TCONS_00015374 (transcript) - C. hemisphaerica

Overview
NameTCONS_00015374
Unique NameTCONS_00015374
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length641

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00015374 ID=TCONS_00015374|Name=TCONS_00015374|organism=Clytia hemisphaerica|type=transcript|length=641bp
ACAAATATTCCATGCTTCTCCTCCAATTCAACCTTCATGTGATGGTAAAG
CATGCTGTTCAGTGTTCCTCGTAAATATCCATCTTCAATTAAATACATGA
CTTTCCCTTTGTATTGAGGTTTTTCGTTTATCTGGATTGCTTTATGCTGG
AGCAAAATTGTTTTTCCCGTTCCAAACGGCCCACAAATGATCAATTTGTT
GTAGCGGGGATCGTTGCTATTCAGTGCTGCCATTTGTTGATTGGAATAAA
ATAGGATATTGTCACTCGTTGAAACGTTTTCGATGGCGTTTCGGATGTAC
TCCACCCAGTTTGAGCTGGTTATTGGTGCTACGAGGTCTTTCTTGGAAAC
GTGAATCGAAAACACGATAATCTTCAAAAGTTTTTGGACTTGATCGAGTG
AAGTTGGTTTTTGAGCGATTTGAACGATTGGGTAATTANGAATCGAAAAC
ACGATAATCTTCAAAAGTTTTTGGACTTGATCGAGTGAAGTTGGTTTTTG
AGTGATTTGAGCGATTGGGTAATTATCAAAGATGCTTTCCAGCCATAGTT
TTACGTCGGTTTCCATGGTGACAAAATGTTGGGTAGTGATAGAAATGGAA
CTGTTTCCAACACAAATAGCTGGAAAGAAAGTCCATCCAGA
Run BLAST on NCBI

protein sequence of TCONS_00015374-protein

>TCONS_00015374-protein ID=TCONS_00015374-protein|Name=TCONS_00015374-protein|organism=Clytia hemisphaerica|type=polypeptide|length=213bp
SGWTFFPAICVGNSSISITTQHFVTMETDVKLWLESIFDNYPIAQITQKP
TSLDQVQKLLKIIVFSIXNYPIVQIAQKPTSLDQVQKLLKIIVFSIHVSK
KDLVAPITSSNWVEYIRNAIENVSTSDNILFYSNQQMAALNSNDPRYNKL
IICGPFGTGKTILLQHKAIQINEKPQYKGKVMYLIEDGYLRGTLNSMLYH
HMKVELEEKHGIF
Run BLAST on NCBI

transcript from alignment at sc0000210:90932..91572

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00015374 ID=TCONS_00015374|Name=TCONS_00015374|organism=Clytia hemisphaerica|type=transcript|length=641bp|location=Sequence derived from alignment at sc0000210:90932..91572 (Clytia hemisphaerica)
TCTGGATGGACTTTCTTTCCAGCTATTTGTGTTGGAAACAGTTCCATTTC
TATCACTACCCAACATTTTGTCACCATGGAAACCGACGTAAAACTATGGC
TGGAAAGCATCTTTGATAATTACCCAATCGCTCAAATCACTCAAAAACCA
ACTTCACTCGATCAAGTCCAAAAACTTTTGAAGATTATCGTGTTTTCGAT
TCNTAATTACCCAATCGTTCAAATCGCTCAAAAACCAACTTCACTCGATC
AAGTCCAAAAACTTTTGAAGATTATCGTGTTTTCGATTCACGTTTCCAAG
AAAGACCTCGTAGCACCAATAACCAGCTCAAACTGGGTGGAGTACATCCG
AAACGCCATCGAAAACGTTTCAACGAGTGACAATATCCTATTTTATTCCA
ATCAACAAATGGCAGCACTGAATAGCAACGATCCCCGCTACAACAAATTG
ATCATTTGTGGGCCGTTTGGAACGGGAAAAACAATTTTGCTCCAGCATAA
AGCAATCCAGATAAACGAAAAACCTCAATACAAAGGGAAAGTCATGTATT
TAATTGAAGATGGATATTTACGAGGAACACTGAACAGCATGCTTTACCAT
CACATGAAGGTTGAATTGGAGGAGAAGCATGGAATATTTGT

Coding sequence (CDS) from alignment at sc0000210:90932..91572

>TCONS_00015374 ID=TCONS_00015374|Name=TCONS_00015374|organism=Clytia hemisphaerica|type=CDS|length=639bp|location=Sequence derived from alignment at sc0000210:90932..91572 (Clytia hemisphaerica)
TCTGGATGGACTTTCTTTCCAGCTATTTGTGTTGGAAACAGTTCCATTTC
TATCACTACCCAACATTTTGTCACCATGGAAACCGACGTAAAACTATGGC
TGGAAAGCATCTTTGATAATTACCCAATCGCTCAAATCACTCAAAAACCA
ACTTCACTCGATCAAGTCCAAAAACTTTTGAAGATTATCGTGTTTTCGAT
TCNTAATTACCCAATCGTTCAAATCGCTCAAAAACCAACTTCACTCGATC
AAGTCCAAAAACTTTTGAAGATTATCGTGTTTTCGATTCACGTTTCCAAG
AAAGACCTCGTAGCACCAATAACCAGCTCAAACTGGGTGGAGTACATCCG
AAACGCCATCGAAAACGTTTCAACGAGTGACAATATCCTATTTTATTCCA
ATCAACAAATGGCAGCACTGAATAGCAACGATCCCCGCTACAACAAATTG
ATCATTTGTGGGCCGTTTGGAACGGGAAAAACAATTTTGCTCCAGCATAA
AGCAATCCAGATAAACGAAAAACCTCAATACAAAGGGAAAGTCATGTATT
TAATTGAAGATGGATATTTACGAGGAACACTGAACAGCATGCTTTACCAT
CACATGAAGGTTGAATTGGAGGAGAAGCATGGAATATTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008597XLOC_008597Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00015374-exon-sc0000210-1491911889:90932..91572TCONS_00015374-exon-sc0000210-1491911889:90932..91572Clytia hemisphaericaexon
TCONS_00015374-exon-sc0000210-1510915933:90932..91572TCONS_00015374-exon-sc0000210-1510915933:90932..91572Clytia hemisphaericaexon
TCONS_00015374-exon-sc0000210-1575043694:90932..91572TCONS_00015374-exon-sc0000210-1575043694:90932..91572Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00015374-proteinTCONS_00015374-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000210supercontigsc0000210:90932..91572 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.574871	0.480505	0.557913	0.909718	7.19871	6.30112	11.2975	13.3009	2.9066	8.40067	3.46235	2.54366	22.1097	14.1546	9.96182	14.9132	6.14252	9.54165	17.9315	16.1303	5.84908	5.73052	3.45519	2.91064	9.87541	7.2948	4.24902	4.32645	18.3055	12.4223
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR013317DnaA
IPR027417P-loop_NTPase
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00015374 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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