TCONS_00015465 (transcript) - C. hemisphaerica

Overview
NameTCONS_00015465
Unique NameTCONS_00015465
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1018

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00015465 ID=TCONS_00015465|Name=TCONS_00015465|organism=Clytia hemisphaerica|type=transcript|length=1018bp
TTaagctaaaaaataaaagaatgatAACCAATAATAAATGTAACAGAATG
TCATCTAATTAATCAGAAACTTTGAGTGAAAATGATGAATTGTTTACCAG
ATGGAAGAGGTTTTCAATGACGAACAGAAGAATGAGACAAATTCAGAAAG
GGAACAGTTGCAACAACATCATGACGATACATTCCGAGATGAAAACGAAA
CACCTGACAAAACAGAACGAAGCCagACAAACGTAAATGTATTTCCACCA
AGGAAGAAATCATCCATCGCTTCAGTGAGCCATCAGTCGTCTTCATCCAT
GGAATTTGATGGATTATGTCCATGGAGATGCGGTCAATCAGTCACCTTTG
AAACACTCAACCACCACGTGTACCAATGCAACAAAGCTAATGCGCATGAC
CAATGCCCCTTCCAGGTGTTAGGATGCACTTATGATGGATCAATAGACGT
CAAGGAGCACATGCTAATAGAGAACGCGTCACACGCTAGTCTGTTGGTAC
CTCACGTCCTCAAAAATATGGTCTCACAAGATAAGACCGATTCTGCTATG
CAACACCAAGCCGAAGATACTGCAGACTTGAGAAGACGTCTGGAAAATGA
ATCAACTAAGAACTCTATTTTATCGAACGAAGTATGTCAGTTGAAGAGAG
AACTAGCAGAGTCGAATAAAAAACTTAATTCTTTAGAGAAAGACATGGCA
GTGGTTCGATCCACTTTTGATGTGCTGCTTCGTGAATTAAACAGTGTGAA
AAATCAAGCGGTGTCAGAGGAGCGCATCAAAAGTGTGGAAGAAACAACGG
ACAAACTAAAATTGGAGAACGCAAATGTGACAAAAAGCGTCGTGGAGAAC
CACAGTCTGATCATGCGTCTCGATGAACGAATCAATAACGTCAACTCAAA
CCTGGGTGACGTCGATTTGAGACAACAAATACTAGAGAACACTTCTGTCG
GTGGTCGATTCATTTGGAAAATCGATCGACTGAGATCTCGCATCAAACAC
TCAGCAGTGGGTAAGGTC
Run BLAST on NCBI

transcript from alignment at sc0000211:106108..112370-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00015465 ID=TCONS_00015465|Name=TCONS_00015465|organism=Clytia hemisphaerica|type=transcript|length=6263bp|location=Sequence derived from alignment at sc0000211:106108..112370- (Clytia hemisphaerica)
TTAAGCTAAAAAATAAAAGAATGATAACCAATAATAAATGTAACAGAATG
TCATCTAATTAATCAGAAACTTTGAGGTAAGCGATTTTCTTTCATTAGAA
TATGGTATCTAACAATAGGGCTAACATCTTGTGTTGTATTCCTTTTATCA
GACTTATATGAACGAGTATGTAACGCGTATAGCAAAATTTGAATTTAATA
AGCTTCTGTCAAAAGTTCAATTTTTAGAAATAATTTGGAAACTGAATAAA
AGGTAGAAATCCTTTTCAAAATTTATTTTATTTATCTATTTAAAAAAGTC
ATGTATTGTCTAAAGGCTTCTAAGGCACGCACTTCTCTACAGTGGACTAT
TGTGCGTGGACCTACAGCTTCGGCTGCCCGGCCTCAGCGGTGTCAGCTGA
CAAAGGTTATCACAGTAACATAAATTTCAACGCTCTTAAAGTTTGAATTT
TAAATTGTTAATCTTTGACAGTGAAAATGATGAATTGTTTACCAGATGGA
AGAGGTTTTCAATGACGAACAGAAGAATGAGACAAATTCAGAAAGGGAAC
AGTTGCAACAACATCATGACGATACATTCCGAGATGAAAACGAAACACCT
GACAAAACAGAACGAAGCCAGGTATGAAATTTTTTTTTTGGACCTACCCC
GGTGGAGGTCCTATAAATTAACCTCTCTTCGTCCGTCCGTCCGTCCGTCC
GTTCGTTCGTTCGTTCGTTCGTTCGTTCGTTCGTTCGTTCGTTCGTTCGT
TCGTTCGTTCGTTCGTTCGTTCGTTCGTTCGTTCGTTCGTTCGTTCGTTC
GTTCGTTCGTTCGTTCGTTACCAACTTTTCTCGAGATTGGTTAATTAGTT
TTTTCTGATTTTTTGCACAAAGATGTGTAACTATAAACTCTCGAATGTGA
AGGAGCCCGATTTTCGAAAAAAAAAAATTTGGGGCAAATTTGGGCCAAAA
AACGGCTAAAAAATGGGTTGGATCATTAATTTTTTCTGATTTTTTGCATG
AAAGTAGGGTACCATCATAGGTAAAAGATGGCTCAAGCAGATTTTCGCCA
AAAAATTTTGTTGGCTCAAAAAACGCATGTTTATCTATAAGAATCACTAT
TAATAAGCATACATCAATGTTCGTAGTCAAATTACTAATTTTCTTATGAG
ATATATGTTTTTTTGCTCATGAGGGCTTACTTTTTTGTGTGTTTAGACAT
GAAATTTTGGTTCCTTGGCGTGTTTTTATAAAAAAACTGGCCAAATACGA
TATTTTTTTATAAGCACATTATCAATTACTTAGGTATTAGCTTTTCTCGA
GATTGGCTCTTTCATTCTTTATGATTTTTTGCACNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNCGTGTTCTGAATGATTGTTTAATGGTCACGTCACGTA
GATATCAATTATAAATATGTTAAATGCACAACCAGGTAGGTCCATAAAAG
TATCACTTGTTTTTTCCAAAAAGAACTATTTGCTTACAACACGACATTAT
GTTACAGGGAAGAACGACTTTTTCCACCTCCCGTACCGCGTGATTACAAA
TTTGAAAAAAAGCTTTATATGCAATCAAAAATGATGTGATCAAGCCGTTC
ATTTTTATGAGTAACATTTATGTTGTCATTGGTAATTAAATGAAGAAGCA
CTGAAATCTCTTTCTACTTCCTTGACTAGAGTTTGTTGATGTTTGTTGAA
ATAGCTCTTAGTGATTAACATTCTCACCTATAGTTACCTCAAAGATTCGA
ACAAATACAAAACGGTCTCGACAAATCCATCTTAAAAATTATGTAGTTTT
ATGTTCATACCTTCTTTTACACTCTCTGTATCCGATTTATAATTGATTTC
CCAAACAGGCCACTGAAACTTCAAAATCAATTCTAGGTTATGTCTTGAAA
GAGTGATATGCTGATAAATGAAAAATAAACTATTTACACTTCTTCCTCCA
ATTCCAAATCCTCGTCACTGCTATCTTCGGCGGTAATATCAACTCTCATT
CCGCATAATAATTNTCGTCACTGCTATCTTCGGCGGTAATATCGACTCTC
ATTCCGCATAATAATTCAAATTCCTCCGGAGATATATCTGCGATTGGCAG
TAAATACTGGTTACCTATGTTTATTTCGATTTTTCGGCTTTTAAAACTTG
GAAAAAACTTTCGCGATTTTTAGGAAAATTTCATTTTTCGCGAAATTAAC
TTTCGTGAATTTCTTGTTTAATTCTTTACCTGGCAGAAACTTTCGCGAAA
AAATGCCAAAAACGCGAAAAACGCGAAAGTTTCTGCCCGCGAAAGTTTCT
GCCCTTAAAGAGAGTAAGGCCAAAAAGCCTAGTCTACACAATAGACAGTT
GGAGTTTTACGCTCGAAACGAAGGAAGATATGACGTAGCCTACAAAAAGC
CTGGAGCTGTCTATTGTGTAGACTATACATTTTGAGATTTATTCACTTTG
CGAAAACAGAACGCTCGTCCCGCAACCCCTTTTATATTGATACTCGTTTT
GTGCTTTATATGACACAAAATCGTCAAATATGTCCTGAAAATTGGATAAT
TTTGTCTTTAAGTTTTAAACTTTTTGCATACAATTCTGAGTTGAATGTTG
TGGAGGACAATAGCACAAGCTTATCTATACAGGCAATTATGAATATTTAG
TAATTTATTCATGGCGTGGGGGCGTATTCATTCTTGAAACTATGAATGTT
TTGCGGGATCACCTTTATTCATCGTTACCTCGATTTTATGGCAATTAGGT
TTTTTGAATTGAACGCATGTTTTCGATTTGTATTTGGTTGCTAAGGATTT
CTGTTGGTTGCTATGGATAGTGCTTTCGTTTTGTTTGTAAATCTTTTTTA
CGTCAGAGTGTTTTGAATGCGTCTTATTGGTCCTTACATTCCATGTGTTA
ACATGTAGAAAACGTATTTTGGTACGTTGATGCGTCACTTAAAAATTCGA
AAACCAAAAAAATCATTTTCAATCAGAGTATTCAAGAGATAGACAGCGCG
TTATGGATGCTCAATTGAATTAAGGTACATATACAATCAATTCAGTGAGT
TTACAATTTGTTTTACGGTTTACCTTTATTGCTCGCCTCTTTTTGGAAAT
TCATTTTGAAAGGCTCGTAATGCACACAGATAAAATAAGGAGGTTTCAAT
CACCTTTTTTGATTATTTGGAATAAGCTTTTAATTTCTAGAGGTCAGGAC
GAAAATGTATTTTAAATCTTAATTGTTATTGGAATTTCTTCATGTGCGTT
GGTGTCGAGACCGATTATCTTAACCTGTTCTGTAGATATTTCTCTACCGA
TAACATATATTATCACCATTTTCGCTTGTTTCTTTTCTGTCGCTTATAAT
GAATCAAAATTTGTGCAGAATCTTTTTATCAGATCAAAAGAGAGGGGATG
CAATTCTTACGAAATTGAATGTTAAAAGATGACGATGTAGTGATTTGTTG
CTCTTAAGCAACTTGACACCTTTCTGGGTATATTTAGTTATGTGGTAACT
AGAGAAGTAAGAGAATATAAAAAAGAGAAAGTGTTAACACAACTTTTTTG
TCCCGACCAAATAAAATAACGGAAGGTTAGGTGAAATTGAAAGAATTTAT
ATGTGGAATATCTTACGATCTTTTGTTGCTTTTACGTAGCTGCGAAGAGT
TGCTGGTGCAGCTGGCCTTCATANATCTTACGATCTTTTGTTGCTTTTAC
GTAGCTGCGAAGAGTTGTTGGTGCAGCTGGCCTTCATCTGATATCGGCCG
ATGTTTATACTTCTTCGTTTCCCTATTTTCCATTTTCTATGTTTATTTAC
GTGTTGCAAAACATGGTTGAATTGTTTTCGTACGAATTTGCTTTGTTTAT
TAAGACACCTTTTTCATTGCTTGAACAGAACTTATTCTACGGCACATGAT
ATATACTTTTTTGTAAACTTTTGAGAAAGATTTTGGTCGAGACGAAGAGC
ATAAAAAGTAATGTAAAGCAGAATCTCTCATTTTCTCTCACTTATCAAAG
TGTTGTTGTTGTGTAAAACGTTTAAGTCGTGTGTTATGGTTAGTAGTTGA
TGGATCTTGGTAGAAGTGAGCGGTTCTGTGTGGGCACCTCAAAGATTGTT
ATAATTGTTAGGGTTGAAATTGTTTCTCATCCAATTGGTAGTTTGAAGTT
GTTTCAAACGAATGCTACTGTAGAGTTTATAAAACTTTTCCTCATGCTTA
AACGCTCCTGAAGCTTAGAACTAAGAAAGTATACACTTATTTTTGGTGCT
TTTAGTCTAAAAGGTTTAATACCCTTCTTTATTAGTTTGTCCCATAATTC
AAAGTTCAGCCATTCCAGGCTCAGCATTGTTCTTAAATTGTTCTTATTTT
TTACCAATTTTGAGGTTCATTGTTCTTGTTCGATGTTGTTAAAATTATTC
TTGTAAAAAAGAGAGGGTGTATATACTTTGTCTGGTTTTGAGGCCCGGGT
ACGATTTCCACTGACACCAATATTACTGTGTGTTCATTCGTTTTGGTAAA
TATAATAATTCATTTTGTTCGTTCCCTTTTTCAGACAAACGTAAATGTAT
TTCCACCAAGGAAGAAATCATCCATCGCTTCAGTGAGCCATCAGTCGTCT
TCATCCATGGAATTTGATGGATTATGTCCATGGAGATGCGGTCAATCAGT
CACCTTTGAAACACTCAACCACCACGTGTACCAATGCAACAAAGCTAATG
CGCATGACCAATGCCCCTTCCAGGTGTTAGGATGCACTTATGATGTGAGT
TCTTACAAGGATTTTAGAAATATGGCCACTTGCTATATATTCCGAAATGA
TTGTTTGAAGAATTTTCCTCACTTGCATGGAGTTTGGAAAAAAGCTCTTA
GGAGGAGATTTTTTCAAAGTTGATCCCATGGCTACTACAAGTTACTTTCC
AGCAAAGTTTCTGTTTAAAAGTAAAGTGTTAATGAGCGGAAAATGGATTC
TGGGATGAAGCTTTACTTGATTTTCCTGTTTTTCCAATGTTTTGTCAATA
CTTTTTACGTCAAATATTTAGAAAAGCGCGGCTTAAATTTCAAGTCCCCT
CTTAGAAACGAATAACTTGTGGTTGATTTATAAACAAACTTTGTAATATC
TCTCATCTCTATGGAAGTTCGACTTTCCCCTTTACAATGCAATCTCTCAA
ATGTTTTTTTTGGTAACTGTCTGAGGTCACTGCCCGGCTCTTTCCTTCAC
TATTACAGCTTTCATTTCGTACAAGATACAGAAAGCTTCTTTCTACGAAA
ATTTTCCGCTATGAAATGACTGAAGAAAAAACACACTTAAAAAGAATGGA
AACGATTGCGTGACAAAGTGCAAAAGGGTTTGTTTTTAATGAAGTGTTAT
AACTTCCATTGTTGCTTCTGTTTATTTATAGGGATCAATAGACGTCAAGG
AGCACATGCTAATAGAGAACGCGTCACACGCTAGTCTGTTGGTACCTCAC
GTCCTCAAAAATATGGTCTCACAAGATAAGACCGATTCTGCTATGCAACA
CCAAGCCGAAGATACTGCAGACTTGAGAAGACGTCTGGAAAATGAATCAA
CTAAGAACTCTATTTTATCGAACGAAGTATGTCAGTTGAAGAGAGAACTA
GCAGAGTCGAATAAAAAACTTAATTCTTTAGAGAAAGACATGGCAGTGGT
TCGATCCACTTTTGATGTGCTGCTTCGTGAATTAAACAGTGTGAAAAATC
AAGCGGTGTCAGAGGAGCGCATCAAAAGTGTGGAAGAAACAACGGACAAA
CTAAAATTGGAGAACGCAAATGTGACAAAAAGCGTCGTGGAGAACCACAG
TCTGATCATGCGTCTCGATGAACGAATCAATAACGTCAACTCAAACCTGG
GTGACGTCGATTTGAGACAACAAATACTAGAGAACACTTCTGTCGGTGGT
CGATTCATTTGGAAAATCGATCGACTGAGATCTCGCATCAAACACTCAGC
AGTGGGTAAGGTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008630XLOC_008630Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00015465-exon-sc0000211-1575043694:112295..112370TCONS_00015465-exon-sc0000211-1575043694:112295..112370Clytia hemisphaericaexon
TCONS_00015465-exon-sc0000211-1575043694:111750..111899TCONS_00015465-exon-sc0000211-1575043694:111750..111899Clytia hemisphaericaexon
TCONS_00015465-exon-sc0000211-1575043694:107327..107536TCONS_00015465-exon-sc0000211-1575043694:107327..107536Clytia hemisphaericaexon
TCONS_00015465-exon-sc0000211-1575043694:106108..106689TCONS_00015465-exon-sc0000211-1575043694:106108..106689Clytia hemisphaericaexon
TCONS_00015465-exon-sc0000211-1510915933:112295..112370TCONS_00015465-exon-sc0000211-1510915933:112295..112370Clytia hemisphaericaexon
TCONS_00015465-exon-sc0000211-1510915933:111750..111899TCONS_00015465-exon-sc0000211-1510915933:111750..111899Clytia hemisphaericaexon
TCONS_00015465-exon-sc0000211-1510915933:107327..107536TCONS_00015465-exon-sc0000211-1510915933:107327..107536Clytia hemisphaericaexon
TCONS_00015465-exon-sc0000211-1510915933:106108..106689TCONS_00015465-exon-sc0000211-1510915933:106108..106689Clytia hemisphaericaexon
TCONS_00015465-exon-sc0000211-1491911889:112295..112370TCONS_00015465-exon-sc0000211-1491911889:112295..112370Clytia hemisphaericaexon
TCONS_00015465-exon-sc0000211-1491911889:111750..111899TCONS_00015465-exon-sc0000211-1491911889:111750..111899Clytia hemisphaericaexon
TCONS_00015465-exon-sc0000211-1491911889:107327..107536TCONS_00015465-exon-sc0000211-1491911889:107327..107536Clytia hemisphaericaexon
TCONS_00015465-exon-sc0000211-1491911889:106108..106689TCONS_00015465-exon-sc0000211-1491911889:106108..106689Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000211supercontigsc0000211:106108..112370 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
9.78727	6.37744	3.98988	2.63055	31.5452	25.0896	27.5518	31.1032	25.3671	29.3773	19.153	18.792	26.9304	20.0134	23.6112	14.9064	22.9846	36.1721	13.3866	19.3377	14.3872	14.0853	36.3564	29.8325	22.4496	23.1883	14.4249	8.65515	22.9812	30.3878
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00015465 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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