttcct
cttagatgaaactcgtcgtAGACTATAGCATAGACTAGGAAGTCAtataa
gaaaaatcaaagagacATGGTGGCAAACAATAATTTTAGCTATAtttctt
ctttcatttcagTTCTTGATATTGAAATACACAATCGGAATCCGTATGTC
ATTGGATCACGAGATAAAAGGATCAGACGAAGTCGATCATAACATCAAAG
ACGCATTACCACCCACTGAACGTAAACGAAAACATACTCTGGGTAGATAT
GTTGAAAAGAAATTGAGTGTTGTCAGCAGAAAATTTAGCAGTTCTAATGG
AAGTAAGGGAATGAATATGGAGCCtgtacgaaaaaataataatgtcATTT
CTGAAGTACCAGAGGTCTGAGGAGACTGTCAACCAATAGATTTTCTGATT
ACATACACgtgtttcatttaaaaatatctAGCACTCTtataaattcatga
tattcatgacgtaatattttctacggaaataccccggttttagccagtgg
TGGCAAATTTACAGTAGACAAAAGTTgcataaaatttgccactaatGGCA
AAAACTGGGGTCTTTCCGTAAAAAACCGAATATCATGCATAGAAGAACGG
CGAAAGTGATCTAAAGGTCAAATAGGAGTTAAAATCCACTCTCTATGGCA
TGGATATGGGTAtcctactcttgtctcccgaatagacggggggtccAAAT
AAGCAGGGgc

Coding sequence (CDS) from alignment at sc0000212:272029..276138+

>TCONS_00015516 ID=TCONS_00015516|Name=TCONS_00015516|organism=Clytia hemisphaerica|type=CDS|length=5340bp|location=Sequence derived from alignment at sc0000212:272029..276138+ (Clytia hemisphaerica)
GGAATCGTTTCAAGAAAGAGCGAGTCGAATGTGATGGTGAAAAATGTTCT
CGATGTCTGTCTTGGTGGAATGACCTTCTGGTTGTTTGGTTTCGGTTTCA
TTTTCGGACCTGATTCTAGTGAAAATGTGAATAAATTCAGTGGAACAGGA
CATTGGGCAGTTACTGTAGATGTGGAAAATGAAGCAGCTACTTATACGCA
AATGTTTTTTCATCTGTCGTTCTCCACGGCTGCTACCACTATCGTCTCAG
GTGCTGTAGCAGAACGGGTCCATTTACCTGCATATATGATTTTCGCCGCC
ATCAACACAGGGCTTATCTATGTTTTTCCTGCGCATTGGGCGTGGGGTGG
TGGTTGGTTGAGTCAAGaagctttctttgattttgctGGCTCATCAGTGG
TTCATATGGCGGGGGGTATCGCCGCCCTTGTTGCCGCCATTATTATGGGT
CCACGCCACAACCGCTTCACTCCAAAGGAAGGGGAGGAAGATCTGTACGA
TATGTCAAGTCCAACAAATATCATCCTTGGAACATTCTTTTTGTGGTGGG
GATGGATTGGATTCAACTGTGGCTCCACCTTCGCTGTCACTGGAGGTGGT
TGGAAAATTGCCAGTAAAACAGCAGTTGTTACGATGAATGGAGCTATGGC
TGGAGGATTATCAGCTGTGTTCCTTTCTGCTATACTTTACTTATCACACA
GACGAAAGTATATTTTAGACATCACGTTTTTAGCATCTGGTATTTTGGGC
GGATTGGTTGGCGTGACTGCTTGCGCCCCTATTATTCGACCCTGGGAAGG
TCTTTTTCTTGGATTCGTTGGAGGAATGATTGCTAATGGAGCCAACGAAC
TTGTTCTCAAATTGAAGATTGACGATCCAGTTGGTGCATTTGGAGTTCAT
TATGCTGCTGGGTTATGGTCGATGATCGCTACTGGTCTCTTTGCCGAGAA
AATCCCTGGAATTGGTTTGGCTCCAGAAGATGGGGCGTTCAAGGGTGGCA
ATGGTAACTTATTGGCGTGGAATCTTGCCGGAGCATTAGCAATTACTTGT
TGGAGTGGTGGTTTAGCTGCAGTCGTGTTCTTGATATTGAAATACACAAT
CGGAATCCGTATGTCATTGGATCACGAGATAAAAGGATCAGACGAAGTCG
ATCATAACATCAAAGACGCATTACCACCCACTGAACGTAAACGAAAACAT
ACTCTGGGTAGATATGTTGAAAAGAAATTGAGTGTTGTCAGCAGAAAATT
TAGCAGTTCTAATGGAAGTAAGGGAATGAATATGGAGCCtgtacgaaaaa
ataataatgtcATTTCTGAAGTACCAGAGGTCTGAGGAATCGTTTCAAGA
AAGAGCGAGTCGAATGTGATGGTGAAAAATGTTCTCGATGTCTGTCTTGG
TGGAATGACCTTCTGGTTGTTTGGTTTCGGTTTCATTTTCGGACCTGATT
CTAGTGAAAATGTGAATAAATTCAGTGGAACAGGACATTGGGCAGTTACT
GTAGATGTGGAAAATGAAGCAGCTACTTATACGCAAATGTTTTTTCATCT
GTCGTTCTCCACGGCTGCTACCACTATCGTCTCAGGTGCTGTAGCAGAAC
GGGTCCATTTACCTGCATATATGATTTTCGCCGCCATCAACACAGGGCTT
ATCTATGTTTTTCCTGCGCATTGGGCGTGGGGTGGTGGTTGGTTGAGTCA
AGaagctttctttgattttgctGGCTCATCAGTGGTTCATATGGCGGGGG
GTATCGCCGCCCTTGTTGCCGCCATTATTATGGGTCCACGCCACAACCGC
TTCACTCCAAAGGAAGGGGAGGAAGATCTGTACGATATGTCAAGTCCAAC
AAATATCATCCTTGGAACATTCTTTTTGTGGTGGGGATGGATTGGATTCA
ACTGTGGCTCCACCTTCGCTGTCACTGGAGGTGGTTGGAAAATTGCCAGT
AAAACAGCAGTTGTTACGATGAATGGAGCTATGGCTGGAGGATTATCAGC
TGTGTTCCTTTCTGCTATACTTTACTTATCACACAGACGAAAGTATATTT
TAGACATCACGTTTTTAGCATCTGGTATTTTGGGCGGATTGGTTGGCGTG
ACTGCTTGCGCCCCTATTATTCGACCCTGGGAAGGTCTTTTTCTTGGATT
CGTTGGAGGAATGATTGCTAATGGAGCCAACGAACTTGTTCTCAAATTGA
AGATTGACGATCCAGTTGGTGCATTTGGAGTTCATTATGCTGCTGGGTTA
TGGTCGATGATCGCTACTGGTCTCTTTGCCGAGAAAATCCCTGGAATTGG
TTTGGCTCCAGAAGATGGGGCGTTCAAGGGTGGCAATGGTAACTTATTGG
CGTGGAATCTTGCCGGAGCATTAGCAATTACTTGTTGGAGTGGTGGTTTA
GCTGCAGTCGTGTTCTTGATATTGAAATACACAATCGGAATCCGTATGTC
ATTGGATCACGAGATAAAAGGATCAGACGAAGTCGATCATAACATCAAAG
ACGCATTACCACCCACTGAACGTAAACGAAAACATACTCTGGGTAGATAT
GTTGAAAAGAAATTGAGTGTTGTCAGCAGAAAATTTAGCAGTTCTAATGG
AAGTAAGGGAATGAATATGGAGCCtgtacgaaaaaataataatgtcATTT
CTGAAGTACCAGAGGTCTGAGGAATCGTTTCAAGAAAGAGCGAGTCGAAT
GTGATGGTGAAAAATGTTCTCGATGTCTGTCTTGGTGGAATGACCTTCTG
GTTGTTTGGTTTCGGTTTCATTTTCGGACCTGATTCTAGTGAAAATGTGA
ATAAATTCAGTGGAACAGGACATTGGGCAGTTACTGTAGATGTGGAAAAT
GAAGCAGCTACTTATACGCAAATGTTTTTTCATCTGTCGTTCTCCACGGC
TGCTACCACTATCGTCTCAGGTGCTGTAGCAGAACGGGTCCATTTACCTG
CATATATGATTTTCGCCGCCATCAACACAGGGCTTATCTATGTTTTTCCT
GCGCATTGGGCGTGGGGTGGTGGTTGGTTGAGTCAAGaagctttctttga
ttttgctGGCTCATCAGTGGTTCATATGGCGGGGGGTATCGCCGCCCTTG
TTGCCGCCATTATTATGGGTCCACGCCACAACCGCTTCACTCCAAAGGAA
GGGGAGGAAGATCTGTACGATATGTCAAGTCCAACAAATATCATCCTTGG
AACATTCTTTTTGTGGTGGGGATGGATTGGATTCAACTGTGGCTCCACCT
TCGCTGTCACTGGAGGTGGTTGGAAAATTGCCAGTAAAACAGCAGTTGTT
ACGATGAATGGAGCTATGGCTGGAGGATTATCAGCTGTGTTCCTTTCTGC
TATACTTTACTTATCACACAGACGAAAGTATATTTTAGACATCACGTTTT
TAGCATCTGGTATTTTGGGCGGATTGGTTGGCGTGACTGCTTGCGCCCCT
ATTATTCGACCCTGGGAAGGTCTTTTTCTTGGATTCGTTGGAGGAATGAT
TGCTAATGGAGCCAACGAACTTGTTCTCAAATTGAAGATTGACGATCCAG
TTGGTGCATTTGGAGTTCATTATGCTGCTGGGTTATGGTCGATGATCGCT
ACTGGTCTCTTTGCCGAGAAAATCCCTGGAATTGGTTTGGCTCCAGAAGA
TGGGGCGTTCAAGGGTGGCAATGGTAACTTATTGGCGTGGAATCTTGCCG
GAGCATTAGCAATTACTTGTTGGAGTGGTGGTTTAGCTGCAGTCGTGTTC
TTGATATTGAAATACACAATCGGAATCCGTATGTCATTGGATCACGAGAT
AAAAGGATCAGACGAAGTCGATCATAACATCAAAGACGCATTACCACCCA
CTGAACGTAAACGAAAACATACTCTGGGTAGATATGTTGAAAAGAAATTG
AGTGTTGTCAGCAGAAAATTTAGCAGTTCTAATGGAAGTAAGGGAATGAA
TATGGAGCCtgtacgaaaaaataataatgtcATTTCTGAAGTACCAGAGG
TCTGAGGAATCGTTTCAAGAAAGAGCGAGTCGAATGTGATGGTGAAAAAT
GTTCTCGATGTCTGTCTTGGTGGAATGACCTTCTGGTTGTTTGGTTTCGG
TTTCATTTTCGGACCTGATTCTAGTGAAAATGTGAATAAATTCAGTGGAA
CAGGACATTGGGCAGTTACTGTAGATGTGGAAAATGAAGCAGCTACTTAT
ACGCAAATGTTTTTTCATCTGTCGTTCTCCACGGCTGCTACCACTATCGT
CTCAGGTGCTGTAGCAGAACGGGTCCATTTACCTGCATATATGATTTTCG
CCGCCATCAACACAGGGCTTATCTATGTTTTTCCTGCGCATTGGGCGTGG
GGTGGTGGTTGGTTGAGTCAAGaagctttctttgattttgctGGCTCATC
AGTGGTTCATATGGCGGGGGGTATCGCCGCCCTTGTTGCCGCCATTATTA
TGGGTCCACGCCACAACCGCTTCACTCCAAAGGAAGGGGAGGAAGATCTG
TACGATATGTCAAGTCCAACAAATATCATCCTTGGAACATTCTTTTTGTG
GTGGGGATGGATTGGATTCAACTGTGGCTCCACCTTCGCTGTCACTGGAG
GTGGTTGGAAAATTGCCAGTAAAACAGCAGTTGTTACGATGAATGGAGCT
ATGGCTGGAGGATTATCAGCTGTGTTCCTTTCTGCTATACTTTACTTATC
ACACAGACGAAAGTATATTTTAGACATCACGTTTTTAGCATCTGGTATTT
TGGGCGGATTGGTTGGCGTGACTGCTTGCGCCCCTATTATTCGACCCTGG
GAAGGTCTTTTTCTTGGATTCGTTGGAGGAATGATTGCTAATGGAGCCAA
CGAACTTGTTCTCAAATTGAAGATTGACGATCCAGTTGGTGCATTTGGAG
TTCATTATGCTGCTGGGTTATGGTCGATGATCGCTACTGGTCTCTTTGCC
GAGAAAATCCCTGGAATTGGTTTGGCTCCAGAAGATGGGGCGTTCAAGGG
TGGCAATGGTAACTTATTGGCGTGGAATCTTGCCGGAGCATTAGCAATTA
CTTGTTGGAGTGGTGGTTTAGCTGCAGTCGTGTTCTTGATATTGAAATAC
ACAATCGGAATCCGTATGTCATTGGATCACGAGATAAAAGGATCAGACGA
AGTCGATCATAACATCAAAGACGCATTACCACCCACTGAACGTAAACGAA
AACATACTCTGGGTAGATATGTTGAAAAGAAATTGAGTGTTGTCAGCAGA
AAATTTAGCAGTTCTAATGGAAGTAAGGGAATGAATATGGAGCCtgtacg
aaaaaataataatgtcATTTCTGAAGTACCAGAGGTCTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008658XLOC_008658Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00015516-exon-sc0000212-1491911889:272029..272280TCONS_00015516-exon-sc0000212-1491911889:272029..272280Clytia hemisphaericaexon
TCONS_00015516-exon-sc0000212-1510915933:272029..272280TCONS_00015516-exon-sc0000212-1510915933:272029..272280Clytia hemisphaericaexon
TCONS_00015516-exon-sc0000212-1575043694:272029..272280TCONS_00015516-exon-sc0000212-1575043694:272029..272280Clytia hemisphaericaexon
TCONS_00015516-exon-sc0000212-1491911889:272399..272989TCONS_00015516-exon-sc0000212-1491911889:272399..272989Clytia hemisphaericaexon
TCONS_00015516-exon-sc0000212-1510915933:272399..272989TCONS_00015516-exon-sc0000212-1510915933:272399..272989Clytia hemisphaericaexon
TCONS_00015516-exon-sc0000212-1575043694:272399..272989TCONS_00015516-exon-sc0000212-1575043694:272399..272989Clytia hemisphaericaexon
TCONS_00015516-exon-sc0000212-1491911889:274723..274958TCONS_00015516-exon-sc0000212-1491911889:274723..274958Clytia hemisphaericaexon
TCONS_00015516-exon-sc0000212-1510915933:274723..274958TCONS_00015516-exon-sc0000212-1510915933:274723..274958Clytia hemisphaericaexon
TCONS_00015516-exon-sc0000212-1575043694:274723..274958TCONS_00015516-exon-sc0000212-1575043694:274723..274958Clytia hemisphaericaexon
TCONS_00015516-exon-sc0000212-1491911889:275541..276138TCONS_00015516-exon-sc0000212-1491911889:275541..276138Clytia hemisphaericaexon
TCONS_00015516-exon-sc0000212-1510915933:275541..276138TCONS_00015516-exon-sc0000212-1510915933:275541..276138Clytia hemisphaericaexon
TCONS_00015516-exon-sc0000212-1575043694:275541..276138TCONS_00015516-exon-sc0000212-1575043694:275541..276138Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00015516-proteinTCONS_00015516-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000212supercontigsc0000212:272029..276138 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
96.8363	86.9062	324.207	372.979	0.787539	1.22589	3.71532	3.12427	4.47909	7.02439	1.91784	7.40719	39.0854	42.4577	14.483	21.7797	9.20331	24.7459	27.3246	33.8106	0.091366	0.139264	25.6163	22.3056	0.115462	0	14.1386	8.93098	13.6313	13.5887
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR024041NH4_transpt_AmtB-like_dom
IPR018047Ammonium_transpt_CS
Vocabulary: Molecular Function
TermDefinition
GO:0008519ammonium transmembrane transporter activity
Vocabulary: Biological Process
TermDefinition
GO:0015696ammonium transport
GO:0072488ammonium transmembrane transport
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0072488 ammonium transmembrane transport
biological_process GO:0015696 ammonium transport
cellular_component GO:0016020 membrane
molecular_function GO:0008519 ammonium transmembrane transporter activity
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00015516 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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