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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00015435 ID=TCONS_00015435|Name=TCONS_00015435|organism=Clytia hemisphaerica|type=transcript|length=1421bp
TACTTTTGCAGAAGTTCTATTCTAGGCAGCCAGGCAATCTTGAAGAGATG
ATGTACCCTAAGTAACAATGAGTGACACTAAATCAAAAAAGTACATTCAA
GTTGAAGATGTATTTCCAGAGGAAACAGCTCTCCTAGTGCGGGAGATTGG
ACAAAATGCAGTTTGGTCCTTGTCATCTTGCAAAGTTGGATCAGGCGTCA
ACCAGCTTCGTGATAATGACTTGACGACATACTGGCAATCAGATGGGCCG
CAGCCACACCTCATCAATATACAATTTCCAAAGAGAACAATTATCAGTTA
CATAAGTATTTATACTGAGTATAAACAGGATGAAAGTTACACACCAAACA
AAATCTCCATCCGGGTTGGCAACGATCCCCATGATCTTCAACAGTTCGAG
TTATTGGAACTGGATGAGCCAAGTGGCTGGATCAATACAGAACTGTGTAA
AGacaatcaaaatatcaaaactttcATGATACAAATTGCTGTGTTAGGTA
ACCACCAAAATGGGCGTGATACACACTTACggcaaatcaaaatatttggt
CCAAAACACAATACTGTTGACGTGAAGGTCCCTTCCATAGAACAATTTGT
TTCTGTTGACATGGCACAGTTCTCATGTATTAGGTGACGTATATGTTTAC
CGAAATCAATTATTGTACTGAGTGTTGTTTTTATCATTAGATTAACATCN
CAAAATGCAGTTTGGTCCTTGTCATCTTGCAAAGTTGGATCAGGCGTCAA
CCAGCTTCGTGATAATGACTTGACGACATACTGGCAATCAGATGGGCCGC
AGCCACACCTCATCAATATACAATTCCCGAAGAGAACAATTATCAGTTAC
ATAAGTATTTATACTGAGTATAAACAGGATGAAAGTTACACACCAAACAA
AATCTCCATCCGGGTTGGCAACGATCCCCATGATCTTCAACAGTTTGAGT
TATTGGAACTGGATGAGCCAAGTGGCTGGATCAATACAGAACTGTGTAAA
GacaatcaaaatatcaaaactttcATGATACAAATTGCTGTGTTAGGTAA
TCACCAAAATGGACGCGATACACACTTACggcaaatcaaaatatttggtC
CAAAACACAATACTGTTGACGTGAAGGTTCCTTCCATAGAACAATTTGTT
TCTGTTGACATGGCACAGTTCTCATGTATTAGGTGACGTAAATGTTTACC
GAAATCAATTATTGTACTGAATGTTGTTTTTATCATTAGATTAACATCGt
cttctttttttgtaaaatattgtaaaGTAACAACCTCCGTATTATTCTTT
CTCGACCTTTTCACTTCAATCAGttctcttgggtacctaatttATTGAGT
GTGCTTACTCTTAGATAGGTGCCTAATTTATTGGGTGCATTTACCAAGTT
AAAATTCCAATCATAATTGAG Run BLAST on NCBI transcript from alignment at sc0000211:297300..305936+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00015435 ID=TCONS_00015435|Name=TCONS_00015435|organism=Clytia hemisphaerica|type=transcript|length=8637bp|location=Sequence derived from alignment at sc0000211:297300..305936+ (Clytia hemisphaerica)
TACTTTTGCAGAAGTTCTATTCTAGGCAGCCAGGCAATCTTGAAGGTATA
ATCATTATAAtatgatattttgatatttcagtGCTCGAAATAACGTTGAC
ACATTTTAATGCGTAGTTATTATCAATCTGGATAAAGTGTGCATTTagtt
agtttttcattttttacagtacccagacgatctcaatcgaacggaatcga
cgatcgaaccagtcgaaccaaatcgaacgcaatcgaccgattgaaattcg
attgtcgaacgcaatcgaatctcagacgaatattaccgcaattttcagat
tcgattgatattcgattgcgttcgattgatgttcgattgagttcaattgc
gttcgatcgtcgattcattgacccccggactgttcatcgcataatttcta
cgggaaatcgaaagtaatttcatttggcttgtgatgtttgagagcttgga
tgttgggaagctgcaagaataaagctagacgatctcaatcgaacggaatc
gacgatcgacgaaccagtcgaacaacaatcgaaccaatcgaatattatcC
AAAaatttgacgttcgattgagattcgattgcgttcgacaatcgaatttc
aatcggtcgattgcgttcgatttggttcgattggttcgatcgtcgattcc
gttcgattgagatcgtctggcagTACATAGTTTTATATTGACATTTTGTC
TGTTTGATTGAGAACCCTGTTCCACACTTTGTACACTTTGTGTCAAAATT
TAGATTGTAAAGAATTCTTTAGATATATTTTTTAGGAtcttttattgaca
aaattgtACTTATTCGtccttttgaacaaaaatattatctttgatatgtt
ttttttcaaacaacctTTCCTTTTTGTACAGACCCGGGCCTTTTCTATGC
TGGATGGCActaggccaggcccaattgattgtttggtttgtgtcctagaa
gctttgaaaaatgggtcAGTCGGTCGgaaccttttttttattttcaaaca
aatCGTGCAATCCTctcagttgggtgtttaagataaaaactgcaattatt
gctctttttggcAAAGAAATGCCGCGTCAGCAAAATATATTGTCCttata
agggcaaagatgtcaaaggtgtttgaaaattgtgaaattgcATTGAGGAA
aaggtttttcagatttttaaaagtgattttttcaattttttgttgctCAA
TATAATAGACAGGCAGCTGTTGtgatgacatcaaaaaaagtgaataagtG
AAAATTTGAGAGACAAATGTTGAgtacttattttgaaatctttatagttt
agtttagagagtcagaaaaatttacttGGAGTGTTTAATAAAAATCTTTA
CTGGACGTGTCTGAGAATAATTTattgattgatgacgtcacaagcagtta
catcaatatcaatatgccaaaaacattttgttcaaccaccttcacttcaa
gaaaggccaccatagaatgaacttccttttataggatgaaccatattcat
gtggctttcagccttgcactctatcacagagcctatttgagatattttac
taactagcccagagaaaattttttaacctttattatttgaatgcatgcct
ttgtaatactcaaatataaaaaaattaaaaatttttaacttggtcattag
tcaaaaaagtcattaaaattgattagcctctgcgatggagtgcaaggctg
aaagccacatgaacatggttcatcctataaaaggaagttcattctatggt
ggcctatcttgaagtgaaggttgttgaacaaaatgtttttggcattttga
tgTATATAACTGacaagcaaaagtgaaaaattgatgttgcaaaatttcaa
agttttatataccatttgaagcgttttttgatgtagatttcaaatcacat
caatctcaataagtaaaaatttgaatatgaaaagttattgaggtccgTAG
CTCTTCTATGAcgacgtcatttttgaaaaaatgtctcATTTACAatctca
attttctcgagttaggctGAGAAATCGAATACTGTATACCCGTTTAattg
tcttctatatagtttttaatgattttttgaaatttcgacatggaaaaaaa
gtcagttttttggaaataactttcgaactactttttcaaatttaatgtat
gatagctcaaaattNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNta
tcctctatacaataaaaaaagaatgaacaaaaaatttaaattctgaagct
cacaatatctcgacaaagttgtatacttttttttggtgcacccggtatat
atcattattatatgctgaaatctaattttcacttttggtggggacgtcat
catttgacaaattacTACCGGACATGTCCGTTGAATAAATTTTCTCACCA
ATCGGCATCTGGTCATTTTGTAGTCATATAAAAACCTTTATTACATGATT
GAactataaaaacaaacaaaagaaagcCTGAGAGGATGTTGAGAATTTAA
GGTATGTGTAAAGTTAGGTAATCTGACGAAAATTGTGGTTTTCAAACTGA
AAATCTTAGATTGAGATTAGTAACAAAATTGAGATTGAACCTTATAATAA
TAACttatgaaattttaaatatcttgaaatacaaacaataaaatgttaaa
ttaagattataaataataaataaatataatgaATAAATGTAGTAAAAACC
TTTTACAGCACAATATTGAATAGAGACATTACTAGAAAATagttaatttt
tcctaaaatgTTCAATATATAAGTTTAGTTCTGAAGAGATCCTCTTTTGC
AATCTTTCTCAAATCAGTTGGTCAATTATTCCACCATTTTGTGGCTGTTG
GGACAAACGAGTTTGTATATGCAAGAattctgtcaatttttttgctggag
TTTAGTACCGTCTCTAGAATGATTTGGTAGCATACTGAGAGGAATAGCAA
TTTTCTTGTGTAGAATTTTATGTAGCATGACAAGGCTTGAGATTTTATGC
TACAGTGCAATTGAAATCCATTCAAGGTTTTCAATCATTGTTGAAGGACT
TGAATTCCAAGACCAGTTGTTGTTGATGAAACAGGCTGCTTTACGCTGTA
CCATTTCCAGATCAGAGCATAGACCTGCATGGAGGCATACATAACAATTA
GTAGAACATAAACTTTGAATGCCTTGATTTGTATGTTCTTTCAACATCCC
CTCAGCATTCTTTTACGATGTGTTTACCCCATTCTGAGTCTTTAATGGAT
TGTAACGCCTCGGTATTTTGCTGTTTAACACTTTCGAGTGTCTCTATGTG
GATTGTGTATGAGGTGACAACTggtttgattttgtttgttattgcgagct
gtttacatttttgaggGTGAAATTCCATGTCCCAGTTGTGCTCCCAAATT
TGCAGTTGATTCAAGTCTTCTTGTAAGATCTGCATATCTAAAATTGATTT
CATAATTCTGTCAGGGGGGGTTGGTACTAAGCTGTGGGGGCCAGTGCCGT
GTGGTGGTCTgataaggtaagtaaaaaacaacttagtacATGGTACTAAG
TTGTTGTtctaattgaaaaaaacatttttgcaactttgTATCAAGGGTCT
AAATGGTGGTCTCAATACCCAATATGAGGCATCAAGTTAATATCTGTTAC
TCAAAATCctgcaaaatcacaaaaaatgttctttcacTTTCTTCTCTTTC
TCTTGTTTTAAGTTCTGATACCAGATTCTTCATGTAGGTAATGTCTTTAT
CAGGTGCCAGGTGCCAGGTGGACGATATATGCTACAAACAATTACCAGCT
TCTTAAAGGTTTCTATTTTAATAGCAATACATTCTGTTTGGGAAGGATTA
AAAACAGTATCTGTGATGAGAGATTTCTTTGCAAAAATAGCTACACCTCC
CCAGCCATCTTTGCAATCATTACAATATGAAGCATATCCTGGTAGTTCAA
GTTCAAGATTTTTAATCGAAGGATCTAGGAAGGTTTCTGAAGCAATAACA
ATGTCTGAGTCTTCGTCTAAAAGCGTGTTACTGAAGAGTTCTTTTTTACC
CCATAAGCCTTGGAGATTCACCACCATCAGAGGCAGCATTCTTGCTTTAG
TCTTAGGAGTATCAGTGTCTGATTTTCCACTAGAAGCAGAAGATAGTATA
CTGTCTGTTAACGGATTGTTGGAACGTATGGTTGCACAATTAAAGCCATT
GCCATTCAAAATCACAGTCTTCTGCGTGTAGTGTAAATATGTTATCTGAC
ATGTAGACACATTTCTTATGGAATCACTTGTCACATGTATCACAGGCAAT
AGCATCCTGAGTCACTGCTTTCCCACATTCTCGGCATGGGTATTTAATTT
TTCGCATCACGTTaagaagaaaattgataaatGGATAACAATGGAAGAAA
AATGTATAAAGACTGATACCTGCTCAGCTGCACATGGGAACCCAGGTTCT
GACATTCTCATATAATGCTTTCAATTTAGGATAATCCGGGAATGATCATT
TCTTTTCTCCCGTGAATACCCCTTTTGCAGGTACTGCGTATGACATTTTG
ACTGGCAAAGGTATCAATATCAGTAACACCAACGTTGTGCTTAATGAGGG
TATTATCCCCAACGCCCAATTTTTCGATCTGACAATCGATCTGCAAGCCC
ACCACCTAATTGTTTATAGCAGTGGGCTTGTCAAGAAGGAACCGCTCCTT
CACTCGTTCAACGAAGAAGTGATCCACCTTCTTCTCCTTCTTGCTCTTTA
TGTAAATGCATTGACCCATGAGCCAATGATGCTTTCCCTGGTGTTTGACG
GTTGCTGACAACAAACAGAGGCTGCTTAAAAAGCTGCTTTATAAATGAAA
GGAGAAAATTTCCGTGGCTGATCCATGGCCTATAGAAAAAAGAGGCAGGA
CCAGTTAAAAGTGAAATCTTGGCTGTTAAAAAGCCGGTATTTTACCGCTT
TTTAGACAATTGGTCTTGATTGGCCTTTTCAAGTGCTAAAAATTGCTTGG
TGAGTCACCTTTCAACATATAATATTTACACAAATCAACTCTGATGTGCT
ATTTGAAAGAATATATGTATTTACATTATATATTTGCTTCCCCCTCCCTC
ATATAAGTATAAAGAATATCTTCTCTTCTCCCATTTTGTATAGTTTGTAT
TGTTCAGAGGTGATTTCCCAAATTATTTCTATTCATTcagaaaatattct
tttgtatttagaGAAAATTCAGTTCCTGatcctgtatttttgaaggatag
ggtagttaaatactaaaatgggtgctatctatgtgttaaatgttgaaaaa
atgttactacctgggtagttaaaactggtaaacttagcaaattttagcta
tttttgtaattcttttaattttttggatgacttttctgaaaaaatctgaa
aatttttaaaatttgaaaaagttttctgttggaaagttgtttgctgcaaa
caaaaaattctcgaaattttttgtcaatataaaaaagacttgaattataa
gggcaaaacattaatttttgcacttagtgaaaaatgtgtcacaaaaataa
tcattttttagcttttttcgtaaaatcagtccgaaaagcaaccaaaaaat
aggcagtctccatgacaaattgtcccaaaaactcttactaccagggtagt
aaaacaCCTCTTCCAAGAATCcaggtggtggtatgtaaaaattggtaaaa
atccttttactactcatatatgtctgagattttactaccaaCCTCCCCCC
CTGGTAGAAACTGTCTTAGAAagaaaaaaggttaaatttaatTAGTTagt
aggaaaattttttttttggaattcttACAAGCACCTTTTCATTGTCTCGT
TAGCTTAAACAAAGTGCTCAAAAAAGCGCCGATGACACCTTTCTATGTGC
ACATTTTTATAATATGTCATCTTTTTTATGTCAATCTATATAAGAATGTC
TCAATTCAAATAGGAATTTGTGAATGTCTGATACTTGATATTGAAAATAT
GTACTCATACTTTGATTAAGTACATATCCCTGTCTCTTGTAAGAACCAAA
ATCATTCTTGACAATGGTAGGAAAGCTCTatattcaaaagttatagctat
atttaaaataatattttttgcctCAAAGGAACATTTTGTCAATAGAATAA
TAATTCTACAGAATTGTTTGCAAGATAAATTCTGAAACATGCACCAACGT
GGTCTTAAACTGAATACACTCaattaagtttttttaacttttaatttgat
gttcttataaaatcaaaatttacataAGTCTTTAAGATGAGTATTGAGTG
TTTATGCATTTACAGTAAAAGTAAGTAGTACCGGGTGTGACACTattaag
ttaccctctttgatttaatattgtaggcagtagagaagagatttttcaaa
gattatcTCAGAATCATTCAGGGGAAAGCCTAAcataaaatttggtgtat
tactttttaattttacttcattggttcaaaagttatgttcaaaaacctaa
aatgccaattttaaaaattgtcaaaaaacaaaacaatctctgaaaaatct
ttcTGCCACTGCCTGCAATATCAttatcaaagagggtaacttatttgtgg
cacacccggtatattAAGTATTAAGTATGTTTTGAACTTACCCATTTTTT
AACACGAAAAAGTTTTAGATTTTGTCAGTTTAGACATGCTGGatatttta
aagttaatttcaAGACATTGTGCAGCACTGTGAGGTATTTTATAGCATAG
CAACCAGTAGGCAGTAGGCATTTTTGACCTGCCCTGTATGTGAATATTTT
GAATTGTGTGATTTATTAGAGAGTATGAAACAGGCACAAATATGcaaaaa
acatcgatttttatttatttttattttttaatctctggaaatatttttga
acttctttttctaaaattgttGTCCTACCTTTTGAGCTGCTGAGTTTCAA
GTCTTTTTCTTGGCTATATCAAAAGATATGATCTGACCTTACTGACATGA
AAACAGCTTTTCCAGTACAATCAATGTTACCTGGACCCATTAGGACCCTC
TACTCCAGACCCTCTGAAATCAAAAAGCCCCTTAAAACGCTATTTTTACT
TGTCTTCATTCCGTAAACTAGAGAAGAGATGTTGAGGAACAAAAAAGTTG
TATAGAAAACTACCAACCCTCTAGGCTGCTCTAAGTGGTGCTACCCGTAC
TCAGGATCTGGtatatttgaacattttttgttAGTAGAATATTGGTTTTA
ATCTGACACAGAGATGATGTACCCTAAGTAACAATGAGTGACACTAAATC
AAAAAAGTACATTCAAGTTGAAGATGTATTTCCAGAGGAAACAGCTCTCC
TAGTGCGGGAGATTGGACAAAATGCAGTTTGGTCCTTGTCATCTTGCAAA
GTTGGATCAGGCGTCAACCAGCTTCGTGATAATGACTTGACGACATACTG
GCAATCAGATGGGCCGCAGCCACACCTCATCAATATACAATTTCCAAAGA
GAACAATTATCAGTTACATAAGTATTTATACTGAGTATAAACAGGATGAA
AGTTACACACCAAACAAAATCTCCATCCGGGTTGGCAACGATCCCCATGA
TCTTCAACAGTTCGAGTTATTGGAACTGGATGAGCCAAGTGGCTGGATCA
ATACAGAACTGTGTAAAGacaatcaaaatatcaaaactttcATGATACAA
ATTGCTGTGTTAGGTAACCACCAAAATGGGCGTGATACACACTTACggca
aatcaaaatatttggtCCAAAACACAATACTGTTGACGTGAAGGTCCCTT
CCATAGAACAATTTGTTTCTGTTGACATGGCACAGTTCTCATGTATTAGG
TGACGTATATGTTTACCGAAATCAATTATTGTACTGAGTGTTGTTTTTAT
CATTAGATTAACATCNCAAAATGCAGTTTGGTCCTTGTCATCTTGCAAAG
TTGGATCAGGCGTCAACCAGCTTCGTGATAATGACTTGACGACATACTGG
CAATCAGATGGGCCGCAGCCACACCTCATCAATATACAATTCCCGAAGAG
AACAATTATCAGTTACATAAGTATTTATACTGAGTATAAACAGGATGAAA
GTTACACACCAAACAAAATCTCCATCCGGGTTGGCAACGATCCCCATGAT
CTTCAACAGTTTGAGTTATTGGAACTGGATGAGCCAAGTGGCTGGATCAA
TACAGAACTGTGTAAAGacaatcaaaatatcaaaactttcATGATACAAA
TTGCTGTGTTAGGTAATCACCAAAATGGACGCGATACACACTTACggcaa
atcaaaatatttggtCCAAAACACAATACTGTTGACGTGAAGGTTCCTTC
CATAGAACAATTTGTTTCTGTTGACATGGCACAGTTCTCATGTATTAGGT
GACGTAAATGTTTACCGAAATCAATTATTGTACTGAATGTTGTTTTTATC
ATTAGATTAACATCGtcttctttttttgtaaaatattgtaaaGTAACAAC
CTCCGTATTATTCTTTCTCGACCTTTTCACTTCAATCAGttctcttgggt
acctaatttATTGAGTGTGCTTACTCTTAGATAGGTGCCTAATTTATTGG
GTGCATTTACCAAGTTAAAATTCCAATCATAATTGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00015435-exon-sc0000211-1491911889:297300..297344 | TCONS_00015435-exon-sc0000211-1491911889:297300..297344 | Clytia hemisphaerica | exon |
| TCONS_00015435-exon-sc0000211-1510915933:297300..297344 | TCONS_00015435-exon-sc0000211-1510915933:297300..297344 | Clytia hemisphaerica | exon |
| TCONS_00015435-exon-sc0000211-1575043694:297300..297344 | TCONS_00015435-exon-sc0000211-1575043694:297300..297344 | Clytia hemisphaerica | exon |
| TCONS_00015435-exon-sc0000211-1491911889:304561..305936 | TCONS_00015435-exon-sc0000211-1491911889:304561..305936 | Clytia hemisphaerica | exon |
| TCONS_00015435-exon-sc0000211-1510915933:304561..305936 | TCONS_00015435-exon-sc0000211-1510915933:304561..305936 | Clytia hemisphaerica | exon |
| TCONS_00015435-exon-sc0000211-1575043694:304561..305936 | TCONS_00015435-exon-sc0000211-1575043694:304561..305936 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000211 | supercontig | sc0000211:297300..305936 + |
Blast
BLAST of TCONS_00015435 vs. Swiss-Prot (Human)
Match: APC10 (Anaphase-promoting complex subunit 10 OS=Homo sapiens GN=ANAPC10 PE=1 SV=1) HSP 1 Score: 174.866 bits (442), Expect = 2.622e-51 Identity = 97/167 (58.08%), Postives = 123/167 (73.65%), Query Frame = 2
Query: 137 VREIGQNAVWSLSSCKVGSGVNQLRDNDLTTYWQSDGPQPHLINIQFPKRXXXXXXXXXXEYKQDESYTPNKISIRVGNDPHXXXXXXXXXXXXPSGWINTELCKDNQN-IKTFMIQIAVLGNHQNGRDTHLRQIKIFGPKHNTVDVKVPSIEQFVSVDMAQFSCIR 634
VREIG AVWSLSSCK G GV+QLRD++L TYWQSDG QPHL+NIQF ++T + + IY +YK DESYTP+KIS+RVGN+ H+LQ+ LEL EPSGWI+ L +++ +TFMIQIAVL NHQNGRDTH+RQIKI+ P + K P + ++D + IR
Sbjct: 22 VREIGSQAVWSLSSCKPGFGVDQLRDDNLETYWQSDGSQPHLVNIQFRRKTTVKTLCIYADYKSDESYTPSKISVRVGNNFHNLQEIRQLELVEPSGWIHVPLTDNHKKPTRTFMIQIAVLANHQNGRDTHMRQIKIYTPVEESSIGKFP---RCTTIDFMMYRSIR 185 HSP 2 Score: 166.777 bits (421), Expect = 2.948e-48 Identity = 93/167 (55.69%), Postives = 120/167 (71.86%), Query Frame = 2
Query: 686 IRLTSQNAVWSLSSCKVGSGVNQLRDNDLTTYWQSDGPQPHLINIQFPKRXXXXXXXXXXEYKQDESYTPNKISIRVGNDPHXXXXXXXXXXXXPSGWINTELCKDNQN-IKTFMIQIAVLGNHQNGRDTHLRQIKIFGPKHNTVDVKVPSIEQFVSVDMAQFSCIR 1183
+R AVWSLSSCK G GV+QLRD++L TYWQSDG QPHL+NIQF ++T + + IY +YK DESYTP+KIS+RVGN+ H+LQ+ LEL EPSGWI+ L +++ +TFMIQIAVL NHQNGRDTH+RQIKI+ P + K P + ++D + IR
Sbjct: 22 VREIGSQAVWSLSSCKPGFGVDQLRDDNLETYWQSDGSQPHLVNIQFRRKTTVKTLCIYADYKSDESYTPSKISVRVGNNFHNLQEIRQLELVEPSGWIHVPLTDNHKKPTRTFMIQIAVLANHQNGRDTHMRQIKIYTPVEESSIGKFP---RCTTIDFMMYRSIR 185
The following BLAST results are available for this feature:
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