XLOC_008658 (gene) - C. hemisphaerica

Overview
NameXLOC_008658
Unique NameXLOC_008658
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0000212:272029..276138+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_008658 ID=XLOC_008658|Name=XLOC_008658|organism=Clytia hemisphaerica|type=gene|length=4110bp|location=Sequence derived from alignment at sc0000212:272029..276138+ (Clytia hemisphaerica)
CAGGAATCGTTTCAAGAAAGAGCGAGTCGAATGTGATGGTGAAAAATGTT
CTCGATGTCTGTCTTGGTGGAATGACCTTCTGGTTGTTTGGTTTCGGTTT
CATTTTCGGACCTGATTCTAGTGAAAATGTGAATAAATTCAGTGGAACAG
GACATTGGGCAGTTACTGTAGATGTGGAAAATGAAGCAGCTACTTATACG
CAAATGTTTTTTCATCTGTCGTTCTCCACGGCTGCTACCACTATCGTCTC
AGGTTGGTTCTGAATTACATTATTTTGAAAAGGTTTCAGTTACCGTTAAT
GTAATattaattgatttttaatattgaaatttcgaCGCACAATTTGTAAA
TCCTTGCTTTTTTGTCTCAGGTGCTGTAGCAGAACGGGTCCATTTACCTG
CATATATGATTTTCGCCGCCATCAACACAGGGCTTATCTATGTTTTTCCT
GCGCATTGGGCGTGGGGTGGTGGTTGGTTGAGTCAAGaagctttctttga
ttttgctGGCTCATCAGTGGTTCATATGGCGGGGGGTATCGCCGCCCTTG
TTGCCGCCATTATTATGGGTCCACGCCACAACCGCTTCACTCCAAAGGAA
GGGGAGGAAGATCTGTACGATATGTCAAGTCCAACAAATATCATCCTTGG
AACATTCTTTTTGTGGTGGGGATGGATTGGATTCAACTGTGGCTCCACCT
TCGCTGTCACTGGAGGTGGTTGGAAAATTGCCAGTAAAACAGCAGTTGTT
ACGATGAATGGAGCTATGGCTGGAGGATTATCAGCTGTGTTCCTTTCTGC
TATACTTTACTTATCACACAGACGAAAGTATATTTTAGACATCACGTTTT
TAGCATCTGGTATTTTGGGCGGATTGGTTGGCGTGACTGCTTGCGCCCCT
ATTATTCGACCCTGGGAAGGTCTTTTTCTTGGATTCGTTGGAGGAATGAT
TGCTAATGGAGGTAAGATAGTATTGAATTTGAATCATAAATAACCTCATA
GCTcatacaatcagtgccataatatattggcacttttggctaatttacca
tttttcgaaaattgaagatcgagcgagaatgtcaacttcaggccttcaac
ttaatttcatcgattatttcgatctgggagggatttattggctatatttc
aagccctaatggaccatttttgaacttttggatcctcaaatCCTAAGTTC
GTAAGTCTTaaatctagcgttaaaactcagagttataactctacccttcg
aatctattttagagcacttgcaaatcgattgtggtttcaaaacaccccag
taaatttcccttttgtgccaagtattttgtgacTGATTGTAGTTCGAAGT
TTAAGGCTATACACTTAACAGTGCTTGCGTTaaaatttgtattaaaaaga
AGAGGTTAAAAGAGTCGTCAAATGTATGCCCTTGCATTTATTCAGTGACA
AGTCAACTTGGTAACCTCGTACACAGTCACTTCAAAGTGTCTTTTTATCT
CGGTTTTTGCCTTGCGGTGgccttttaaatgaaaaatgttgTATTTAAAT
CTCcgaatcttttttttctctagTCAACGAACTGTTAATCAAATTGAAGA
TTGACGATCCAGTTGGAGCTTTTGGAGTTCATTATGCTGCTGGATTATGG
TCGATGATCGCTACTGGTTTCTTTGCAGAGAAAATCCCTGGTATTGGTTT
AGCTCCGGAAGATGGCGTCTTTAAGGGCGGTAATGGTGGCCTATTGGCGT
GGAATCTTGCTGGATGTTTGGCAATCACTTTGTGGAGTGGTGGTTTAGCT
ACTATCGTGgtaagttattttaactacttgtacttattgttaaattgtta
aattgttaatACTAGTCTCGTCACAAAACCTTTAGCCGTTCTCCCAGATC
TCTCCATAAAAATCAAAAGGGAACTATTGAAAACTCTTGAAATTAATTTA
AGATCTTATATTGACAAGCCCAATATTTGAATAAACCATTAATTGAAAGA
TTTAACTTTAATTTATCCATCTAATTCAATACCTATCCAATATTTCTATC
AATACAAAACTATCCTCTCTTTTCTTTTCAGTTCTTGACACTGAAATACA
CAATTGGAATCCGTATGTCTTTGGATCATGAATTGAAAGGCTCTGACGCG
GTTGAGCATAACATCCATGAGGTACCCAAACCTCAAGAACGAAACCACGC
CCTGGGAAAGACGGTTGAATATCCTGAGAGAGAAAGCCCTGTTCATGTTC
AAATGGTCAAAGCAAATAATTTTGCTGCGTAAGAAAACTTTTCAGATTTT
ATATTTAAAGTATTTTGAACTTTCTTTGAGGGAGATCAATATTaaaattt
gtatatatttttttgtctaGAATTTTGTAATGTAATAGTTAAATTTGAGA
ACATATCTTTTTAAGCATAAAACTTATTACTTTCTACAGGCCATTAAGTT
TTCAGACCTTCGGACCTATTGAAACAGTTTTCAATATCAGCCAATCAAAG
TCTTTAATCTTGGTTTTTTAACCATTTGAAACCTTTACACTCAAAAAATT
ATCTCTTATTCGTTGTTTGTCGTTTGTCTGACAAACATATCCTGNACATA
TCGAGTTCCCGGATagtttcaaaaaagatttcaattctCTAAGACAATAA
CTATTCTTTCCTGGTTTAACTATATGAAAAACATTCTGTTTTAGCCAACG
AACTTGTTCTCAAATTGAAGATTGACGATCCAGTTGGTGCATTTGGAGTT
CATTATGCTGCTGGGTTATGGTCGATGATCGCTACTGGTCTCTTTGCCGA
GAAAATCCCTGGAATTGGTTTGGCTCCAGAAGATGGGGCGTTCAAGGGTG
GCAATGGTAACTTATTGGCGTGGAATCTTGCCGGAGCATTAGCAATTACT
TGTTGGAGTGGTGGTTTAGCTGCAGTCGTGGTATGTATAGTCTTGATTTA
TTATATGCTATATATAAGGAACGAATACGACTGTAACTTTCCAACACATA
TTTTGACCATGTCATTTGCAGTGTAGTCCtctctccctaattcgaattTA
ATGGGAGAATATTTATTCTTCAAATTAGAGGAATATTCCAATTATAGAGA
ACATTTTACACTAGTTTCTAGATCAGGGCTTATTGGCTTATTttctagtt
cgaattatagaggttcgaatgaGGGTGTATTGAGTGTACATGTTTATGGT
TAGAAACAGTCCatcgcaattttttttttttgctcgtaTTCCAAATATTG
GAAAATCAATAGGcaatgctatcgtccgtataatatattattatgatata
acatattttgtatattataaaacgtaatatgttgcgcGGCGGATATAGTC
TGTTTTGAAACAGCTACCCCCAAAAAACTctcgtcttcacgtttgttcct
cttagatgaaactcgtcgtAGACTATAGCATAGACTAGGAAGTCAtataa
gaaaaatcaaagagacATGGTGGCAAACAATAATTTTAGCTATAtttctt
ctttcatttcagTTCTTGATATTGAAATACACAATCGGAATCCGTATGTC
ATTGGATCACGAGATAAAAGGATCAGACGAAGTCGATCATAACATCAAAG
ACGCATTACCACCCACTGAACGTAAACGAAAACATACTCTGGGTAGATAT
GTTGAAAAGAAATTGAGTGTTGTCAGCAGAAAATTTAGCAGTTCTAATGG
AAGTAAGGGAATGAATATGGAGCCtgtacgaaaaaataataatgtcATTT
CTGAAGTACCAGAGGTCTGAGGAGACTGTCAACCAATAGATTTTCTGATT
ACATACACgtgtttcatttaaaaatatctAGCACTCTtataaattcatga
tattcatgacgtaatattttctacggaaataccccggttttagccagtgg
TGGCAAATTTACAGTAGACAAAAGTTgcataaaatttgccactaatGGCA
AAAACTGGGGTCTTTCCGTAAAAAACCGAATATCATGCATAGAAGAACGG
CGAAAGTGATCTAAAGGTCAAATAGGAGTTAAAATCCACTCTCTATGGCA
TGGATATGGGTAtcctactcttgtctcccgaatagacggggggtccAAAT
AAGCAGGGgc
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00015515TCONS_00015515Clytia hemisphaericatranscript
TCONS_00015516TCONS_00015516Clytia hemisphaericatranscript
TCONS_00015517TCONS_00015517Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00015516-proteinTCONS_00015516-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000212supercontigsc0000212:272029..276138 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
145.31	132.14	332.06	376.88	15.2	7.66	18.13	18.81	12.55	36.85	7.19	68.43	65.69	59.67	30.7	69.44	13.12	37.27	34.59	39.29	2.24	3.13	32.88	29.76	0.54	2.29	22.5	18.94	13.63	16.19